Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0569100-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:28600699:28607038:-1 gene:Os04g0569100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RICE OUTMOST CELL-SPECIFIC GENE 4 description:Similar to OCL1 homeobox protein. (Os04t0569100-01)
Sequence

ATGCAGTTCCCGTTCTCCGGCGCTGGCCCGGGCGTCTTCACGTCATCGCCGGCGCTCTCC
CTCGCGCTGGCGGACGCGGTGGCAGGCCGGAACAGCGGCGGCGGTGGGAAGATGGTTACC
GCGGCCCATGGCGGCGTCGGCGGAGGAGGAGGAGGAGGACGCGCGAAGGCGAGGGACGCG
TTGGAGGTGGAGAACGAGATGAGCCGGTCCGGGAGCGACCACCTCGACGTCGTCTCTTGC
GGCGACGCGGGCGGCGGCGGCGGCGACGACGACGATGACGAGGACGCCGAGCACGGCAAC
CCGCCCAAGCGCAAGAAGCGGTACCACCGCCACACGCCGCAGCAGATCCAAGAGCTGGAA
GCGATGTTCAAGGAATGCCCCCACCCAGACGAGAAGCAGCGCGCCGAGCTGAGCAAGCGG
CTCGGCCTCGAACCCCGGCAGGTCAAGTTCTGGTTCCAGAATCGGCGAACGCAGATGAAG
ATGCAACTGGAGCGACACGAGAACTCGCTGCTGAAGCAGGAGAACGATAAGCTGCGGTCC
GAGAACCTGTCAATCCGGGAGGCCACGAGCAACGCGGTGTGCGTTGGCTGCGGCGGCCCG
GCGATGCTCGGGGAGGTGTCCCTGGAGGAGCACCACCTTCGCGTCGAGAACGCGAGGCTC
AAGGACGAGCTCAGCCGAGTGTGCGCGCTCGCCGCCAAGTTCCTTGGCAAGTCCATCTCT
GTCATGGCGCCACCGCAGATGCATCAGCCTCATCCTGTGCCAGGCTCGTCGCTGGAGCTT
GCGGTTGGGGGTATCGGTTCGATGCCATCAGCCACGATGCCCATCTCGACGATCACTGAT
TTTGCTGGCGCCATGTCCAGTTCAATGGGCACGGTGATCACGCCCATGAAGTCTGAGGCT
GAACCATCGGCAATGGCTGGCATTGACAAGTCCTTGTTCTTGGAGCTAGCAATGAGTGCA
ATGGATGAGCTAGTCAAGATGGCTCAGATGGGGGATCCGCTATGGATTCCAGGTGCCTCC
GTACCTTCCTCGCCGGCAAAGGAGAGTCTAAACTTCGAGGAGTACCTAAACACCTTCCCA
CCTTGCATCGGGGTGAAGCCTGAAGGGTATGTATCAGAGGCATCTAGAGAATCTGGCATT
GTCATCATTGACGATGGCGCCGCGCTTGTGGAGACCCTCATGGATGAGCGACGGTGGTCC
GATATGTTCTCATGCATGATTGCCAAGGCATCAACCACTGAGGAGATTTCTACTGGTGTT
GCTGGGAGTAGAAATGGTGCATTGCTTCTTATGCAGGCAGAGCTACAGGTGCTTTCTCCT
CTTGTGCCTATTAGAGAGGTGAAGTTTCTCAGGTTCTCCAAACAGCTGGCTGATGGTGTA
TGGGCTGTAGTGGACGTTTCGGCTGATGAATTGATGAGGGATCAGGGCATTACTTCTGCA
TCCTCGACTGCAAACATGAACTGCCGAAGGCTGCCTTCTGGTTGTGTGCTGCAGGACACT
CCAAATGGGTTTGTTAAGGTCACATGGGTTGAACATACAGAATATGATGAGGCATCTGTG
CACCCGCTCTACCGGCCTCTTCTCCGGTCTGGTCTTGCCCTTGGTGCAGGGCGATGGATC
GCGACATTACAGCGGCAGTGCGAATGCTTGGCCCTTCTCATGTCTTCTATTGCATTGCCA
GAGAACGACTCATCAGCTATCCATCCTGAAGGTAAACGGAGCATGTTGAAGTTGGCAAGG
AGGATGACGGACAACTTCTGTGCAGGGGTGAGCACATCATCTACCCGTGAATGGAGCAAA
CTGGTTGGATTGACAGGCAACATTGGGGAGGATGTGCATGTAATGGCGCGGAAGAGTGTG
GATGAACCTGGAACGCCGCCAGGTGTGGTGCTTAGTGCTGCTACATCTGTGTGGATGCCT
GTGATGCCTGAACGGCTCTTCAACTTCTTGCACAACAAGGGGCTGCGTGCTGAATGGGAT
ATCCTCAGCAATGGTGGCCCTATGCAGGAGGTGACAAGCATTGCCAAGGGGCAACAGAAT
GGCAATACCGTATGTCTACTGAAGGCTAGTCCCACCAAAGACAAGCAGAACAGCATGCTG
ATCCTACAGGAGACGTGTGCAGACGCATCCGGTTCAATGGTTGTGTATGCTCCTGTAGAC
ATCCCAGCAATGCACCTTGTCATGAGTGGTGGGGATTCGTCATGCGTCGCCCTTCTTCCA
TCAGGTTTTGCCATCCTGCCTGCTGGGCCTAGCATCGGCGCAGATCACAAGATGGGCGGT
TCATTGCTCACCGTTGCATTCCAGATACTTGCCAACAGCCAGCCCAGTGCTAAGCTCACG
GTGGAGTCAGTCGAGACCGTGAGCAACCTTATCTCCTGCACCATCAAGAAGATCAAGACG
GCGCTGCATTGCGACGTGTGA

