Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0550600-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:27567824:27570449:1 gene:Os04g0550600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DWARF SLENDER DWARF, TILLERING description:Carotenoid oxygenase family protein. (Os04t0550600-01)
Sequence	ATGGCAACACAAGCGATTGCACCGATGCACGCCGCCGTCGTGCACCGCCACCACGTTCTA CCACCCCGCCGCTGCGTGCGCCGCCGTGGCGTCTTCGTCCGCGCCTCGGCCGCCGCCGCC GCCGCCGCCGCCGAGACGGACACGCTGTCCGCGGCCTTCTGGGACTACAACCTCCTCTTC CGGTCGCAGCGCGACGAGTGCCTCGACTCCATCCCGCTCCGCGTCACCGAGGGCGCGATC CCGCCCGACTTCCCGGCCGGCACCTACTACCTCGCCGGGCCGGGCATCTTCTCCGACGAC CACGGCTCCACCGTCCACCCCCTCGACGGCCACGGCTACCTCCGCTCCTTCCGCTTCCGG CCCGGCGACCGCACCATCCACTACTCCGCGCGGTTCGTGGAGACGGCGGCGAAGAGGGAG GAGAGCCGGGACGGCGCGTCGTGGCGGTTCACGCACCGGGGGCCCTTCTCCGTGCTGCAG GGCGGGAAGAAGGTGGGCAATGTGAAGGTGATGAAGAACGTGGCCAACACCAGCGTGCTG CGGTGGGGCGGCCGGCTGCTCTGCCTCTGGGAGGGCGGCCAGCCGTACGAGGTTGACCCC CGGACGCTCGAGACCGTCGGCCCGTTCGACCTGCTCGGCCTCGCCGCCGCCGACGACAAC AAGGCAACGAACGCGTCTGCAGCACGACGGCCGTGGCTGCAGGAGGCCGGCCTCGACGCC GCCGCGCGCCTGCTGCGCCCTGTTCTTAGCGGGGTGTTCGACATGCCGGGCAAGAGGCTG CTGGCGCACTACAAGATCGACCCGCGGCGGGGGCGTCTGCTGATGGTCGCCTGCAACGCC GAGGACATGCTCCTCCCGCGATCCCACTTCACTTTCTACGAGTTCGACGCCCACTTCGAC CTCGTCCAGAAGCGTGAGTTCGTCGTGCCGGACCACCTCATGATCCACGACTGGGCCTTC ACCGACACCCACTACATCCTCCTCGGCAACAGGATCAAGCTCGACATCCCCGGATCGCTG CTGGCATTGACGGGCACTCACCCGATGATCGCGGCGCTGGCCGTGGACCCGAGAAGGCAG TCGACGCCGGTGTACCTGCTTCCGCGCTCCCCGGAGACCGAGGCGGGCGGCCGCGACTGG AGCGTGCCGATCGAGGCGCCGTCGCAGATGTGGTCCGTGCACGTCGGCAACGCGTTCGAG GAGGCGAACCGCCGGGGCGGCCTCGACGTCCGGCTGCACATGTCAAGCTGCTCCTACCAG TGGTTCCATTTCCACAGGATGTTTGGTTACAATTGGCACCACAAGAAGCTGGACCCGTCG TTCATGAACGCGGCGAAGGGAAAGGAGTGGCTGCCTCGCCTCGTTCAGGTGGCCATCGAG CTCGACAGGACGGGAGAGTGCCGGAGGTGCTCAGTCAGGAGGCTGTCCGATCAGCACGCC AGGCCGGCGGACTTCCCGGCGATAAACCCAAGCTACGCCAACCAGAGGAACCGGTTCGTC TACGCCGGCGCCGCGTCCGGCTCCCGCAGATTCCTCCCGTACTTCCCGTTCGACAGCGTG GTGAAGGTCGACGTCTCCGATGGATCGGCGCGGTGGTGGTCTACCGACGGGCGCAAGTTC GTCGGCGAGCCGGTCTTCGTCCCGACCGGCGGCGGAGAGGATGGTGGCTATGTTCTTCTT GTAGAGTATGCAGTCTCCAAGCACAGATGCCATCTAGTGGTGCTGGATGCAAAGAAGATA GGGACAGAGAATGCACTTGTGGCAAAACTAGAGGTGCCAAAGAACCTCACTTTTCCAATG GGATTCCATGGTTTCTGGGGAGATGAATGA

Peptide Sequence

PEP ID	Os04t0550600-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:27567824:27570449:1 gene:Os04g0550600 transcript:Os04t0550600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DWARF SLENDER DWARF, TILLERING description:Carotenoid oxygenase family protein. (Os04t0550600-01)
Sequence	MATQAIAPMHAAVVHRHHVLPPRRCVRRRGVFVRASAAAAAAAAETDTLSAAFWDYNLLF RSQRDECLDSIPLRVTEGAIPPDFPAGTYYLAGPGIFSDDHGSTVHPLDGHGYLRSFRFR PGDRTIHYSARFVETAAKREESRDGASWRFTHRGPFSVLQGGKKVGNVKVMKNVANTSVL RWGGRLLCLWEGGQPYEVDPRTLETVGPFDLLGLAAADDNKATNASAARRPWLQEAGLDA AARLLRPVLSGVFDMPGKRLLAHYKIDPRRGRLLMVACNAEDMLLPRSHFTFYEFDAHFD LVQKREFVVPDHLMIHDWAFTDTHYILLGNRIKLDIPGSLLALTGTHPMIAALAVDPRRQ STPVYLLPRSPETEAGGRDWSVPIEAPSQMWSVHVGNAFEEANRRGGLDVRLHMSSCSYQ WFHFHRMFGYNWHHKKLDPSFMNAAKGKEWLPRLVQVAIELDRTGECRRCSVRRLSDQHA RPADFPAINPSYANQRNRFVYAGAASGSRRFLPYFPFDSVVKVDVSDGSARWWSTDGRKF VGEPVFVPTGGGEDGGYVLLVEYAVSKHRCHLVVLDAKKIGTENALVAKLEVPKNLTFPM GFHGFWGDE

