Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0552400-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:27666027:27668280:1 gene:Os04g0552400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA129 description:Similar to OSIGBa0143N19.4 protein. (Os04t0552400-01)
Sequence

ATGTGTGAATCTTCACCGTCTTTGCATCATGGCCAGATGCAGCCGTCGCCGTCATCACCT
CGGGCACCGCCGCCGACGGCGGCGCAGGCGTCGGGGTACAAGCACTTCTGCAGAGTCTGC
AACAAGGGGTTCACGTGCGGAAGCGCCCTAGGCGGGCACATGAGGGCCCACGGCGTCGGC
GACGGCGATGGGTTGGGTGCCGATGATGACGACGACGACGACGACGATTCGCTCGGCGAT
GAGGCCGTGCGGCGTGCGCGCGGCGGGGCAGATGATCCTTGGAACGCGGGCGGCCCGTCG
TCGTCAGGGGCAGCGACACACGTCTACGAGCTCCGCACCAATCCTAACCGGGTCACGAGG
AGCCGCCAGGTGTGCAAGAACTGCGGGAAGGAGTTCACGTCGTGGGAGCATTTCCTCGAG
CACGGCAAGTGCAGCTCCGGCGAGGACGACGACGACGAGGACGACGTGGATCACTCGCTG
CAACCGTGGTCGCCTTCGCCCGAGGCCGACGGCGAAGAGGATTCTGCACCGGCCGCCGGT
TGGTTGAAAGGGAAGCGCTCGCGTCGCTGCAAGGGCACAGGAGTCGATTTGTCACCGACA
CCCTCAGCGTGCGCTGCCGGCGAGGAGGAGGACCTGGCCAATTGCCTGGTCATGCTCTCG
TCGTCCAAGGTAGATCAGGCAGGCGTCACTGAAGCAGAACAACGGTCATCTTCTTCCGCG
AGTAAGGAACATAAGAGACTGATCACGTTCATGGAGCCGACGACGTATGTACTGGATACA
GTGATGGCGCTTCCCCCGCCGGCGCCGGCGCCACAGTATGTCTCGACCGTGCCTCGAGGC
ATGTTCGAGTGCAAGGCGTGCAAGAAGGTTTTCTCTTCTCACCAAGCTCTCGGCGGGCAC
CGTGCCAGCCACAAGAAGGTGAAGGGCTGCTTCGCTGCCAAGCTGGAGAGCAACGCCGCA
GAGGTGGCTGAGCCATCACACCATGCAGAGGTCGCTGATCGGAGCGAGGACAATCCCGCC
AAGGCCACTTCTGATGCCAGGAGGAACGTGCACGCAAGCATCGACGGTGATGGAAACGCC
GGCACGAGCGATGCCGCGGCAGAACTGTCGATGGCCATCGTGCCCATAGAACCGCCGGTC
GCCGCGCTCGCCGCTGCACCGTTGAAGAAGAAGGGCAAGATGCACGAATGCTCGGTCTGC
CATCGACTGTTCACCTCCGGGCAGGCGCTTGGAGGCCACAAACGGTGCCACTGGCTGACG
TCAAGTTCGGCGGATCACACCGCCTCAGTCCCACCCCTAGCCGACGACCTTGTCCCGCTC
TCGTTCCGGCCAATGTTGGACGCACCGGAGCCCGCTCTCGACCTCAGCATCGCGGCGAAC
CCGCCACTGCTGGCCTCGGCCGCAACAGTCCGTCCGAAGGTCGGCGGCAGCTCGTTTCAT
CTCGACGCGCCACCACCGGTATACATCCCATCGTCGCCGGCGATACCCAGCCAACGGAAC
AAGGCTACCGCGACAACCGGCAGCCAGAACGCCAACGACGCGGTCGGGTTAAGCACCGCC
GCAGCAGAGGACGAGGCGGACAGCACCACCGTCAAGAGAGCGAGGCTTAGCGATCTCAAG
GACGTGAGCATGGCAGGGGAGACGACACCGTGGCTGCAAGTCGGCATTGGCTCCTCGTCT
CGCGGGGGTGCTGATGATAACGACAAGGAGTGA

Peptide Sequence

PEP ID

Os04t0552400-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:27666027:27668280:1 gene:Os04g0552400 transcript:Os04t0552400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA129 description:Similar to OSIGBa0143N19.4 protein. (Os04t0552400-01)
Sequence

MCESSPSLHHGQMQPSPSSPRAPPPTAAQASGYKHFCRVCNKGFTCGSALGGHMRAHGVG
DGDGLGADDDDDDDDDSLGDEAVRRARGGADDPWNAGGPSSSGAATHVYELRTNPNRVTR
SRQVCKNCGKEFTSWEHFLEHGKCSSGEDDDDEDDVDHSLQPWSPSPEADGEEDSAPAAG
WLKGKRSRRCKGTGVDLSPTPSACAAGEEEDLANCLVMLSSSKVDQAGVTEAEQRSSSSA
SKEHKRLITFMEPTTYVLDTVMALPPPAPAPQYVSTVPRGMFECKACKKVFSSHQALGGH
RASHKKVKGCFAAKLESNAAEVAEPSHHAEVADRSEDNPAKATSDARRNVHASIDGDGNA
GTSDAAAELSMAIVPIEPPVAALAAAPLKKKGKMHECSVCHRLFTSGQALGGHKRCHWLT
SSSADHTASVPPLADDLVPLSFRPMLDAPEPALDLSIAANPPLLASAATVRPKVGGSSFH
LDAPPPVYIPSSPAIPSQRNKATATTGSQNANDAVGLSTAAAEDEADSTTVKRARLSDLK
DVSMAGETTPWLQVGIGSSSRGGADDNDKE

