Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0559800-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:28049246:28056867:-1 gene:Os04g0559800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:YODA 1, OsYODA-2, YODA-2 description:Similar to YDA. (Os04t0559800-01)
Sequence	ATGCCACCATGGTGGGGGAAGTCTTTCTCAAAAGATGCTAAGAAAACCACAAAAGAAAAC CTCATCGATACATTTCATCGGTTGATAAGTCCAAATGATCAAAAGGGAAGCACGAAGTCG AAACGGAGTTGTAGACGTGGCAATGATTCATCTGTTGAAAAAAGCTGCCGATCTACCACA GTGTCACGTCCTACTTCACCGTCAAAAGAAGTTTCTCGCTGCCAAAGCTTTTCAGCTGAT AGACCACATGCCCATCCCCTCCCTATTCCTGGAGTACGTCCTCCAGTGACTCGGACTGTT TCTGATATCACTGAATCAAAGCCCATATTGGAAAAACGTGGCAAGCCACCACTGCTTCTA CCACTCCCTAAACCCAACCGGCCTCCGAGGAGGCATGGAAATAGTGAGGTTGTTTCAGAA ATAGTGGTTGCTTCTCCCTCTAGTAACTGTTCTGATAGTGATGATCATGGGGATTCTCAG CTTCAGAGTCCTGTTGGAAATGATGCCGAAAATGCAACACTTGTTACTTTAAAGAACAAG TCAAGTAATGCGCGCAAAGAATGTCCTGGACCTATTACGGCAAAGAATATGAAGGAGATA CACAGACCAGCTAATCAAGTACATGGTAGCCATATATTATCCACATCACCAAGGGGTGTC GCAGCTGACAGTTACCAATCCAATTTACAAAATCCCCGCCCATTAGTTCTGGATAGTGCT CCCAATAGTTTGATGTCAAGTCCTTCTAGAAGTCCAAGAAGAATATGTCCTGATCATATT CCAACTTCGGCCTTTTGGGCAGTGAAACCTCACACAGATGTAACTTTTGTTGGATCTGGT CAATGTTCCAGTCCAGGTTCAGGGCAAACATCTGGGCATAATTCTGTGGGTGGTGATATG CTAGCCCAGCTCTTTTGGCAGCCCAGCAGAAGTAGCCCAGAGTGTTCACCAATTCCAAGT CCAAGAATGACAAGTCCTGGCCCTAGTTCGAGGGTGCATAGTGGAAGTGTTTCACCATTG CATCCAAGGTCTGGAGGGATGGCCCCTGAATCTCCAACAAACCGTCATGATGATGGGAAG AAGAAGCAAACTCACAAACTTCCCCTACCACCACTGAGCATCTCTCACAGTTCATTTCAT CCAAATAACTCCACTCCAACTAGTCCTATTTCAGTACCTCGCAGCCCTGGTAGAACTGAG AATCCACCAAGTCCTGGGTCACGATGGAAGAAGGGGAAGCTAATTGGCCGTGGAACATTT GGTCATGTATATGTTGGCTTTAACAGTGATAGTGGTGAAATGTGTGCGATGAAAGAAGTT ACCCTATTCTTGGATGATCCTAAATCAAAGGAAAGTGCAAAGCAGTTGGGGCAGGAAATA TCACTATTGAGCCGCCTACAGCATCCAAATATCGTACAATACTATGGATCAGAAACGGTT GATGATAAGCTTTATATATACTTGGAGTATGTATCTGGTGGATCTATCCATAAACTTCTA CAAGAGTATGGACAGCTTGGTGAACAAGCAATACGCAGCTACACACAGCAGATACTTTCA GGGTTGGCTTATTTGCATGCGAAGAATACAGTCCATAGGGATATTAAAGGTGCAAATATA CTAGTAGATCCTAGTGGTCGTGTTAAGCTTGCAGATTTTGGAATGGCAAAACATATCAAT GGGCAGCAGTGTCCTTTCTCCTTTAAGGGTAGTCCATATTGGATGGCTCCAGAGGTTATA AAAAACTCAAATGGGTGCAACCTAGCTGTTGACATATGGAGTTTGGGATGCACTGTCCTG