Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0542900-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:27191011:27194826:1 gene:Os04g0542900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to endonuclease, polyU-specific. (Os04t0542900-01)
Sequence	ATGCAGATCCTCCCTAAACCACTCGATCATCCCGCCCCCACTCCTCCTCCTCCTCATCCA GGTAGATCCCAACAGCCGATCAGATCTCCCACTCCATTATTCGCCTCGCCCATTGCCCCG TGGCCACGGGCGAAGCCGGAGGGAGGGGAGAGACGCGGTTCCTCGGTCGCCATGGACGGG CTCATCAAGGGGCTGATCAACGTGGCGATCGACGCCGTCGAAGGCGCCGGACGAGGTGAG CGGGGCGGCGAGGACGACGCGCCGAGGAGGCACCGCCCCGCGCGGGAGGAGGAGGAGGGC CGCGGCGACGAGCGGTCGCGGTCGACGTGGGCCGAGGTGGTCTCCGATCACAAGGGCGGC GAGGCGGAGGAGCGCCCGGACCATCGGAATTCGAGGCGGGATGGGAGGCAAGAGAGGAGG GAGGATGGGGATTGGGAGAGGGTGGATGGCCGGAAGCAGCATCAGCACAACCAGTATGAG GAAGAGTACAGGAGGGACAGTAGTAGCCGACGCCCACAGCAGCATCAGCAAGCGCCAGCT TACAGGAGGCAGCAACAGGATGGAGATGAGAGAAATGATGGAGGGTGGCAGACTGTTGGT GAGAAAAAGCATCATGGAAGGCCACAGCAGTCTGAAGCATGGAATGCATACAGAAGGCCA CCATCTGAACAACAGTACTGTGAGGATGCTGGTCAGATCCACCATGGCCTAAATGTAGAA CCAACCAGGGAGGAGCTCAACAGCTTATCAAGAGCTTGTAGCCGGCTGTGGGAACTCGAT ATGAACCGCCTAACACCTGGTAAGGACTACAGAATCGAATGTGGCGAAGGGAAGAAGGTA TATCAGAAGGGTGATATGGCATCTGAAACTTTGTTCAGCTGGCTAGGCGATGATGTGCTT AGAAAGCCCACCTACTCTCGTTTCTGCGCGCTTCTTGACAATTACAATCCACATCAAGGG TACAAAGAAGTTGTTACTCAGCAGGACAAGCACGAGGAAGTAGCATTTATTGAAGAGATT GCCAGGACAGCGCCAATCAAGTACTTACACCGGTATTTAGTGCTCAAGGGAGTCGCGTCT CAAGACTATGAGGACTTCAAGAGAATGCTGACATCGCTATGGTTCGATTTGTATGGAAGA GGTGGCAGTTCTAGCAGCTCTTCTGCATTTGAGCATGTGTTCGTTGGTGAGATCAAGGGA CGACGAGGACAGGGAGAGAATGAGGTCTCAGGATTCCATAATTGGATTCAGTTTTACCTG GAAGAAGCCAATGGGAATGTGGATTACCAAGGTTACATATTCCCAAGGAGGCGTGGGGAA TCGCCTGATTCAGAGACACAGCTATTGACTATTCAGTTTGAGTGGCACGGTGTTCTGAAA TCGGTATCCAGCACTCTGATTGGTGTCAGCCCTGAGTTTGAGGTTGCACTCTACACGCTC TGCTTCTTTATGGGAGGGGAAGATAACCGCGTTGAGATTGGCCCGTACGGAGTAAACATC AAGTGCTACCGAATGGGAAACAGCAAAATTGGGTCAGCATTTCCAATTGCAGATAACTGA