Transcript Sequence

Transcript ID	Os04t0550600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:27567824:27570449:1 gene:Os04g0550600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DWARF SLENDER DWARF, TILLERING description:Carotenoid oxygenase family protein. (Os04t0550600-01)
Sequence	AACGACCGAAGGAGGCCAAGTCCAAAGATGGCAACACAAGCGATTGCACCGATGCACGCC GCCGTCGTGCACCGCCACCACGTTCTACCACCCCGCCGCTGCGTGCGCCGCCGTGGCGTC TTCGTCCGCGCCTCGGCCGCCGCCGCCGCCGCCGCCGCCGAGACGGACACGCTGTCCGCG GCCTTCTGGGACTACAACCTCCTCTTCCGGTCGCAGCGCGACGAGTGCCTCGACTCCATC CCGCTCCGCGTCACCGAGGGCGCGATCCCGCCCGACTTCCCGGCCGGCACCTACTACCTC GCCGGGCCGGGCATCTTCTCCGACGACCACGGCTCCACCGTCCACCCCCTCGACGGCCAC GGCTACCTCCGCTCCTTCCGCTTCCGGCCCGGCGACCGCACCATCCACTACTCCGCGCGG TTCGTGGAGACGGCGGCGAAGAGGGAGGAGAGCCGGGACGGCGCGTCGTGGCGGTTCACG CACCGGGGGCCCTTCTCCGTGCTGCAGGGCGGGAAGAAGGTGGGCAATGTGAAGGTGATG AAGAACGTGGCCAACACCAGCGTGCTGCGGTGGGGCGGCCGGCTGCTCTGCCTCTGGGAG GGCGGCCAGCCGTACGAGGTTGACCCCCGGACGCTCGAGACCGTCGGCCCGTTCGACCTG CTCGGCCTCGCCGCCGCCGACGACAACAAGGCAACGAACGCGTCTGCAGCACGACGGCCG TGGCTGCAGGAGGCCGGCCTCGACGCCGCCGCGCGCCTGCTGCGCCCTGTTCTTAGCGGG GTGTTCGACATGCCGGGCAAGAGGCTGCTGGCGCACTACAAGATCGACCCGCGGCGGGGG CGTCTGCTGATGGTCGCCTGCAACGCCGAGGACATGCTCCTCCCGCGATCCCACTTCACT TTCTACGAGTTCGACGCCCACTTCGACCTCGTCCAGAAGCGTGAGTTCGTCGTGCCGGAC CACCTCATGATCCACGACTGGGCCTTCACCGACACCCACTACATCCTCCTCGGCAACAGG ATCAAGCTCGACATCCCCGGATCGCTGCTGGCATTGACGGGCACTCACCCGATGATCGCG GCGCTGGCCGTGGACCCGAGAAGGCAGTCGACGCCGGTGTACCTGCTTCCGCGCTCCCCG GAGACCGAGGCGGGCGGCCGCGACTGGAGCGTGCCGATCGAGGCGCCGTCGCAGATGTGG TCCGTGCACGTCGGCAACGCGTTCGAGGAGGCGAACCGCCGGGGCGGCCTCGACGTCCGG CTGCACATGTCAAGCTGCTCCTACCAGTGGTTCCATTTCCACAGGATGTTTGGTTACAAT TGGCACCACAAGAAGCTGGACCCGTCGTTCATGAACGCGGCGAAGGGAAAGGAGTGGCTG CCTCGCCTCGTTCAGGTGGCCATCGAGCTCGACAGGACGGGAGAGTGCCGGAGGTGCTCA GTCAGGAGGCTGTCCGATCAGCACGCCAGGCCGGCGGACTTCCCGGCGATAAACCCAAGC TACGCCAACCAGAGGAACCGGTTCGTCTACGCCGGCGCCGCGTCCGGCTCCCGCAGATTC CTCCCGTACTTCCCGTTCGACAGCGTGGTGAAGGTCGACGTCTCCGATGGATCGGCGCGG TGGTGGTCTACCGACGGGCGCAAGTTCGTCGGCGAGCCGGTCTTCGTCCCGACCGGCGGC GGAGAGGATGGTGGCTATGTTCTTCTTGTAGAGTATGCAGTCTCCAAGCACAGATGCCAT CTAGTGGTGCTGGATGCAAAGAAGATAGGGACAGAGAATGCACTTGTGGCAAAACTAGAG GTGCCAAAGAACCTCACTTTTCCAATGGGATTCCATGGTTTCTGGGGAGATGAATGAGCA TAGAGCAAGCATCAGATCCAGTCTAACTCTGGAGAGAAATTGTCTTGAAAAGGCAAGAAT TTTGCCTCGTGTATTGATAAAAGAGAGTTTTGTGATAATCTGTACATGGTGGAGAGGAAT TATCAGGGGAACCAAATAACTACTGTACATCCAGTCT