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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0569300-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:28643382:28645057:1 gene:Os04g0569300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 11, RHOMBOID 11 description:Similar to Membrane protein. (Os04t0569300-01);Similar to Membrane protein. (Os04t0569300-02)
Sequence

ATGTCGAACGCCGACGTGGAGGCCGGTGGGCCGGCGGGGAGGGAGGCGACGACGGGGATC
AAGCCGCCGCCGGGGAGGTACAACCCGAGCGGCAACGGGCCGAACGCGGTGGCGCCGGCG
CCGCCGCCGTTCTACTACTACGACCAAGCGGCGGCGCAGGAGCGGCACCACCGGACGTGG
GTGGTGCCGCTGGTGGTGATAGCCAACGTGGCCATGTTCGTGGTGGTGATGTACTACAAC
AACTGCCCGGCCAACGGCGGCCGCCGCGACTGCGTCGGCCGCAGCTTCCTCCGACGGCTC
TCCTTCCAGCCGCTCAGGGAGAACCCCGTCCTCGGCCCCTCGGCCGCCACGCTGCGGAAG
TACGGGGCGCTGGACTGGTACGGGGTGGTGCACGGCAACCAGGCGTGGCGGCTGGAGACG
AGCACCTGGCTGCACGCCGGCCTCATCCACCTCGCCGCCAACATGATCAGCCTCCTCATC
ATCGGCATCCGCCTCGAGCAGCAGTTTGGATTCTGGAAGGTCGGGCTGGTCTACCTCGTA
TCCGGCTTCGGCGGGAGCGTCCTCTCCGTGCTCTTCATCAGCAGAAATGGCATCACCGTC
GGCGCATCCGGCGCCCTCTTCGGCCTCCTCGGCGCCATGCTCTCGGAGCTCATCACCAAC
TGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACCTGATCATCATCGCCGCCATC
AACCTGGCGCTGGGTATACTCCCCCGCGTAGACAACTTCGCGCACATTGGGGGGTTCGCC
ACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCCAGTTCGGATGGTCGGAGCAG
GTTTCCAGCGCCAAGTCCAAATACAACGCGTTCCAGATCATTCTCCTGACTCTCTCCGTG
GCCTTGTTGATAGCAGGGTTTGCAGCTGGGTTGGTCAGTGTTTTCAAGGGAGTGGACGGC
AACGCTCATTGCAGCTGGTGCCACTACCTCACCTGCGTGCCGACATCCAGCTGGAAATGC
GACAAATGA

Peptide Sequence

PEP ID

Os04t0569300-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:28643382:28645057:1 gene:Os04g0569300 transcript:Os04t0569300-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 11, RHOMBOID 11 description:Similar to Membrane protein. (Os04t0569300-01);Similar to Membrane protein. (Os04t0569300-02)
Sequence

MSNADVEAGGPAGREATTGIKPPPGRYNPSGNGPNAVAPAPPPFYYYDQAAAQERHHRTW
VVPLVVIANVAMFVVVMYYNNCPANGGRRDCVGRSFLRRLSFQPLRENPVLGPSAATLRK
YGALDWYGVVHGNQAWRLETSTWLHAGLIHLAANMISLLIIGIRLEQQFGFWKVGLVYLV
SGFGGSVLSVLFISRNGITVGASGALFGLLGAMLSELITNWTIYSNRCAAMVNLIIIAAI
NLALGILPRVDNFAHIGGFATGFLLGFVLLIQPQFGWSEQVSSAKSKYNAFQIILLTLSV
ALLIAGFAAGLVSVFKGVDGNAHCSWCHYLTCVPTSSWKCDK

Transcript Sequence

Transcript ID

Os04t0569300-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:28643382:28645057:1 gene:Os04g0569300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 11, RHOMBOID 11 description:Similar to Membrane protein. (Os04t0569300-01);Similar to Membrane protein. (Os04t0569300-02)
Sequence

GTGTCCGTCTCCTTCCTCATCTCCAACTCAGGAGATCATAGAATCCGAAACGAACCGTTG
CAGCAGCTGATCGTCAGGCCATGTCGAACGCCGACGTGGAGGCCGGTGGGCCGGCGGGGA
GGGAGGCGACGACGGGGATCAAGCCGCCGCCGGGGAGGTACAACCCGAGCGGCAACGGGC
CGAACGCGGTGGCGCCGGCGCCGCCGCCGTTCTACTACTACGACCAAGCGGCGGCGCAGG
AGCGGCACCACCGGACGTGGGTGGTGCCGCTGGTGGTGATAGCCAACGTGGCCATGTTCG
TGGTGGTGATGTACTACAACAACTGCCCGGCCAACGGCGGCCGCCGCGACTGCGTCGGCC
GCAGCTTCCTCCGACGGCTCTCCTTCCAGCCGCTCAGGGAGAACCCCGTCCTCGGCCCCT
CGGCCGCCACGCTGCGGAAGTACGGGGCGCTGGACTGGTACGGGGTGGTGCACGGCAACC
AGGCGTGGCGGCTGGAGACGAGCACCTGGCTGCACGCCGGCCTCATCCACCTCGCCGCCA
ACATGATCAGCCTCCTCATCATCGGCATCCGCCTCGAGCAGCAGTTTGGATTCTGGAAGG
TCGGGCTGGTCTACCTCGTATCCGGCTTCGGCGGGAGCGTCCTCTCCGTGCTCTTCATCA
GCAGAAATGGCATCACCGTCGGCGCATCCGGCGCCCTCTTCGGCCTCCTCGGCGCCATGC
TCTCGGAGCTCATCACCAACTGGACCATCTACAGCAACAGATGTGCAGCCATGGTGAACC
TGATCATCATCGCCGCCATCAACCTGGCGCTGGGTATACTCCCCCGCGTAGACAACTTCG
CGCACATTGGGGGGTTCGCCACCGGGTTCCTCCTCGGCTTCGTGCTGCTGATTCAGCCCC
AGTTCGGATGGTCGGAGCAGGTTTCCAGCGCCAAGTCCAAATACAACGCGTTCCAGATCA
TTCTCCTGACTCTCTCCGTGGCCTTGTTGATAGCAGGGTTTGCAGCTGGGTTGGTCAGTG
TTTTCAAGGGAGTGGACGGCAACGCTCATTGCAGCTGGTGCCACTACCTCACCTGCGTGC
CGACATCCAGCTGGAAATGCGACAAATGAACAGGAGATCAGTGACGCATTAGCATGCCAT
GCCTCCCACTTGTCACTGCAGGGGAGAGAATGCCACCCTGCTTAAGAGGGAACAATCGAG
ATACAATAGATATTGTTTCTGTTTGAGACCACACTGTAAAATTTTTACGCTATATAGAAC
TTCAATATTGTCC