Transcript Sequence

Transcript ID

Os04t0552400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:27666027:27668280:1 gene:Os04g0552400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA129 description:Similar to OSIGBa0143N19.4 protein. (Os04t0552400-01)
Sequence

AGGTTCAGGAGAACTCGCGGCATTGCTGCGATCGTGAGTTCGTGACACCGGACGGAGGCG
CGCACTTGATCGGCGCTCCCATCTCCAGGTCGAATTCGATTCCGCCGCGGCGAACCAAGC
GCATGCATGTGTGAATCTTCACCGTCTTTGCATCATGGCCAGATGCAGCCGTCGCCGTCA
TCACCTCGGGCACCGCCGCCGACGGCGGCGCAGGCGTCGGGGTACAAGCACTTCTGCAGA
GTCTGCAACAAGGGGTTCACGTGCGGAAGCGCCCTAGGCGGGCACATGAGGGCCCACGGC
GTCGGCGACGGCGATGGGTTGGGTGCCGATGATGACGACGACGACGACGACGATTCGCTC
GGCGATGAGGCCGTGCGGCGTGCGCGCGGCGGGGCAGATGATCCTTGGAACGCGGGCGGC
CCGTCGTCGTCAGGGGCAGCGACACACGTCTACGAGCTCCGCACCAATCCTAACCGGGTC
ACGAGGAGCCGCCAGGTGTGCAAGAACTGCGGGAAGGAGTTCACGTCGTGGGAGCATTTC
CTCGAGCACGGCAAGTGCAGCTCCGGCGAGGACGACGACGACGAGGACGACGTGGATCAC
TCGCTGCAACCGTGGTCGCCTTCGCCCGAGGCCGACGGCGAAGAGGATTCTGCACCGGCC
GCCGGTTGGTTGAAAGGGAAGCGCTCGCGTCGCTGCAAGGGCACAGGAGTCGATTTGTCA
CCGACACCCTCAGCGTGCGCTGCCGGCGAGGAGGAGGACCTGGCCAATTGCCTGGTCATG
CTCTCGTCGTCCAAGGTAGATCAGGCAGGCGTCACTGAAGCAGAACAACGGTCATCTTCT
TCCGCGAGTAAGGAACATAAGAGACTGATCACGTTCATGGAGCCGACGACGTATGTACTG
GATACAGTGATGGCGCTTCCCCCGCCGGCGCCGGCGCCACAGTATGTCTCGACCGTGCCT
CGAGGCATGTTCGAGTGCAAGGCGTGCAAGAAGGTTTTCTCTTCTCACCAAGCTCTCGGC
GGGCACCGTGCCAGCCACAAGAAGGTGAAGGGCTGCTTCGCTGCCAAGCTGGAGAGCAAC
GCCGCAGAGGTGGCTGAGCCATCACACCATGCAGAGGTCGCTGATCGGAGCGAGGACAAT
CCCGCCAAGGCCACTTCTGATGCCAGGAGGAACGTGCACGCAAGCATCGACGGTGATGGA
AACGCCGGCACGAGCGATGCCGCGGCAGAACTGTCGATGGCCATCGTGCCCATAGAACCG
CCGGTCGCCGCGCTCGCCGCTGCACCGTTGAAGAAGAAGGGCAAGATGCACGAATGCTCG
GTCTGCCATCGACTGTTCACCTCCGGGCAGGCGCTTGGAGGCCACAAACGGTGCCACTGG
CTGACGTCAAGTTCGGCGGATCACACCGCCTCAGTCCCACCCCTAGCCGACGACCTTGTC
CCGCTCTCGTTCCGGCCAATGTTGGACGCACCGGAGCCCGCTCTCGACCTCAGCATCGCG
GCGAACCCGCCACTGCTGGCCTCGGCCGCAACAGTCCGTCCGAAGGTCGGCGGCAGCTCG
TTTCATCTCGACGCGCCACCACCGGTATACATCCCATCGTCGCCGGCGATACCCAGCCAA
CGGAACAAGGCTACCGCGACAACCGGCAGCCAGAACGCCAACGACGCGGTCGGGTTAAGC
ACCGCCGCAGCAGAGGACGAGGCGGACAGCACCACCGTCAAGAGAGCGAGGCTTAGCGAT
CTCAAGGACGTGAGCATGGCAGGGGAGACGACACCGTGGCTGCAAGTCGGCATTGGCTCC
TCGTCTCGCGGGGGTGCTGATGATAACGACAAGGAGTGATTGATCTGCGAATTGATCAGT
ACATACATATATACTGTTACATTATTTCCATGCGTTTGCAATTGCATATATGTTGTTCGC
ATGAGCATATAAGTATTTGCCTTCTTTTTTGTGACTTTTTCTTTTCTTTTAGACTTGTAG
GTTTTTTTTTCTTCTCAAGATAGTGAGTATGTTTTACAAAGAGGTAACATATGAATTTGG
GAAGAGGCAGTAGACTTGTAGGATTTTTTTTTCTTCTGAAGAGAAGCAAGTAGTGAGTAT
TTTTTCACAAGAGGTAATGTATTAATCTGTCAAGCTGCGTGA