Peptide Sequence

PEP ID

Os04t0569100-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:28600699:28607038:-1 gene:Os04g0569100 transcript:Os04t0569100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RICE OUTMOST CELL-SPECIFIC GENE 4 description:Similar to OCL1 homeobox protein. (Os04t0569100-01)
Sequence

MQFPFSGAGPGVFTSSPALSLALADAVAGRNSGGGGKMVTAAHGGVGGGGGGGRAKARDA
LEVENEMSRSGSDHLDVVSCGDAGGGGGDDDDDEDAEHGNPPKRKKRYHRHTPQQIQELE
AMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMKMQLERHENSLLKQENDKLRS
ENLSIREATSNAVCVGCGGPAMLGEVSLEEHHLRVENARLKDELSRVCALAAKFLGKSIS
VMAPPQMHQPHPVPGSSLELAVGGIGSMPSATMPISTITDFAGAMSSSMGTVITPMKSEA
EPSAMAGIDKSLFLELAMSAMDELVKMAQMGDPLWIPGASVPSSPAKESLNFEEYLNTFP
PCIGVKPEGYVSEASRESGIVIIDDGAALVETLMDERRWSDMFSCMIAKASTTEEISTGV
AGSRNGALLLMQAELQVLSPLVPIREVKFLRFSKQLADGVWAVVDVSADELMRDQGITSA
SSTANMNCRRLPSGCVLQDTPNGFVKVTWVEHTEYDEASVHPLYRPLLRSGLALGAGRWI
ATLQRQCECLALLMSSIALPENDSSAIHPEGKRSMLKLARRMTDNFCAGVSTSSTREWSK
LVGLTGNIGEDVHVMARKSVDEPGTPPGVVLSAATSVWMPVMPERLFNFLHNKGLRAEWD
ILSNGGPMQEVTSIAKGQQNGNTVCLLKASPTKDKQNSMLILQETCADASGSMVVYAPVD
IPAMHLVMSGGDSSCVALLPSGFAILPAGPSIGADHKMGGSLLTVAFQILANSQPSAKLT
VESVETVSNLISCTIKKIKTALHCDV

Transcript Sequence

Transcript ID

Os04t0569100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:28600699:28607038:-1 gene:Os04g0569100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RICE OUTMOST CELL-SPECIFIC GENE 4 description:Similar to OCL1 homeobox protein. (Os04t0569100-01)
Sequence

