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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0564600-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:28293225:28294342:1 gene:Os04g0564600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HMG1 protein. (Os04t0564600-01);Similar to H0409D10.9 protein. (Os04t0564600-02)
Sequence

ATGGGCAAGGCCGACGCCGACGCCGAGTTCAAGGCCGCCGGCAAGCGCAAGAAGGCCGGA
GGCGCCGGCAAGCCCAAGCGCGGCCTCACCCCGTTCTTCGCCTTCCTGGCTGAGTTCAGG
CCGCAGTACATGGAGAAGCACCCAAACACCAAGGGCGTCGCAGCGGTGACCAAGGCTGCC
GGGGAGAAGTGGCGCGCTATGTCGGACGAGGTTAGCAGATGCTGGCAGTTGTTGTACTAG

Peptide Sequence

PEP ID

Os04t0564600-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:28293225:28294342:1 gene:Os04g0564600 transcript:Os04t0564600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HMG1 protein. (Os04t0564600-01);Similar to H0409D10.9 protein. (Os04t0564600-02)
Sequence

MGKADADAEFKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAA
GEKWRAMSDEVSRCWQLLY

Transcript Sequence

Transcript ID

Os04t0564600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:28293225:28294342:1 gene:Os04g0564600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HMG1 protein. (Os04t0564600-01);Similar to H0409D10.9 protein. (Os04t0564600-02)
Sequence

AATTCCCCTCTCCTCTTCGCTCTCATCTCCGCTTCCAGCCAGCCACTGCAACCCTAACCC
TCCGCAAAGCCCTACCCCCCTTCCGCCACCATGGGCAAGGCCGACGCCGACGCCGAGTTC
AAGGCCGCCGGCAAGCGCAAGAAGGCCGGAGGCGCCGGCAAGCCCAAGCGCGGCCTCACC
CCGTTCTTCGCCTTCCTGGCTGAGTTCAGGCCGCAGTACATGGAGAAGCACCCAAACACC
AAGGGCGTCGCAGCGGTGACCAAGGCTGCCGGGGAGAAGTGGCGCGCTATGTCGGACGAG
GTTAGCAGATGCTGGCAGTTGTTGTACTAGCACGCTTTATTATGCTTCTGTGCGGGGATT
CCCGCAACTGATATTTGCACGTCCAATAAGCTGATTACACTTGTCGCATATCATGTGAAA
AAGCATATTATATGCAGTTTTCTGAGCTTTTAGCAGTTATTATTAGTTATGACCTGACGC
TTTATAACCACAAATTATGCCATTCTTCTTCAGTACACGTGCTGTACAGTGGCTTTATTG
TCTGTTGCAACATGTATCGATCCTTAGCATGCCTGTGCAGCAAAGCTATCTAGAGTGCTA
GCTAGACTCATCCATGGTCCATGGATCACATCAAGCTCTTACAGGTAATGGGTGGAGATT
CTATACAGCTGTGAGGTTCTTTGAGCCATGTTTTTGGGAGAATGCACTATAGGAAATAAA
ATCACTTGAC