Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0578200-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:29149194:29150722:1 gene:Os04g0578200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0404F02.9 protein. (Os04t0578200-01)
Sequence

ATGGCCATGCTTGTCCGCTCTCCAACTTCTACCCTCCCCGCAGCGAATCACCGGCAGAAA
TCCGGCGTGCTCCTCCGGCGTCCAACGCGCCGCTCCGCTCGCCGTTTCCAACTGCACGCG
GAGAAGCCCGCTTCCCCTGGCGCGGGCAACGAGACGTCCTCCAGCTCGGAGAACGCCGTC
CTCAGGGCCGCCTGGTACGGCTCCGAGCTCCTCGGCATCGCCGCCTCGTTCTTCCGGCCG
TCGCAGCCGCCTACGGAGGGGGACAGCGCCGGAGCCGTAGAAGAAGCAGCGTCGGAGCCT
CAGGGCCGCGCTCAGGTCGCCGAGGCTGTCAAGGATGACTTCGCGCGGTCATATTTCGTC
ACAGGGAATCTCACGCTGAAGGCTTATGAAGAGGACTGCGAGTTCGCCGACCCTGCAGGT
TCGTTCAATGGCCTGCAGCGCTTCAAGAGAAACTGCACAAACTTCGGTTCTCTCTTGGAA
AAATCTAACATGAAGCTCACCAAATGGGAGGATCTGGAGGACAAATCAATTGGACACTGG
CGTTTCAGCTGCGTCATGTCGTTCCCCTGGAGGCCTATTCTGTCCGCGACCGGGTACACT
GAATATTACTTCGACGCTGGATCAGGAAAGGCATGTCGAGCACTGGAACGTCCCCAAGAT
GGCACTCCTGCGGCAGATTTTCAGGCCGAGTCGATGGGTATGGGAGAAACGCACCGACGA
ATGAAGCATCGGTGTTCATCGTGA

Peptide Sequence

PEP ID

Os04t0578200-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:29149194:29150722:1 gene:Os04g0578200 transcript:Os04t0578200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0404F02.9 protein. (Os04t0578200-01)
Sequence

MAMLVRSPTSTLPAANHRQKSGVLLRRPTRRSARRFQLHAEKPASPGAGNETSSSSENAV
LRAAWYGSELLGIAASFFRPSQPPTEGDSAGAVEEAASEPQGRAQVAEAVKDDFARSYFV
TGNLTLKAYEEDCEFADPAGSFNGLQRFKRNCTNFGSLLEKSNMKLTKWEDLEDKSIGHW
RFSCVMSFPWRPILSATGYTEYYFDAGSGKACRALERPQDGTPAADFQAESMGMGETHRR
MKHRCSS

Transcript Sequence

Transcript ID

Os04t0578200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:29149194:29150722:1 gene:Os04g0578200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0404F02.9 protein. (Os04t0578200-01)
Sequence

ATTTCTTCTTGGTCGCTTTGTTGGCGAGGCCGGATCAGCTCCGGTCCTCCGGCGGCCGCA
GGAAAAGGAATGGCCATGCTTGTCCGCTCTCCAACTTCTACCCTCCCCGCAGCGAATCAC
CGGCAGAAATCCGGCGTGCTCCTCCGGCGTCCAACGCGCCGCTCCGCTCGCCGTTTCCAA
CTGCACGCGGAGAAGCCCGCTTCCCCTGGCGCGGGCAACGAGACGTCCTCCAGCTCGGAG
AACGCCGTCCTCAGGGCCGCCTGGTACGGCTCCGAGCTCCTCGGCATCGCCGCCTCGTTC
TTCCGGCCGTCGCAGCCGCCTACGGAGGGGGACAGCGCCGGAGCCGTAGAAGAAGCAGCG
TCGGAGCCTCAGGGCCGCGCTCAGGTCGCCGAGGCTGTCAAGGATGACTTCGCGCGGTCA
TATTTCGTCACAGGGAATCTCACGCTGAAGGCTTATGAAGAGGACTGCGAGTTCGCCGAC
CCTGCAGGTTCGTTCAATGGCCTGCAGCGCTTCAAGAGAAACTGCACAAACTTCGGTTCT
CTCTTGGAAAAATCTAACATGAAGCTCACCAAATGGGAGGATCTGGAGGACAAATCAATT
GGACACTGGCGTTTCAGCTGCGTCATGTCGTTCCCCTGGAGGCCTATTCTGTCCGCGACC
GGGTACACTGAATATTACTTCGACGCTGGATCAGGAAAGGCATGTCGAGCACTGGAACGT
CCCCAAGATGGCACTCCTGCGGCAGATTTTCAGGCCGAGTCGATGGGTATGGGAGAAACG
CACCGACGAATGAAGCATCGGTGTTCATCGTGAACTAGGATTATGCATGATTATACTCAA
TGGTACCTGGTTAGGGGCATTAGTAGTACTAGTACCTTGCATGGACCGCATGGTAGCCTA
TCAGGTTAAGGCTGCTCGCTCCTGTTGTACAGACTACAGACTACAAGCAGTAATAGATCG
AACCATAATCATTTTAGTTCTGGGAGATTAAACCGT