Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0543900-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:27233575:27238105:1 gene:Os04g0543900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GLUTAMATE DEHYDROGENASE 2 description:Similar to glutamic dehydrogenase1. (Os04t0543900-01);Similar to Glutamate dehydrogenase 2. (Os04t0543900-02)
Sequence

ATGAACGCGCTCGCCGCCACCAGCCGTAACTTCCGGCAGGCCGCCAGGCTGCTCGGCCTC
GACTCCAAGCTCGAGAAGAGCCTCCTGATCCCGTTCCGCGAGATCAAGGTGGAATGCACC
ATCCCCAAAGACGATGGAACCTTGGCGTCCTTCATTGGGTTCCGCGTGCAGCACGACAAT
GCCCGCGGGCCAATGAAAGGTGGCATTCGCTATCACCCTGAGGTTGATCCAGATGAAGTA
AATGCACTTGCTCAACTAATGACATGGAAGACTGCTGTTGCAGCAATTCCATATGGTGGA
GCAAAGGGTGGGATTGGATGCGCTCCTGGTGAATTAAGCACGAGTGAGCTGGAGCGTTTG
ACACGTGTATTTACACAGAAAATTCATGATCTTATTGGAGCTCATACTGACGTGCCAGCT
CCTGACATGGGAACTAATTCACAGACCATGGCTTGGATTTTGGATGAGTACTCGAAATTC
CATGGTCATTCACCGGCAGTTGTCACTGGGAAGCCAATAGATCTTGGTGGATCATTAGGT
AGAGATGCTGCTACAGGAAGAGGTGTGATGTACGCTACTGAGGCTCTTTTGGCTGAACAT
GGAAAGTCCATTTCTGGATCAACCTTTGTTATCCAGGGTTTTGGTAATGTTGGTTCATGG
GCTGCACGAATCATCCATGAGAAGGGTGGCAAGGTGATTGCACTTGGAGATGTGACAGGC
TCAATCAGAAACAAGAATGGGTTAGACATACCTGCTCTGATGAAGCACAGAAATGAGGGT
GGTGCTTTGAAAGATTTTCATGATGCGGAAGTCATGGATTCTTCAGAGCTACTAGTGCAT
GAATGCGATGTTCTCATCCCATGCGCTTTAGGTGGAGTGCTCAACAGGGAAAATGCACCT
GATGTGAAGGCCAAATTTATAATTGAAGCTGCTAATCATCCAACTGATCCAGAAGCTGAC
GAGATTCTTGCCAAGAAGGGAGTGACCATATTACCTGACATTTACGCCAACTCCGGTGGT
GTGATCGTTAGCTATTTTGAGTGGGTTCAGAACATTCAAGGGTTCATGTGGGATGAGGAG
AAGGTGAACATGGAGCTCCACAAGTACATGAACAATTCTTTCCAGCACATCAAGGCCATG
TGTAAATCTCATGATTGCAACCTGAGGATGGGGGCGTTCACCCTGGGAGTCAACCGGGTT
GCACGTGCCACCCTCTTGAGGGGATGGGAGGCATGA

Peptide Sequence

PEP ID

Os04t0543900-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:27233575:27238105:1 gene:Os04g0543900 transcript:Os04t0543900-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GLUTAMATE DEHYDROGENASE 2 description:Similar to glutamic dehydrogenase1. (Os04t0543900-01);Similar to Glutamate dehydrogenase 2. (Os04t0543900-02)
Sequence

MNALAATSRNFRQAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFIGFRVQHDN
ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCAPGELSTSELERL
TRVFTQKIHDLIGAHTDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLG
RDAATGRGVMYATEALLAEHGKSISGSTFVIQGFGNVGSWAARIIHEKGGKVIALGDVTG
SIRNKNGLDIPALMKHRNEGGALKDFHDAEVMDSSELLVHECDVLIPCALGGVLNRENAP
DVKAKFIIEAANHPTDPEADEILAKKGVTILPDIYANSGGVIVSYFEWVQNIQGFMWDEE
KVNMELHKYMNNSFQHIKAMCKSHDCNLRMGAFTLGVNRVARATLLRGWEA

Transcript Sequence

Transcript ID

Os04t0543900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:27233575:27238105:1 gene:Os04g0543900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GLUTAMATE DEHYDROGENASE 2 description:Similar to glutamic dehydrogenase1. (Os04t0543900-01);Similar to Glutamate dehydrogenase 2. (Os04t0543900-02)
Sequence

