Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0559200-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:28016067:28021961:-1 gene:Os04g0559200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF3741 domain containing protein. (Os04t0559200-01);Hypothetical conserved gene. (Os04t0559200-02);Hypothetical conserved gene. (Os04t0559200-03)
Sequence	ATGTTCTCCTCTATCATGGCAAAGAAGAGTTACAAACAGCGGTGCAAATCTGAGAAGGTC CATATGGGCTGTATGTCGGGCCTCATCCACATGTTTGACTTCCGTCGCAGTCCAAAACTT ATTTCAGATGGGACGATTAGGAGGAGTTCAGTCAGAAGTGACCTGAAAGGTTCTGAAGAT TTCCATGGAATCATCTTTTCTGATGAGGACAAAGACTATGGGGTTAAAACAATTCATGCC AGCAGGCCAAGTATTAAAGCACTGATGGAAGAAGAGATGGCCAGTGGAACGCAGATCTTG AAGGAAACACAAAGGAACATATTTGGGATACGTTCTGATGATTTGAAGTCTGTGAACCTG CAGGAAGGATCTGATGTTGACCTAGACTTGGCTACAAGTCTCATGGAATTATACAGAAAT CATAATGGCAGTCGCGATATTATCACTTCGGAAGTATCAGATCACTCTTCCAGTTTGATT GACAAAGAGCACAATACTGATGCTAGTACTCATCCTAAACAAATCTCCTGTAGTATAGAG AAAGCACTTGAAGCTGTGGCTGAAGCAGTAATAACCCATCAATCTGCAAACGGGAAATAC ACAAGCAGCAGCTACGAAGCTAGGCCCAATGAATTTCTTGATGCATTACAATTGCTGAGC GCAAACGAAGAGTTCTTTCTGATGCTTCTGAAAGACCCAAGCTCTAGGATGTTGCAATGC CTGCAGAACCTGTACACGGCACTAGGAAATCCCATGTTAGAACTGGCAGAAGATGACAAA CAAACAAAGTCGAAAGTTACCATTAACAGTCTAGAGCAGTCTGAGGTTTCGAAATACAGC GTGCAAAAAACACATAATTTTTTCTTGAAGGAGGATAAGCTAGTCATGAGGAGACCACCA AAACTGAATGATAGTCCTCGTGGCGTTAGCAGAATAGTAATATTGAAGCCAAGTCCTGGA AGAAGTCAGACTAGTCTGATTTCAAGTAGTGCAATGTCGTCACCAGTACAAACTCGTGCT GATTTGCAAGGTCAGGAACAAAGTGACAAATATGCTCGCCATTTCTCACTTAGAGAGCTT AAAAGGAGGCTAAGGCTTGCCATTAGTAACAATCGAAAGGATGTCATGAGTAGTACTTTC CAGAAAGATGATTCAACACAACAGTTCATTCTCGAGAGTATGTCGACAAGTATGGACTCT TCTGAATGTGAAAAGGCTGAGAAACCCTCAATAGTTGACAAGAAAACAATCCCTGAAGAT AGTGGAAGTGGCATGGGGAATGATGCCACTCATTGTGCTAGCTCTTTCTTCTACGAAAAA GCTAAGAAGCATCTAATCGAGAGGCTAGACAATCAAAAGAATGACACTTCTCAGATCGTA CACAAATCAGAACCCTTTGGGAAATTACTTTCATATTCGGAGAATGATACGTTTTCTCAA ACTGATTGTCCTCAAGAGGATGTTAAACTGTCAGAGGATTCGACTGCTTCATCAGCATTA CTGACGACTGAACAAGAGGATATTTCATCAAATTCTGACCCACCAATGAAGTTTGGGGAG CTAATACCATTGGACACCAGCACATCGGCTAACACACAGCTGGATGAATTTAAGACAGAC CATGCCAGTCATCCAGTCAAAGAGGGCACTATCTCGCAGGAGTTAACTAGTGAAGGGATT GACAGCATGAATGATGCAACAGATACCCCCCAAGTCTCTATTCAGATCGAAACTTCAACT GAAAGCTTGGAACAAATAAATACCGACCAATGCTTCGCAGAAGAGTCACAAACCATGAAT