GAGATGGCTACATCGAAACCGCCATGGAGCCAGTATGAAGGGATTGCTGCAATGTTCAAG ATCGGAAATAGCAAGGAACTTCCACCAATACCAGATCACCTTTCAGAGCCAGGCAAGGAC TTCATCAGAAAGTGCCTGCAACGTGATCCTTCTCAACGTCCCACTGCAATGGAGCTTTTG CAGCACCCATTTGTTCAAAAAGCAGTATCACTAGAGAAATCTGTTCTTTCTGAACCATTG GAACATTTGGCTGTTATATCTTGTAGATCGAGCGCCAAGATGGCTGCGCATACAAGAAAT ATTTCCTCATTGGGATTGGAGGGTCAGACAATTTACCAGAGAAGAGGTGCAAAATTTTCT TCAAAACACAGTGATATCCGTATACGAAGCAATATATCTTGTCCAGTTTCTCCATGTGGA AGTCCTTTGCTAAAATCAAGGTCCCCACAACATTCCAATGGCAGAATGTCACCTTCTCCT ATTTCAAGCCCCAGAACTACTTCAGGCACCTCCACGCCTCTGTCTGGTGGTAATGGTGCT ATTCCTTTTAACCATCTGAAGCAATCAACCTACAGCAACGAGGGATTTGCAATCCCATCA AGAAGCCCGGATGATCTCTTTGCCAGCCGGCCTACAGATCCTGATCTTGGGCAATTTATT CGAGTGCATCAAGTCTCTCAGGGGCTTCAGGAGAGGGTGGTATCTGAAGCTGACATTCTA AGCCCTCAGTTTGGAAAGAGACTTGGAAATGTTTTTGATTTGCGTGATAAGCTGTCACCA TCTGAACGTTTCACACATCATGCCTTTGTGGATCATGTGAAACTAAATCCTTCATTAGAC TTGACGTCTGGATCTCCACACCTTGGACTCAAGCATGGTAACTAA

Peptide Sequence

PEP ID	Os04t0559800-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:28049246:28056867:-1 gene:Os04g0559800 transcript:Os04t0559800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:YODA 1, OsYODA-2, YODA-2 description:Similar to YDA. (Os04t0559800-01)
Sequence	MPPWWGKSFSKDAKKTTKENLIDTFHRLISPNDQKGSTKSKRSCRRGNDSSVEKSCRSTT VSRPTSPSKEVSRCQSFSADRPHAHPLPIPGVRPPVTRTVSDITESKPILEKRGKPPLLL PLPKPNRPPRRHGNSEVVSEIVVASPSSNCSDSDDHGDSQLQSPVGNDAENATLVTLKNK SSNARKECPGPITAKNMKEIHRPANQVHGSHILSTSPRGVAADSYQSNLQNPRPLVLDSA PNSLMSSPSRSPRRICPDHIPTSAFWAVKPHTDVTFVGSGQCSSPGSGQTSGHNSVGGDM LAQLFWQPSRSSPECSPIPSPRMTSPGPSSRVHSGSVSPLHPRSGGMAPESPTNRHDDGK KKQTHKLPLPPLSISHSSFHPNNSTPTSPISVPRSPGRTENPPSPGSRWKKGKLIGRGTF GHVYVGFNSDSGEMCAMKEVTLFLDDPKSKESAKQLGQEISLLSRLQHPNIVQYYGSETV DDKLYIYLEYVSGGSIHKLLQEYGQLGEQAIRSYTQQILSGLAYLHAKNTVHRDIKGANI LVDPSGRVKLADFGMAKHINGQQCPFSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVL EMATSKPPWSQYEGIAAMFKIGNSKELPPIPDHLSEPGKDFIRKCLQRDPSQRPTAMELL QHPFVQKAVSLEKSVLSEPLEHLAVISCRSSAKMAAHTRNISSLGLEGQTIYQRRGAKFS SKHSDIRIRSNISCPVSPCGSPLLKSRSPQHSNGRMSPSPISSPRTTSGTSTPLSGGNGA IPFNHLKQSTYSNEGFAIPSRSPDDLFASRPTDPDLGQFIRVHQVSQGLQERVVSEADIL SPQFGKRLGNVFDLRDKLSPSERFTHHAFVDHVKLNPSLDLTSGSPHLGLKHGN

