Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0555900-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:27823815:27826495:-1 gene:Os04g0555900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:serine racemase description:Pyridoxal phosphate-dependent enzyme, beta subunit domain containing protein. (Os04t0555900-01)
Sequence

ATGGGGAGCAGAGGTGGAAGTGGCGGCGATGGCGCAGAAAGCCATGGCTATGCCGCGGAC
ATCCACTCCATCAGGGAGGCGCAGGCTCGCATCGCACCATACGTGCACAAGACGCCCGTT
CTGTCATCAACATCGATCGATGCCATAGTGGGGAAGCAGCTGTTCTTCAAGTGCGAGTGC
TTCCAGAAGGCAGGGGCGTTCAAGATCCGAGGCGCTTCCAATTCGATATTTGCGCTTGAT
GATGATGAGGCATCCAAGGGCGTTGTGACGCATAGCAGTGGGAACCATGCTGCTGCAGTG
GCTCTTGCTGCAAAGCTACGCGGAATACCTGCTTACATTGTCATTCCAAGAAATGCACCG
GCATGTAAGGTTGACAATGTTAAGCGGTACGGTGGCCATATTATCTGGAGTGATGTCTCC
ATTGAATCAAGAGAATCTGTTGCTAAAAGAGTTCAGGAGGAAACTGGTGCTATTCTTGTT
CACCCATTCAATAATAAAAACACTATCAGTGGTCAAGGTACAGTGTCTCTCGAACTTTTG
GAGGAAGTCCCTGAAATTGACACAATAATTGTTCCAATCAGTGGTGGTGGTTTAATTTCT
GGTGTGGCACTGGCTGCCAAGGCCATAAACCCTTCAATACGTATTCTGGCAGCAGAACCA
AAGGGTGCTGATGATTCTGCCCAGTCCAAGGCTGCTGGAAAGATCATAACATTGCCTTCA
ACCAACACCATTGCTGATGGACTTCGAGCTTTTCTTGGTGACCTGACATGGCCGGTGGTG
CGCGACTTGGTGGATGATATCATTGTTGTGGATGACAATGCCATTGTGGACGCCATGAAA
ATGTGCTACGAGATGCTGAAGGTGGCTGTTGAGCCGAGTGGAGCAATAGGCCTCGCAGCC
GCCCTCTCTGACGAGTTTAAGCAAAGCTCTGCTTGGCATGAGAGCAGTAAGATAGGGATC
ATTGTTTCTGGAGGCAATGTTGACCTCGGTGTCCTCTGGGAGTCTCTCTATAAACGTTGA

Peptide Sequence

PEP ID

Os04t0555900-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:27823815:27826495:-1 gene:Os04g0555900 transcript:Os04t0555900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:serine racemase description:Pyridoxal phosphate-dependent enzyme, beta subunit domain containing protein. (Os04t0555900-01)
Sequence

MGSRGGSGGDGAESHGYAADIHSIREAQARIAPYVHKTPVLSSTSIDAIVGKQLFFKCEC
FQKAGAFKIRGASNSIFALDDDEASKGVVTHSSGNHAAAVALAAKLRGIPAYIVIPRNAP
ACKVDNVKRYGGHIIWSDVSIESRESVAKRVQEETGAILVHPFNNKNTISGQGTVSLELL
EEVPEIDTIIVPISGGGLISGVALAAKAINPSIRILAAEPKGADDSAQSKAAGKIITLPS
TNTIADGLRAFLGDLTWPVVRDLVDDIIVVDDNAIVDAMKMCYEMLKVAVEPSGAIGLAA
ALSDEFKQSSAWHESSKIGIIVSGGNVDLGVLWESLYKR

Transcript Sequence

Transcript ID

Os04t0555900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:27823815:27826495:-1 gene:Os04g0555900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:serine racemase description:Pyridoxal phosphate-dependent enzyme, beta subunit domain containing protein. (Os04t0555900-01)
Sequence

CTCTCCGCGCAAGATTTCTGCACCTGCTCCTCCAAATCCTCGGGCCTGATGGGGAGCAGA
GGTGGAAGTGGCGGCGATGGCGCAGAAAGCCATGGCTATGCCGCGGACATCCACTCCATC
AGGGAGGCGCAGGCTCGCATCGCACCATACGTGCACAAGACGCCCGTTCTGTCATCAACA
TCGATCGATGCCATAGTGGGGAAGCAGCTGTTCTTCAAGTGCGAGTGCTTCCAGAAGGCA
GGGGCGTTCAAGATCCGAGGCGCTTCCAATTCGATATTTGCGCTTGATGATGATGAGGCA
TCCAAGGGCGTTGTGACGCATAGCAGTGGGAACCATGCTGCTGCAGTGGCTCTTGCTGCA
AAGCTACGCGGAATACCTGCTTACATTGTCATTCCAAGAAATGCACCGGCATGTAAGGTT
GACAATGTTAAGCGGTACGGTGGCCATATTATCTGGAGTGATGTCTCCATTGAATCAAGA
GAATCTGTTGCTAAAAGAGTTCAGGAGGAAACTGGTGCTATTCTTGTTCACCCATTCAAT
AATAAAAACACTATCAGTGGTCAAGGTACAGTGTCTCTCGAACTTTTGGAGGAAGTCCCT
GAAATTGACACAATAATTGTTCCAATCAGTGGTGGTGGTTTAATTTCTGGTGTGGCACTG
GCTGCCAAGGCCATAAACCCTTCAATACGTATTCTGGCAGCAGAACCAAAGGGTGCTGAT
GATTCTGCCCAGTCCAAGGCTGCTGGAAAGATCATAACATTGCCTTCAACCAACACCATT
GCTGATGGACTTCGAGCTTTTCTTGGTGACCTGACATGGCCGGTGGTGCGCGACTTGGTG
GATGATATCATTGTTGTGGATGACAATGCCATTGTGGACGCCATGAAAATGTGCTACGAG
ATGCTGAAGGTGGCTGTTGAGCCGAGTGGAGCAATAGGCCTCGCAGCCGCCCTCTCTGAC
GAGTTTAAGCAAAGCTCTGCTTGGCATGAGAGCAGTAAGATAGGGATCATTGTTTCTGGA
GGCAATGTTGACCTCGGTGTCCTCTGGGAGTCTCTCTATAAACGTTGATTGGACAGTCCA
GTTTGTACCACTGATGAAATCTGTACCTGAATTTGAATAGACGGGGCTAGTAGCTGTAAA
ACCTGTAAATCCATTGGTTCCTTACAGGAAATTGCCTTGGCTGCTGAATTACTCGATGCA
GGAAATTGCATTGCCATTGACTTCAATACTTCAGTCTAGAGTGCTGATTGCTGAACTGCT
GGACATCTGGACC