Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0552200-00
CDS Infomation

cds chromosome:IRGSP-1.0:4:27655668:27657079:1 gene:Os04g0552200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BETA-EXPANSIN 5 description:Beta-expansin 5. (Os04t0552200-00)
Sequence

ATGGTTAGCCGGGGCACTTTCGTTTTTGCCGTCCTAGTGGCGCTACCGATACTGTCACTC
CCCGTCTCTGGCTACGAGCAGAACTACACTGCCGGCAGACGGAGCACCATGTCGCTGGGC
AGAGGCTACGGCTGGTCCTCCGGCGGCGCGACGTGGTACGGCGGCCCGCAAGGCGACGGC
AGCGAAGGCGGCGCGTGCGGTTACCAGAGCGCCGTCGGGCAGCGCCCGTTCTCGTCGATG
ATCGCCGCCGGCGGGCCCTCCCTCTTCAAGAATGGCAAAGGCTGCGGCTCATGCTACCAA
ATTAAGTGCACCGGCAACCGGGCGTGCTCCGGCCGCCCAGTGACCGTCGTGATCACCGAC
TCCTGCCCTGGAGGGGTATGCCTGAACGAGGCGGCGCACTTCGACATGAGCGGCACCGCC
TTCGGCGCCATGGCCAACCGTGGCATGGGCGACCGCCTCCGCTCCGCCGGAGTCCTCAAG
ATCCAGTATAAGAGGGTGCCGTGCAGGTTTGCCATGAACGTGGCCTTCAAGGTGGACGCG
GGCTCCAACCCGTACTACCTCGCCATCCTGGTCCAGTACGCGAACGGCGACGGCGACCTC
GCCGCGGTGCACATCATGGAGGCCCGCGGCGGCGGCGGGTGGAAGGCGATGCAGCAGTCG
TGGGGCGCCACCTGGCGCCTCAACTCCAACACCGGGAAGCCGCTGAGCCCGCCGTTCTCG
ATCCGGCTCACCTCGGGCTCCGGCAAGGTGCTCGTCGCCAACAACGTCATCCCCTCCGGG
TGGCAGGCCGGGTTGACCTACCGATCCACCGTGAACTACGCCGCCTAA

Peptide Sequence

PEP ID

Os04t0552200-00
PEP Infomation

pep chromosome:IRGSP-1.0:4:27655668:27657079:1 gene:Os04g0552200 transcript:Os04t0552200-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BETA-EXPANSIN 5 description:Beta-expansin 5. (Os04t0552200-00)
Sequence

MVSRGTFVFAVLVALPILSLPVSGYEQNYTAGRRSTMSLGRGYGWSSGGATWYGGPQGDG
SEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGNRACSGRPVTVVITD
SCPGGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDA
GSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLSPPFS
IRLTSGSGKVLVANNVIPSGWQAGLTYRSTVNYAA

Transcript Sequence

Transcript ID

Os04t0552200-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:27655668:27657079:1 gene:Os04g0552200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BETA-EXPANSIN 5 description:Beta-expansin 5. (Os04t0552200-00)
Sequence

TCCCAGCTACCTAACCGATTGCCCAACAAGAAAATAGCAATGGTTAGCCGGGGCACTTTC
GTTTTTGCCGTCCTAGTGGCGCTACCGATACTGTCACTCCCCGTCTCTGGCTACGAGCAG
AACTACACTGCCGGCAGACGGAGCACCATGTCGCTGGGCAGAGGCTACGGCTGGTCCTCC
GGCGGCGCGACGTGGTACGGCGGCCCGCAAGGCGACGGCAGCGAAGGCGGCGCGTGCGGT
TACCAGAGCGCCGTCGGGCAGCGCCCGTTCTCGTCGATGATCGCCGCCGGCGGGCCCTCC
CTCTTCAAGAATGGCAAAGGCTGCGGCTCATGCTACCAAATTAAGTGCACCGGCAACCGG
GCGTGCTCCGGCCGCCCAGTGACCGTCGTGATCACCGACTCCTGCCCTGGAGGGGTATGC
CTGAACGAGGCGGCGCACTTCGACATGAGCGGCACCGCCTTCGGCGCCATGGCCAACCGT
GGCATGGGCGACCGCCTCCGCTCCGCCGGAGTCCTCAAGATCCAGTATAAGAGGGTGCCG
TGCAGGTTTGCCATGAACGTGGCCTTCAAGGTGGACGCGGGCTCCAACCCGTACTACCTC
GCCATCCTGGTCCAGTACGCGAACGGCGACGGCGACCTCGCCGCGGTGCACATCATGGAG
GCCCGCGGCGGCGGCGGGTGGAAGGCGATGCAGCAGTCGTGGGGCGCCACCTGGCGCCTC
AACTCCAACACCGGGAAGCCGCTGAGCCCGCCGTTCTCGATCCGGCTCACCTCGGGCTCC
GGCAAGGTGCTCGTCGCCAACAACGTCATCCCCTCCGGGTGGCAGGCCGGGTTGACCTAC
CGATCCACCGTGAACTACGCCGCCTAATGCGGCGGCGTCGTGCGCGACTACGTACGCGCG
TGTTTGTTAACGTCGCCGCGATAGATCCATCGCGAGGCAGAAGCTCGCCTCGTCGAAGTG
AGTTCGGTGTGTGCGCGTCCGGGAATCGTGCGCAGCCGCGGTAAAAGAGGAGTTCGATCT
GTTAGTGTTAAGTGTTCGTGATGTGTGTTCTCCCTCCGTGGCCGTTTGCAGAGCTGCTTC
TAGTGACGTCTCTTGCTTGGTTATAACTTAACCGAATTCTGCGTTGCGATTTGCACT