Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0544900-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:27275331:27282735:-1 gene:Os04g0544900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alg9-like mannosyltransferase family protein. (Os04t0544900-01)
Sequence	ATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAGTACGGGTGGGACCTG TTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTACACCAAGGTGGAAGAG AGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTATCATATTGAGAAGTAT GATCATTTAGAATTTCCTGGTGTTGTCCCTCGGTCATTTATAGGAGCATTGGTTGTATCT GTTATCTCATCGCCTGCAGTCTTCGTAATGCATTTATGTCATGTTCCAAAGGTTTATGGT CTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACTTTGAGACTTCTCCGA GTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTATCTGATACTAACTGCT ACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAATGTCTTAGCTTTAGCT TTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGACGCACATTACAGGCC CTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTTCTTGGTACAATAGGA CTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATCAAATGTTGTGTAAGC ACTGCCATTATATGCATTGGCTTCACTGTACTGGTTGACTCTATACTGTGGCGGCGAATC CTGTGGCCAGAATTTGAGGTTTTGTGGTTTAATTCAGTTCTGAACCGGAGTTCAGAGTGG GGTACACATTCCATCCATTGGTACTTCACCTCAGCACTTCCACGCTCCATGCTGGTAGCA TATCCTCTTTGCATGGTCGGTGCTCTTCTTGACAGAAGGATAGTGCCATACATACTTCCA GTCTTCTCATTTGTTGTGCTTTATTCAAAGCTTCCACATAAGGAGCTTCGCTTCATTATG GCTTCGATTCCCATGCTTAATGTGTCTGCTTCACTAGCAGCAAGCAGAATATATAATAAC AGAAAGAAAACTGGGTGGAAGTTACTTTATGTTCTCATGATTGGTGGCTTTCTTTCCAGT CTAGGATACTCTGGTGTAACTTTCATGGCATCCTACAATAATTATCCTGGTGGATATGCT CTAAAGGCTCTACATGAAGCAGATTCTGTAATGAAGGACAAAATTGTTCACATTGATGCC TTCACTGCAATGAGTGGAGTTTCACGTTTCTGTGAAAGTGAATATCCTTGGAGATATTCT AAGGAGGAAAAAATTTCCATCGAGGAATATCAGGAAAGAAATTTCACATATCTGCTGAAT GAACACCGCCATATCAGTGGCTACAAGTGCTTGTTTGCCGTGGATGGATTCTCCAGAGCG AAAATTCAACCTCGAATCCCACTACTCTCACTGGTGAAAGAGCCAAAAGTGTTTGCACAT GGGAATACGAGAGACCCTGATATTCTTTCGCTGAATTGGCCCGGTTGCCCTTGA

Peptide Sequence

PEP ID	Os04t0544900-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:27275331:27282735:-1 gene:Os04g0544900 transcript:Os04t0544900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alg9-like mannosyltransferase family protein. (Os04t0544900-01)
Sequence	MAPPRPSPAARLLREYGWDLLLGSIAAFYAVMVPYTKVEESFNVQAMHDILYHNYHIEKY DHLEFPGVVPRSFIGALVVSVISSPAVFVMHLCHVPKVYGLLAVRIVLGSIILMTLRLLR VQVKRKFGHHAEAFYLILTATQFHLLFYSTRPLPNVLALAFVNLTYYFWFKGNHRRTLQA LIVAAVIFRCDMILLLGTIGLALLLSRSISLLEAIKCCVSTAIICIGFTVLVDSILWRRI LWPEFEVLWFNSVLNRSSEWGTHSIHWYFTSALPRSMLVAYPLCMVGALLDRRIVPYILP VFSFVVLYSKLPHKELRFIMASIPMLNVSASLAASRIYNNRKKTGWKLLYVLMIGGFLSS LGYSGVTFMASYNNYPGGYALKALHEADSVMKDKIVHIDAFTAMSGVSRFCESEYPWRYS KEEKISIEEYQERNFTYLLNEHRHISGYKCLFAVDGFSRAKIQPRIPLLSLVKEPKVFAH GNTRDPDILSLNWPGCP

