Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0561900-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:28127062:28130289:-1 gene:Os04g0561900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rice microspore-preferred 2 description:Cupredoxin domain containing protein. (Os04t0561900-01)
Sequence	ATGTCGTCACGGCGAAGCATGGGAGCCCTGGCCGCTGTCTGCGTCTGCATGTTCGTCTTC GTCTCCTCCGCACGGGCAGAAGATCCGTATAGATTTTTCGATTGGGAGGTTACTACTGGG AACATCAATCCTCTCGGCGTCCAGCAGCAGGGTATTCTGATCAATGGGCAATTTCCGGGG CCGGAGATTGACTGCCAGACGAATGATAACTTGATCGTCAACGTGCACAACCGTTTGTCG GAGCCGTTTCTTCTGTCATGGAACGGGCTTCAGCACAGGAAGAACTCGTGGCAGGACGGC GTGTCCGGCACGAACTGCCCGATCCCGCCGGGCCAGAACTTCACCTACCAAATGCAGGCC AAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCGCTCGCCTTCCACAAGGCCGCCGGC GGCTTTGGCGCCATCCGCATCCGCAGCCGCCCGCTGATCCCCGTCCCCTTCGATCCGCCG GCCGGCGAGTACACCATGCTGATCGGCGACTGGTACAAGACCAGCCACAAGGCTCTGCAA GCCATGCTGGACAGTGGAAAGCAGCTGCCTTCCCCTGATGGCATCCTGATTAACGGCAAA GGTCCAAATGGCGCAAGCTTCACCGTTGAGCAAGGGAAGACGTACAGATTGCGCGTCTCC AACGTCGGCCTGCAGAGCACGCTCAATTTGAGGATCCAAGACCACAACATGACGCTGGTC GAGGTGGAGGGCACGCACACGGTGCAGAACACCTACAGCTCCCTCTACGTCCACGCCGGC CAGTCGCTGTCCGTGCTGTTCACGGCCAACCGCCCGCCCGGCGTCTACCAAATCACCGTC TCCACCCGCTTCGCCAAGCGTGCACTCAACTCGTCCGCCGTCCTGCGCTACGCCGGCTCG AGCGCCACCATCTCCTCACCGCCGCCACCGGCTGGCCTCGCCGACGACATCGACTTCTCG CTCGACCAGGCTCGCTCCATCAGGACGAACCTGACGGCGAGCGGGCCACGGCCGAACCCG CAGGGCTCGTACCACTACGGCTCGATCAACGTGACACGCACAATCCGGCTCGCCAACTCG GCGGGGCGCGTCGCCGGCAAGCAGCGGTACGCCGTGAACGGCGTGTCGTTCGTGGAGGCC GACACGCCGCTCAAGCTGGCCGACTACTACAGGATCAGCGACGTGTTCCGGCTCGGCGGC ATCCCGGACGCGCCGCCCGCGGGCGCCGCGGCGGCTCCGCGGAGCGAGGCGGCCGTGATG GACTCCGACTACCGGTCATTCCTCGAGATCGTGTTCGAGAACAGCGAGGACAGCGTCCAG ATCTGGCACCTCGACGGCTACAGCTTGTTCGTAGTTGGGATGGACAGGGGAGTGTGGAGC GAGCAGAGCAGGAAGAGCTACAACCTCGTCGACGCAGTCTCCCGGTGCACGGTTCAGGTG TACCCGAGGGCGTGGACGGCGGTGTTGGTGGCGCTGGACAATGTGGGGATGTGGAACCTC AGGTCGGAGGACTGGGCGCGCAGGTATCAGGGCCAGCAGTTCTACCTCCGCGTGTACACG CCGTCGCACTCGTTCCGCGACGAGCTCCCCATCCCGAGCAACGCGCTCCGCTGCGGCCGC GCCACCAACGCGAGCGGCAGAAGCCGAACCCTGTCGCGGTACTAG

Peptide Sequence

PEP ID	Os04t0561900-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:28127062:28130289:-1 gene:Os04g0561900 transcript:Os04t0561900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rice microspore-preferred 2 description:Cupredoxin domain containing protein. (Os04t0561900-01)
Sequence	MSSRRSMGALAAVCVCMFVFVSSARAEDPYRFFDWEVTTGNINPLGVQQQGILINGQFPG PEIDCQTNDNLIVNVHNRLSEPFLLSWNGLQHRKNSWQDGVSGTNCPIPPGQNFTYQMQA KDQIGSFFYFPSLAFHKAAGGFGAIRIRSRPLIPVPFDPPAGEYTMLIGDWYKTSHKALQ AMLDSGKQLPSPDGILINGKGPNGASFTVEQGKTYRLRVSNVGLQSTLNLRIQDHNMTLV EVEGTHTVQNTYSSLYVHAGQSLSVLFTANRPPGVYQITVSTRFAKRALNSSAVLRYAGS SATISSPPPPAGLADDIDFSLDQARSIRTNLTASGPRPNPQGSYHYGSINVTRTIRLANS AGRVAGKQRYAVNGVSFVEADTPLKLADYYRISDVFRLGGIPDAPPAGAAAAPRSEAAVM DSDYRSFLEIVFENSEDSVQIWHLDGYSLFVVGMDRGVWSEQSRKSYNLVDAVSRCTVQV YPRAWTAVLVALDNVGMWNLRSEDWARRYQGQQFYLRVYTPSHSFRDELPIPSNALRCGR ATNASGRSRTLSRY