Transcript Sequence

Transcript ID	Os04t0559800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:28049246:28056867:-1 gene:Os04g0559800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:YODA 1, OsYODA-2, YODA-2 description:Similar to YDA. (Os04t0559800-01)
Sequence	GGCCTGGGCCTTTTTCCGTTGCTACCCTCCTCTCCCCCCTCCCCTTTCCGATTCCCCCAC TTTCCGCGAGCTCCTCCTCTCCTTTTGCCCGCACCATCACCACCACCACCGCCTCCAGAT TCCCCTCCGGCTTTCCCTCCGCCTGTCGGATCTCCCCCCCGCCGGCGAGCTCGCCTCGCC GTGGTGGCGCGCCGGTAAGCCTTTTGGGGGTAAAGAAGGTGCCTGACACCACCTTGTGGT CATCAATTTGTCTGCTTCTAGCTCCATTGCCAGTGCATTGCGGAAGCTGGGGGTTCTATA TGGGTTGTTAAGAAAATCGTGCGCTACACATGTTAATCTGATTGGCAGAATATGGTAATT ATCAGCTTGAATAACACCGTGATTAGTACCTAGCCAATTAGACATACCACAAATTATTTC ATATTCAATATGCCACCATGGTGGGGGAAGTCTTTCTCAAAAGATGCTAAGAAAACCACA AAAGAAAACCTCATCGATACATTTCATCGGTTGATAAGTCCAAATGATCAAAAGGGAAGC ACGAAGTCGAAACGGAGTTGTAGACGTGGCAATGATTCATCTGTTGAAAAAAGCTGCCGA TCTACCACAGTGTCACGTCCTACTTCACCGTCAAAAGAAGTTTCTCGCTGCCAAAGCTTT TCAGCTGATAGACCACATGCCCATCCCCTCCCTATTCCTGGAGTACGTCCTCCAGTGACT CGGACTGTTTCTGATATCACTGAATCAAAGCCCATATTGGAAAAACGTGGCAAGCCACCA CTGCTTCTACCACTCCCTAAACCCAACCGGCCTCCGAGGAGGCATGGAAATAGTGAGGTT GTTTCAGAAATAGTGGTTGCTTCTCCCTCTAGTAACTGTTCTGATAGTGATGATCATGGG GATTCTCAGCTTCAGAGTCCTGTTGGAAATGATGCCGAAAATGCAACACTTGTTACTTTA AAGAACAAGTCAAGTAATGCGCGCAAAGAATGTCCTGGACCTATTACGGCAAAGAATATG AAGGAGATACACAGACCAGCTAATCAAGTACATGGTAGCCATATATTATCCACATCACCA AGGGGTGTCGCAGCTGACAGTTACCAATCCAATTTACAAAATCCCCGCCCATTAGTTCTG GATAGTGCTCCCAATAGTTTGATGTCAAGTCCTTCTAGAAGTCCAAGAAGAATATGTCCT GATCATATTCCAACTTCGGCCTTTTGGGCAGTGAAACCTCACACAGATGTAACTTTTGTT GGATCTGGTCAATGTTCCAGTCCAGGTTCAGGGCAAACATCTGGGCATAATTCTGTGGGT GGTGATATGCTAGCCCAGCTCTTTTGGCAGCCCAGCAGAAGTAGCCCAGAGTGTTCACCA ATTCCAAGTCCAAGAATGACAAGTCCTGGCCCTAGTTCGAGGGTGCATAGTGGAAGTGTT TCACCATTGCATCCAAGGTCTGGAGGGATGGCCCCTGAATCTCCAACAAACCGTCATGAT GATGGGAAGAAGAAGCAAACTCACAAACTTCCCCTACCACCACTGAGCATCTCTCACAGT TCATTTCATCCAAATAACTCCACTCCAACTAGTCCTATTTCAGTACCTCGCAGCCCTGGT AGAACTGAGAATCCACCAAGTCCTGGGTCACGATGGAAGAAGGGGAAGCTAATTGGCCGT GGAACATTTGGTCATGTATATGTTGGCTTTAACAGTGATAGTGGTGAAATGTGTGCGATG