ATCTTTGCTTTCTTGCTCCGCCTACCTGGATGGATGGATCCCCCCTCCCTATTAATACAG
CACGCTTCTTCCTCTTCCTCCTCACGATTCAAGCCAAACGCAGCCGGCCGACCTCCTCCC
GTGCCTTCCTCCTCGATCCCCGGAGAGAGAAAAAAGGCTCCATCTTTTTTCCTCTTTCCG
TTTTTGGGCGCGAACGCCTCGTCCCCCCCGGATCGATCTTGCTCGCGCGCGGTCCGTAGT
CGCGTGCTCTGTTCGAAAGGCGAGTCCCTTTTTTTTTTTCTTCTCCGGCCGCGGGCGCTA
ATTTTCTTGGAGGGCGACGCGCCACCTTTGGCCCGGCCATGAACGCGCTCGCCGCCACCA
GCCGTAACTTCCGGCAGGCCGCCAGGCTGCTCGGCCTCGACTCCAAGCTCGAGAAGAGCC
TCCTGATCCCGTTCCGCGAGATCAAGGTGGAATGCACCATCCCCAAAGACGATGGAACCT
TGGCGTCCTTCATTGGGTTCCGCGTGCAGCACGACAATGCCCGCGGGCCAATGAAAGGTG
GCATTCGCTATCACCCTGAGGTTGATCCAGATGAAGTAAATGCACTTGCTCAACTAATGA
CATGGAAGACTGCTGTTGCAGCAATTCCATATGGTGGAGCAAAGGGTGGGATTGGATGCG
CTCCTGGTGAATTAAGCACGAGTGAGCTGGAGCGTTTGACACGTGTATTTACACAGAAAA
TTCATGATCTTATTGGAGCTCATACTGACGTGCCAGCTCCTGACATGGGAACTAATTCAC
AGACCATGGCTTGGATTTTGGATGAGTACTCGAAATTCCATGGTCATTCACCGGCAGTTG
TCACTGGGAAGCCAATAGATCTTGGTGGATCATTAGGTAGAGATGCTGCTACAGGAAGAG
GTGTGATGTACGCTACTGAGGCTCTTTTGGCTGAACATGGAAAGTCCATTTCTGGATCAA
CCTTTGTTATCCAGGGTTTTGGTAATGTTGGTTCATGGGCTGCACGAATCATCCATGAGA
AGGGTGGCAAGGTGATTGCACTTGGAGATGTGACAGGCTCAATCAGAAACAAGAATGGGT
TAGACATACCTGCTCTGATGAAGCACAGAAATGAGGGTGGTGCTTTGAAAGATTTTCATG
ATGCGGAAGTCATGGATTCTTCAGAGCTACTAGTGCATGAATGCGATGTTCTCATCCCAT
GCGCTTTAGGTGGAGTGCTCAACAGGGAAAATGCACCTGATGTGAAGGCCAAATTTATAA
TTGAAGCTGCTAATCATCCAACTGATCCAGAAGCTGACGAGATTCTTGCCAAGAAGGGAG
TGACCATATTACCTGACATTTACGCCAACTCCGGTGGTGTGATCGTTAGCTATTTTGAGT
GGGTTCAGAACATTCAAGGGTTCATGTGGGATGAGGAGAAGGTGAACATGGAGCTCCACA
AGTACATGAACAATTCTTTCCAGCACATCAAGGCCATGTGTAAATCTCATGATTGCAACC
TGAGGATGGGGGCGTTCACCCTGGGAGTCAACCGGGTTGCACGTGCCACCCTCTTGAGGG
GATGGGAGGCATGAGGCCATTAACAACACTCATATCCATGTCCGAAAATGTTGGACGACC
AATGTCTGATCTGATAAATTCATCAGAAGTGGCCGGCTTGGAAGGAGCTCACTTGCAATA
ATATTCAAGATAGATCGGCGTCGGCGTCCTTCCACCGTTCCGGCGAAAAATAATAATAAA
TATATTAAGGGTACCTAACAAAAATGTGATGTTTCTTCTTTCGTTTTTACAAAAGGCCGA
TTCAATCGTGCGTGATTATAGTATTGACAAAAAATGGTGTAAGCTCTAGAGGCAATTTGA
ATTTCACAAAGGTTGTATTCTGTC