Transcript Sequence

Transcript ID	Os04t0561900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:28127062:28130289:-1 gene:Os04g0561900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rice microspore-preferred 2 description:Cupredoxin domain containing protein. (Os04t0561900-01)
Sequence	AGAGTCCACAGCAGGCGCCGCGCGCGCTATCGATCTCCGCCGCCTGACCGCCGTACCACC GTCTCCCGGCAGCTAGCGTCGACCGGCGTCATGTCGTCACGGCGAAGCATGGGAGCCCTG GCCGCTGTCTGCGTCTGCATGTTCGTCTTCGTCTCCTCCGCACGGGCAGAAGATCCGTAT AGATTTTTCGATTGGGAGGTTACTACTGGGAACATCAATCCTCTCGGCGTCCAGCAGCAG GGTATTCTGATCAATGGGCAATTTCCGGGGCCGGAGATTGACTGCCAGACGAATGATAAC TTGATCGTCAACGTGCACAACCGTTTGTCGGAGCCGTTTCTTCTGTCATGGAACGGGCTT CAGCACAGGAAGAACTCGTGGCAGGACGGCGTGTCCGGCACGAACTGCCCGATCCCGCCG GGCCAGAACTTCACCTACCAAATGCAGGCCAAGGACCAGATCGGCAGCTTCTTCTACTTC CCGTCGCTCGCCTTCCACAAGGCCGCCGGCGGCTTTGGCGCCATCCGCATCCGCAGCCGC CCGCTGATCCCCGTCCCCTTCGATCCGCCGGCCGGCGAGTACACCATGCTGATCGGCGAC TGGTACAAGACCAGCCACAAGGCTCTGCAAGCCATGCTGGACAGTGGAAAGCAGCTGCCT TCCCCTGATGGCATCCTGATTAACGGCAAAGGTCCAAATGGCGCAAGCTTCACCGTTGAG CAAGGGAAGACGTACAGATTGCGCGTCTCCAACGTCGGCCTGCAGAGCACGCTCAATTTG AGGATCCAAGACCACAACATGACGCTGGTCGAGGTGGAGGGCACGCACACGGTGCAGAAC ACCTACAGCTCCCTCTACGTCCACGCCGGCCAGTCGCTGTCCGTGCTGTTCACGGCCAAC CGCCCGCCCGGCGTCTACCAAATCACCGTCTCCACCCGCTTCGCCAAGCGTGCACTCAAC TCGTCCGCCGTCCTGCGCTACGCCGGCTCGAGCGCCACCATCTCCTCACCGCCGCCACCG GCTGGCCTCGCCGACGACATCGACTTCTCGCTCGACCAGGCTCGCTCCATCAGGACGAAC CTGACGGCGAGCGGGCCACGGCCGAACCCGCAGGGCTCGTACCACTACGGCTCGATCAAC GTGACACGCACAATCCGGCTCGCCAACTCGGCGGGGCGCGTCGCCGGCAAGCAGCGGTAC GCCGTGAACGGCGTGTCGTTCGTGGAGGCCGACACGCCGCTCAAGCTGGCCGACTACTAC AGGATCAGCGACGTGTTCCGGCTCGGCGGCATCCCGGACGCGCCGCCCGCGGGCGCCGCG GCGGCTCCGCGGAGCGAGGCGGCCGTGATGGACTCCGACTACCGGTCATTCCTCGAGATC GTGTTCGAGAACAGCGAGGACAGCGTCCAGATCTGGCACCTCGACGGCTACAGCTTGTTC GTAGTTGGGATGGACAGGGGAGTGTGGAGCGAGCAGAGCAGGAAGAGCTACAACCTCGTC GACGCAGTCTCCCGGTGCACGGTTCAGGTGTACCCGAGGGCGTGGACGGCGGTGTTGGTG GCGCTGGACAATGTGGGGATGTGGAACCTCAGGTCGGAGGACTGGGCGCGCAGGTATCAG GGCCAGCAGTTCTACCTCCGCGTGTACACGCCGTCGCACTCGTTCCGCGACGAGCTCCCC ATCCCGAGCAACGCGCTCCGCTGCGGCCGCGCCACCAACGCGAGCGGCAGAAGCCGAACC CTGTCGCGGTACTAGTTGACAAACCGGCTGGTGCTTGTCAACGACCCTAACACAACACCA GGAGTTACTCGGCCATGACAAGTTTGGCCAGGTATATATACCGTATACGCAAATGCATCA AAGTTTTACTCGGCCATATCACAAGTTTGGCTGGTTGGGTTTATTTAGCGTGAGTTCAGT TTGTAAGGCGTAAATGAACTCCATATAAACAAGGGGTGGGACCAAAGTGTAGCCT