GCATTACCAGAAGTATCCCTGCACACTCCAGAAAAAGTTAACGAGCAATTCAATCATAGT CCATCGGCAGTTGTTGGATTAACCAAGCCATCCATCTTGACATTTTCTTGCTCCCCGGAG AATGCAGATGACAAAGAGGAGAGACTGAGCCCTCAATCTGTTCTAGATTCTTTCCTGGGA GATGGTATCAGCCCCAGCCACAAAACTCGAACGCAAGATGAATTGTCCATGCCAAGCACA AGGATTCTGTTTAAAGAGGATGACACTCCCTCGGGAACCCCAACTTTGCAAAACACACCA CAAGAAGCTATTTTGGATGATAAACAGGCAAGGCTTTCCTTCATAAAGGTTGTGCTTGAG GCTTCAGACTTCTTGTCTGAGGAAAGTTCAGAGATATGGTATGTGGACGGATCACTGCTT GACACATCTGTATTGGCTGAAGTAGGAACTTTGTACTGCCTGACAGACGATGCGGTGTTT CTCTTTGATTGTGTGGAAGAAGCTCTTTGCAAGATCAGGGATAACTTTTTTGGTTGTGAC CCTTGGGTAGCTTATCTGAAACACAGTGTGAGGCCAGCTCCGGTAGGAACAGGGCTCATT CAAGAGGTGGATAATTGCATCGATTCTCTTGTCAGTGATGAGGTTCCAAGTACATTAGAT CGGGTGGTGCTGAAAGACCTGGAGAGTGGATCATGGATGGACCTTCGGGTTGATACTGAA GAAGTTGCTATAGAGGTGTGGGATACTTTGCTTGATGATTTACTGGAGGAAATGGTGTTT GACTTGTGGCTTTAA

Peptide Sequence

PEP ID	Os04t0559200-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:28016067:28021961:-1 gene:Os04g0559200 transcript:Os04t0559200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF3741 domain containing protein. (Os04t0559200-01);Hypothetical conserved gene. (Os04t0559200-02);Hypothetical conserved gene. (Os04t0559200-03)
Sequence	MFSSIMAKKSYKQRCKSEKVHMGCMSGLIHMFDFRRSPKLISDGTIRRSSVRSDLKGSED FHGIIFSDEDKDYGVKTIHASRPSIKALMEEEMASGTQILKETQRNIFGIRSDDLKSVNL QEGSDVDLDLATSLMELYRNHNGSRDIITSEVSDHSSSLIDKEHNTDASTHPKQISCSIE KALEAVAEAVITHQSANGKYTSSSYEARPNEFLDALQLLSANEEFFLMLLKDPSSRMLQC LQNLYTALGNPMLELAEDDKQTKSKVTINSLEQSEVSKYSVQKTHNFFLKEDKLVMRRPP KLNDSPRGVSRIVILKPSPGRSQTSLISSSAMSSPVQTRADLQGQEQSDKYARHFSLREL KRRLRLAISNNRKDVMSSTFQKDDSTQQFILESMSTSMDSSECEKAEKPSIVDKKTIPED SGSGMGNDATHCASSFFYEKAKKHLIERLDNQKNDTSQIVHKSEPFGKLLSYSENDTFSQ TDCPQEDVKLSEDSTASSALLTTEQEDISSNSDPPMKFGELIPLDTSTSANTQLDEFKTD HASHPVKEGTISQELTSEGIDSMNDATDTPQVSIQIETSTESLEQINTDQCFAEESQTMN ALPEVSLHTPEKVNEQFNHSPSAVVGLTKPSILTFSCSPENADDKEERLSPQSVLDSFLG DGISPSHKTRTQDELSMPSTRILFKEDDTPSGTPTLQNTPQEAILDDKQARLSFIKVVLE ASDFLSEESSEIWYVDGSLLDTSVLAEVGTLYCLTDDAVFLFDCVEEALCKIRDNFFGCD PWVAYLKHSVRPAPVGTGLIQEVDNCIDSLVSDEVPSTLDRVVLKDLESGSWMDLRVDTE EVAIEVWDTLLDDLLEEMVFDLWL

Transcript Sequence