AAAGAAGTTACCCTATTCTTGGATGATCCTAAATCAAAGGAAAGTGCAAAGCAGTTGGGG CAGGAAATATCACTATTGAGCCGCCTACAGCATCCAAATATCGTACAATACTATGGATCA GAAACGGTTGATGATAAGCTTTATATATACTTGGAGTATGTATCTGGTGGATCTATCCAT AAACTTCTACAAGAGTATGGACAGCTTGGTGAACAAGCAATACGCAGCTACACACAGCAG ATACTTTCAGGGTTGGCTTATTTGCATGCGAAGAATACAGTCCATAGGGATATTAAAGGT GCAAATATACTAGTAGATCCTAGTGGTCGTGTTAAGCTTGCAGATTTTGGAATGGCAAAA CATATCAATGGGCAGCAGTGTCCTTTCTCCTTTAAGGGTAGTCCATATTGGATGGCTCCA GAGGTTATAAAAAACTCAAATGGGTGCAACCTAGCTGTTGACATATGGAGTTTGGGATGC ACTGTCCTGGAGATGGCTACATCGAAACCGCCATGGAGCCAGTATGAAGGGATTGCTGCA ATGTTCAAGATCGGAAATAGCAAGGAACTTCCACCAATACCAGATCACCTTTCAGAGCCA GGCAAGGACTTCATCAGAAAGTGCCTGCAACGTGATCCTTCTCAACGTCCCACTGCAATG GAGCTTTTGCAGCACCCATTTGTTCAAAAAGCAGTATCACTAGAGAAATCTGTTCTTTCT GAACCATTGGAACATTTGGCTGTTATATCTTGTAGATCGAGCGCCAAGATGGCTGCGCAT ACAAGAAATATTTCCTCATTGGGATTGGAGGGTCAGACAATTTACCAGAGAAGAGGTGCA AAATTTTCTTCAAAACACAGTGATATCCGTATACGAAGCAATATATCTTGTCCAGTTTCT CCATGTGGAAGTCCTTTGCTAAAATCAAGGTCCCCACAACATTCCAATGGCAGAATGTCA CCTTCTCCTATTTCAAGCCCCAGAACTACTTCAGGCACCTCCACGCCTCTGTCTGGTGGT AATGGTGCTATTCCTTTTAACCATCTGAAGCAATCAACCTACAGCAACGAGGGATTTGCA ATCCCATCAAGAAGCCCGGATGATCTCTTTGCCAGCCGGCCTACAGATCCTGATCTTGGG CAATTTATTCGAGTGCATCAAGTCTCTCAGGGGCTTCAGGAGAGGGTGGTATCTGAAGCT GACATTCTAAGCCCTCAGTTTGGAAAGAGACTTGGAAATGTTTTTGATTTGCGTGATAAG CTGTCACCATCTGAACGTTTCACACATCATGCCTTTGTGGATCATGTGAAACTAAATCCT TCATTAGACTTGACGTCTGGATCTCCACACCTTGGACTCAAGCATGGTAACTAATATCAA GAATCAGTATTCAGATGGCATTTTTTGGAGCTTCGAAAGGTAACTGGTGGTTTGGCTGCT TTTTAGCCATCCGATGGCTTGAAGTGTATCATAGTATGAGGAAAAGAAAATCACTAATGT CTGTAGAAGCTAAAGTTGGCAATGGATGGAATCTTTGTTGTCATCAACACAATTCAAGTT GGCAAAGATATCGTCCATTCCTGTTAGGCAGAACTCCCGGAAGCATACTACAATTGGCGT ACTAACATCTGTCAAATGACAAGACTGTATATTGGTACCCTACAGATTGAAGGACCTCCG AAGTAGTAGTTCGCCGCATGTATACTCCTCTTGCCTTTATATGTAACTTAATTTTCTATT TTCTTCTTGGCGTCCTGATGCCATTGTACAGAGGAACCTCAACTAAGAGCCAAGATTTTG CACAGGAGAAACAGTCCAGCCATTCAGTATCCTCTCTCACACAATATCTCACCTGAGGTT GAAACTACTGCTGCAAGTCAAACTGCATACTGAAAGTATTTTGTAGCAGAACTCAGCCAA TGAGCCAACTTATTCACTGTACCAGTTACTCTGGAAATTTATACAAAGAATCAGATCCTT GGTTAAACTAGCTTCTCCCGCATGTACATGTTCTTCAGATCTGCACCGTGAGCTATCTAT AAGACTATAACCATTACC