GCACGCACTGCTGCTGCTGCTCGCTCTCGCTTTGCTTCCCCTAATCTTCTCCCGGGCCAG
GGGGGAAGAGGGGCGGAATTCGGGCACGAGCTTTGGAGTTGGAGATCACTTCGGCGACGG
CGTGGTCCCCGCCGGCATGCAGTTCCCGTTCTCCGGCGCTGGCCCGGGCGTCTTCACGTC
ATCGCCGGCGCTCTCCCTCGCGCTGGCGGACGCGGTGGCAGGCCGGAACAGCGGCGGCGG
TGGGAAGATGGTTACCGCGGCCCATGGCGGCGTCGGCGGAGGAGGAGGAGGAGGACGCGC
GAAGGCGAGGGACGCGTTGGAGGTGGAGAACGAGATGAGCCGGTCCGGGAGCGACCACCT
CGACGTCGTCTCTTGCGGCGACGCGGGCGGCGGCGGCGGCGACGACGACGATGACGAGGA
CGCCGAGCACGGCAACCCGCCCAAGCGCAAGAAGCGGTACCACCGCCACACGCCGCAGCA
GATCCAAGAGCTGGAAGCGATGTTCAAGGAATGCCCCCACCCAGACGAGAAGCAGCGCGC
CGAGCTGAGCAAGCGGCTCGGCCTCGAACCCCGGCAGGTCAAGTTCTGGTTCCAGAATCG
GCGAACGCAGATGAAGATGCAACTGGAGCGACACGAGAACTCGCTGCTGAAGCAGGAGAA
CGATAAGCTGCGGTCCGAGAACCTGTCAATCCGGGAGGCCACGAGCAACGCGGTGTGCGT
TGGCTGCGGCGGCCCGGCGATGCTCGGGGAGGTGTCCCTGGAGGAGCACCACCTTCGCGT
CGAGAACGCGAGGCTCAAGGACGAGCTCAGCCGAGTGTGCGCGCTCGCCGCCAAGTTCCT
TGGCAAGTCCATCTCTGTCATGGCGCCACCGCAGATGCATCAGCCTCATCCTGTGCCAGG
CTCGTCGCTGGAGCTTGCGGTTGGGGGTATCGGTTCGATGCCATCAGCCACGATGCCCAT
CTCGACGATCACTGATTTTGCTGGCGCCATGTCCAGTTCAATGGGCACGGTGATCACGCC
CATGAAGTCTGAGGCTGAACCATCGGCAATGGCTGGCATTGACAAGTCCTTGTTCTTGGA
GCTAGCAATGAGTGCAATGGATGAGCTAGTCAAGATGGCTCAGATGGGGGATCCGCTATG
GATTCCAGGTGCCTCCGTACCTTCCTCGCCGGCAAAGGAGAGTCTAAACTTCGAGGAGTA
CCTAAACACCTTCCCACCTTGCATCGGGGTGAAGCCTGAAGGGTATGTATCAGAGGCATC
TAGAGAATCTGGCATTGTCATCATTGACGATGGCGCCGCGCTTGTGGAGACCCTCATGGA
TGAGCGACGGTGGTCCGATATGTTCTCATGCATGATTGCCAAGGCATCAACCACTGAGGA
GATTTCTACTGGTGTTGCTGGGAGTAGAAATGGTGCATTGCTTCTTATGCAGGCAGAGCT
ACAGGTGCTTTCTCCTCTTGTGCCTATTAGAGAGGTGAAGTTTCTCAGGTTCTCCAAACA
GCTGGCTGATGGTGTATGGGCTGTAGTGGACGTTTCGGCTGATGAATTGATGAGGGATCA
GGGCATTACTTCTGCATCCTCGACTGCAAACATGAACTGCCGAAGGCTGCCTTCTGGTTG
TGTGCTGCAGGACACTCCAAATGGGTTTGTTAAGGTCACATGGGTTGAACATACAGAATA
TGATGAGGCATCTGTGCACCCGCTCTACCGGCCTCTTCTCCGGTCTGGTCTTGCCCTTGG
TGCAGGGCGATGGATCGCGACATTACAGCGGCAGTGCGAATGCTTGGCCCTTCTCATGTC
TTCTATTGCATTGCCAGAGAACGACTCATCAGCTATCCATCCTGAAGGTAAACGGAGCAT
GTTGAAGTTGGCAAGGAGGATGACGGACAACTTCTGTGCAGGGGTGAGCACATCATCTAC
CCGTGAATGGAGCAAACTGGTTGGATTGACAGGCAACATTGGGGAGGATGTGCATGTAAT
GGCGCGGAAGAGTGTGGATGAACCTGGAACGCCGCCAGGTGTGGTGCTTAGTGCTGCTAC
ATCTGTGTGGATGCCTGTGATGCCTGAACGGCTCTTCAACTTCTTGCACAACAAGGGGCT
GCGTGCTGAATGGGATATCCTCAGCAATGGTGGCCCTATGCAGGAGGTGACAAGCATTGC
CAAGGGGCAACAGAATGGCAATACCGTATGTCTACTGAAGGCTAGTCCCACCAAAGACAA
GCAGAACAGCATGCTGATCCTACAGGAGACGTGTGCAGACGCATCCGGTTCAATGGTTGT
GTATGCTCCTGTAGACATCCCAGCAATGCACCTTGTCATGAGTGGTGGGGATTCGTCATG
CGTCGCCCTTCTTCCATCAGGTTTTGCCATCCTGCCTGCTGGGCCTAGCATCGGCGCAGA
TCACAAGATGGGCGGTTCATTGCTCACCGTTGCATTCCAGATACTTGCCAACAGCCAGCC
CAGTGCTAAGCTCACGGTGGAGTCAGTCGAGACCGTGAGCAACCTTATCTCCTGCACCAT
CAAGAAGATCAAGACGGCGCTGCATTGCGACGTGTGAACCCAACAAGGGGGGACTTTTGG
CCTAGTGGGAGCGGCTGTGGCGATGAGCCTGAGTCAAGAACGAACCGCGACATAGGAAGG
GACCTTTGCTAGGTGGCAAGGACCGGACGGGGCAGGTCCTTAGCACAGAGCAATGGTGGT
GGTTCGGGTATTGACTCAGCCTCTCCCGCCTCCGTTCTCTCCTGTGACTGGTGCATGTTG
AAGTGAACCTGCATTTTGGACGCCATGTAGCAGGCCATCTTTCTTTCTTTTTCCTTTTTC
TTTTTCTTTTTCTTTTTTTAGGGAGAAGGGAGTCATCTGTGTTTTTTGTTGGCTGGCTCA
GGGTGTTGGTGTTTCTGGTTTCTAGCTTTTGTTACAGGGAGATGTGATACATTTTGTAGA
AGCTCCGAATTGTCGTGCTGGTATGTGAGGTTCTGATCATAGGTCTGTGTTTGATAGTCT
CGAGCTATCAACGCCTGGCAAATGCAAACCTTGTTATGCTAAAATATGTTTTAGATCAAT
CTGATTCTGAAAGCTGTTTACATGTCCC