Transcript ID	Os04t0559200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:28016067:28021961:-1 gene:Os04g0559200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF3741 domain containing protein. (Os04t0559200-01);Hypothetical conserved gene. (Os04t0559200-02);Hypothetical conserved gene. (Os04t0559200-03)
Sequence	AGATATCAAAGTCCAATGCGGCAATGCCCCCCTCCATTAATCTGCGAAAAAAACCTGAAA AGTACAAAGCAAACCACCCTCCGAATCCTACCTTCTCCTTCCTGGAGAGGAAGGAAGAGA GATAATCGGAGCATATGATGAGGAGATGGTGGTAGCAGGAGCAGTGGTTGGCGGCTTGGC GCGGCCACAGAGGCATCCCATTCCCACGCGGCCTCGCCCAAGAATCCTCCTCTCCGGCCT CGACGCATGCTCCTGTTTTTGGAAGGAAACGAAGTGAAGAAAAAGATCAGAAAAGGCAAC TAGAATTCCAACAGCCTGTTCATTGTTCTGTGAAAAAGGGGCAGTTCTTTTGCAGTGTGT ATCCATTTATTCGCTGTTTCTTTTGGTGGTTTTTTTGGAGGCGGAAAAAAAATTCTGTTC GGGTGCCTGTTCCTGCGTGTTTCGAGGGTTTGCTCAGAGGAAGCAGAGGATCGAAGGGGG AAAGATTGTCTCTCTTTCTTTTTTTTTTCGCATTTGGGTTCTGAGATTGTTCCGCAACAG GGACCTTTCTTGCCTGTGAGATTCTGAATCGCCCGAGGCTGGAAAGATTGAAACTTCACG GCGAGGTCTGCATGTTTGGCTGAAGACGGAGGGGGATAAAGGAAGCAGAGGGTCGGTCTG ATGATGCAGTTCCGCAATCTTCTTTCCTTTTGCGTGTTCAGGTCTTGATGAGATATATTC CTTCCTGTCAAGTTTCTCAATTTTGACGTGAATTCCGAGTCCGGGGCATCTTGAGGAAAC CGAGGAAGCACGGCAGATACAAGGGTTTCTGTTGGGGCTATCGGATCATTTCTCATCTGT TTCTGCTTATCTTCTCTTGGTTTCGCGATTGCTCGAGATTCAAAGATTGGGTTTTGATTG TCTGGAGATTGAAGAAGCTAGTACCATTGTTGGGTACTTGGGTTCACGGCTCAAGGGTCA AAGAAAAGGGGCAGACATGGCTGTTCAGATGATTTAGCAGGTCATTGTGTAGGAACAGTT GTCAGGCGCCACCTTGCTTTTTCCTGTATTCATCTGGTCTGGGTTCTTCGAACTAAGGTT GTAAACTTGCCTGGTGATTAAACGAATCTGTCTGACAATGTTCTCCTCTATCATGGCAAA GAAGAGTTACAAACAGCGGTGCAAATCTGAGAAGGTCCATATGGGCTGTATGTCGGGCCT CATCCACATGTTTGACTTCCGTCGCAGTCCAAAACTTATTTCAGATGGGACGATTAGGAG GAGTTCAGTCAGAAGTGACCTGAAAGGTTCTGAAGATTTCCATGGAATCATCTTTTCTGA TGAGGACAAAGACTATGGGGTTAAAACAATTCATGCCAGCAGGCCAAGTATTAAAGCACT GATGGAAGAAGAGATGGCCAGTGGAACGCAGATCTTGAAGGAAACACAAAGGAACATATT TGGGATACGTTCTGATGATTTGAAGTCTGTGAACCTGCAGGAAGGATCTGATGTTGACCT AGACTTGGCTACAAGTCTCATGGAATTATACAGAAATCATAATGGCAGTCGCGATATTAT CACTTCGGAAGTATCAGATCACTCTTCCAGTTTGATTGACAAAGAGCACAATACTGATGC TAGTACTCATCCTAAACAAATCTCCTGTAGTATAGAGAAAGCACTTGAAGCTGTGGCTGA AGCAGTAATAACCCATCAATCTGCAAACGGGAAATACACAAGCAGCAGCTACGAAGCTAG GCCCAATGAATTTCTTGATGCATTACAATTGCTGAGCGCAAACGAAGAGTTCTTTCTGAT GCTTCTGAAAGACCCAAGCTCTAGGATGTTGCAATGCCTGCAGAACCTGTACACGGCACT AGGAAATCCCATGTTAGAACTGGCAGAAGATGACAAACAAACAAAGTCGAAAGTTACCAT