Transcript Sequence

Transcript ID	Os04t0544900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:27275331:27282735:-1 gene:Os04g0544900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alg9-like mannosyltransferase family protein. (Os04t0544900-01)
Sequence	AAGCCGCGGAATTCCGGAAGCGACTCGCTCTCGTCGGCTCGTCGCACGCGCGAGCCCACT TTGCCGGCCACCGGGATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAG TACGGGTGGGACCTGTTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTAC ACCAAGGTGGAAGAGAGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTAT CATATTGAGAAGTATGATCATTTAGAATTTCCTGGTGTTGTCCCTCGGTCATTTATAGGA GCATTGGTTGTATCTGTTATCTCATCGCCTGCAGTCTTCGTAATGCATTTATGTCATGTT CCAAAGGTTTATGGTCTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACT TTGAGACTTCTCCGAGTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTAT CTGATACTAACTGCTACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAAT GTCTTAGCTTTAGCTTTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGA CGCACATTACAGGCCCTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTT CTTGGTACAATAGGACTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATC AAATGTTGTGTAAGCACTGCCATTATATGCATTGGCTTCACTGTACTGGTTGACTCTATA CTGTGGCGGCGAATCCTGTGGCCAGAATTTGAGGTTTTGTGGTTTAATTCAGTTCTGAAC CGGAGTTCAGAGTGGGGTACACATTCCATCCATTGGTACTTCACCTCAGCACTTCCACGC TCCATGCTGGTAGCATATCCTCTTTGCATGGTCGGTGCTCTTCTTGACAGAAGGATAGTG CCATACATACTTCCAGTCTTCTCATTTGTTGTGCTTTATTCAAAGCTTCCACATAAGGAG CTTCGCTTCATTATGGCTTCGATTCCCATGCTTAATGTGTCTGCTTCACTAGCAGCAAGC AGAATATATAATAACAGAAAGAAAACTGGGTGGAAGTTACTTTATGTTCTCATGATTGGT GGCTTTCTTTCCAGTCTAGGATACTCTGGTGTAACTTTCATGGCATCCTACAATAATTAT CCTGGTGGATATGCTCTAAAGGCTCTACATGAAGCAGATTCTGTAATGAAGGACAAAATT GTTCACATTGATGCCTTCACTGCAATGAGTGGAGTTTCACGTTTCTGTGAAAGTGAATAT CCTTGGAGATATTCTAAGGAGGAAAAAATTTCCATCGAGGAATATCAGGAAAGAAATTTC ACATATCTGCTGAATGAACACCGCCATATCAGTGGCTACAAGTGCTTGTTTGCCGTGGAT GGATTCTCCAGAGCGAAAATTCAACCTCGAATCCCACTACTCTCACTGGTGAAAGAGCCA AAAGTGTTTGCACATGGGAATACGAGAGACCCTGATATTCTTTCGCTGAATTGGCCCGGT TGCCCTTGAGGTGAGGATACTGATCGGATCTCTACCACAGGACCACTAACTGCCAATTGT GAAGATGCCCAGCCTGTGTAAATCACTGGATCAATCGAGCCCCTTCCCAAACCCCAGCTC GGAAGATACTACACCTTGCCACCTTTGGGCTATTCAAGGCTCACACTTTAGCGCAAAAAA CTCGCGTTTTTATGTTGAAACCATGTGCTTCGGTTTCTGACCTAGTTGCTCGTATCTGGT GGCCAAAAGGAGGGGAAAAAAAACTGAGGAATAGGAGAGACCATAACAATCTTGTGCTCT AGCAAGTTGCTCCATTTCATACACAAGTACCATGTATCCTATCTTACATTACGTCAACCC ACTTGCTGTATAGCGTGACTCTTGGCCGATG