TAACAGTCTAGAGCAGTCTGAGGTTTCGAAATACAGCGTGCAAAAAACACATAATTTTTT CTTGAAGGAGGATAAGCTAGTCATGAGGAGACCACCAAAACTGAATGATAGTCCTCGTGG CGTTAGCAGAATAGTAATATTGAAGCCAAGTCCTGGAAGAAGTCAGACTAGTCTGATTTC AAGTAGTGCAATGTCGTCACCAGTACAAACTCGTGCTGATTTGCAAGGTCAGGAACAAAG TGACAAATATGCTCGCCATTTCTCACTTAGAGAGCTTAAAAGGAGGCTAAGGCTTGCCAT TAGTAACAATCGAAAGGATGTCATGAGTAGTACTTTCCAGAAAGATGATTCAACACAACA GTTCATTCTCGAGAGTATGTCGACAAGTATGGACTCTTCTGAATGTGAAAAGGCTGAGAA ACCCTCAATAGTTGACAAGAAAACAATCCCTGAAGATAGTGGAAGTGGCATGGGGAATGA TGCCACTCATTGTGCTAGCTCTTTCTTCTACGAAAAAGCTAAGAAGCATCTAATCGAGAG GCTAGACAATCAAAAGAATGACACTTCTCAGATCGTACACAAATCAGAACCCTTTGGGAA ATTACTTTCATATTCGGAGAATGATACGTTTTCTCAAACTGATTGTCCTCAAGAGGATGT TAAACTGTCAGAGGATTCGACTGCTTCATCAGCATTACTGACGACTGAACAAGAGGATAT TTCATCAAATTCTGACCCACCAATGAAGTTTGGGGAGCTAATACCATTGGACACCAGCAC ATCGGCTAACACACAGCTGGATGAATTTAAGACAGACCATGCCAGTCATCCAGTCAAAGA GGGCACTATCTCGCAGGAGTTAACTAGTGAAGGGATTGACAGCATGAATGATGCAACAGA TACCCCCCAAGTCTCTATTCAGATCGAAACTTCAACTGAAAGCTTGGAACAAATAAATAC CGACCAATGCTTCGCAGAAGAGTCACAAACCATGAATGCATTACCAGAAGTATCCCTGCA CACTCCAGAAAAAGTTAACGAGCAATTCAATCATAGTCCATCGGCAGTTGTTGGATTAAC CAAGCCATCCATCTTGACATTTTCTTGCTCCCCGGAGAATGCAGATGACAAAGAGGAGAG ACTGAGCCCTCAATCTGTTCTAGATTCTTTCCTGGGAGATGGTATCAGCCCCAGCCACAA AACTCGAACGCAAGATGAATTGTCCATGCCAAGCACAAGGATTCTGTTTAAAGAGGATGA CACTCCCTCGGGAACCCCAACTTTGCAAAACACACCACAAGAAGCTATTTTGGATGATAA ACAGGCAAGGCTTTCCTTCATAAAGGTTGTGCTTGAGGCTTCAGACTTCTTGTCTGAGGA AAGTTCAGAGATATGGTATGTGGACGGATCACTGCTTGACACATCTGTATTGGCTGAAGT AGGAACTTTGTACTGCCTGACAGACGATGCGGTGTTTCTCTTTGATTGTGTGGAAGAAGC TCTTTGCAAGATCAGGGATAACTTTTTTGGTTGTGACCCTTGGGTAGCTTATCTGAAACA CAGTGTGAGGCCAGCTCCGGTAGGAACAGGGCTCATTCAAGAGGTGGATAATTGCATCGA TTCTCTTGTCAGTGATGAGGTTCCAAGTACATTAGATCGGGTGGTGCTGAAAGACCTGGA GAGTGGATCATGGATGGACCTTCGGGTTGATACTGAAGAAGTTGCTATAGAGGTGTGGGA TACTTTGCTTGATGATTTACTGGAGGAAATGGTGTTTGACTTGTGGCTTTAAGATTGTTT TGTTGCCATCCGATGGAAACTGATAGAGTTTATAGTTCGGCACTTCGGCAGGATTTTATT CACCAAAAACCATAGTACAAAAAGCTTTGAAAAAGTGAGTGTGACAGATTTAAACAGAGT GTATACAGCGCAGTAGAGTTAGGCTTGCCTGACTGTTTGCATCATACTATAAATCTTGAC TATATGTGGCTCCTAACACTAGGAATTTTTCTTCTTATTAATGCTTCTTCTATCATTTCT GTTCTCTGTACAGGTGTGAAAGTAGGAAGAATAAGTTCAGTTGTATATGTACTGCCTAAT TATAGTTTTTTTTTTCCTCATGAAAGTAAAACAATTTCCCTTGTTTATC