Peptide Sequence

PEP ID	Os04t0542900-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:27191011:27194826:1 gene:Os04g0542900 transcript:Os04t0542900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to endonuclease, polyU-specific. (Os04t0542900-01)
Sequence	MQILPKPLDHPAPTPPPPHPGRSQQPIRSPTPLFASPIAPWPRAKPEGGERRGSSVAMDG LIKGLINVAIDAVEGAGRGERGGEDDAPRRHRPAREEEEGRGDERSRSTWAEVVSDHKGG EAEERPDHRNSRRDGRQERREDGDWERVDGRKQHQHNQYEEEYRRDSSSRRPQQHQQAPA YRRQQQDGDERNDGGWQTVGEKKHHGRPQQSEAWNAYRRPPSEQQYCEDAGQIHHGLNVE PTREELNSLSRACSRLWELDMNRLTPGKDYRIECGEGKKVYQKGDMASETLFSWLGDDVL RKPTYSRFCALLDNYNPHQGYKEVVTQQDKHEEVAFIEEIARTAPIKYLHRYLVLKGVAS QDYEDFKRMLTSLWFDLYGRGGSSSSSSAFEHVFVGEIKGRRGQGENEVSGFHNWIQFYL EEANGNVDYQGYIFPRRRGESPDSETQLLTIQFEWHGVLKSVSSTLIGVSPEFEVALYTL CFFMGGEDNRVEIGPYGVNIKCYRMGNSKIGSAFPIADN

Transcript Sequence

Transcript ID	Os04t0542900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:27191011:27194826:1 gene:Os04g0542900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to endonuclease, polyU-specific. (Os04t0542900-01)
Sequence	TGGCAATCACCCACATCACATGCAGATCCTCCCTAAACCACTCGATCATCCCGCCCCCAC TCCTCCTCCTCCTCATCCAGGTAGATCCCAACAGCCGATCAGATCTCCCACTCCATTATT CGCCTCGCCCATTGCCCCGTGGCCACGGGCGAAGCCGGAGGGAGGGGAGAGACGCGGTTC CTCGGTCGCCATGGACGGGCTCATCAAGGGGCTGATCAACGTGGCGATCGACGCCGTCGA AGGCGCCGGACGAGGTGAGCGGGGCGGCGAGGACGACGCGCCGAGGAGGCACCGCCCCGC GCGGGAGGAGGAGGAGGGCCGCGGCGACGAGCGGTCGCGGTCGACGTGGGCCGAGGTGGT CTCCGATCACAAGGGCGGCGAGGCGGAGGAGCGCCCGGACCATCGGAATTCGAGGCGGGA TGGGAGGCAAGAGAGGAGGGAGGATGGGGATTGGGAGAGGGTGGATGGCCGGAAGCAGCA TCAGCACAACCAGTATGAGGAAGAGTACAGGAGGGACAGTAGTAGCCGACGCCCACAGCA GCATCAGCAAGCGCCAGCTTACAGGAGGCAGCAACAGGATGGAGATGAGAGAAATGATGG AGGGTGGCAGACTGTTGGTGAGAAAAAGCATCATGGAAGGCCACAGCAGTCTGAAGCATG GAATGCATACAGAAGGCCACCATCTGAACAACAGTACTGTGAGGATGCTGGTCAGATCCA CCATGGCCTAAATGTAGAACCAACCAGGGAGGAGCTCAACAGCTTATCAAGAGCTTGTAG CCGGCTGTGGGAACTCGATATGAACCGCCTAACACCTGGTAAGGACTACAGAATCGAATG TGGCGAAGGGAAGAAGGTATATCAGAAGGGTGATATGGCATCTGAAACTTTGTTCAGCTG GCTAGGCGATGATGTGCTTAGAAAGCCCACCTACTCTCGTTTCTGCGCGCTTCTTGACAA TTACAATCCACATCAAGGGTACAAAGAAGTTGTTACTCAGCAGGACAAGCACGAGGAAGT AGCATTTATTGAAGAGATTGCCAGGACAGCGCCAATCAAGTACTTACACCGGTATTTAGT GCTCAAGGGAGTCGCGTCTCAAGACTATGAGGACTTCAAGAGAATGCTGACATCGCTATG GTTCGATTTGTATGGAAGAGGTGGCAGTTCTAGCAGCTCTTCTGCATTTGAGCATGTGTT CGTTGGTGAGATCAAGGGACGACGAGGACAGGGAGAGAATGAGGTCTCAGGATTCCATAA TTGGATTCAGTTTTACCTGGAAGAAGCCAATGGGAATGTGGATTACCAAGGTTACATATT CCCAAGGAGGCGTGGGGAATCGCCTGATTCAGAGACACAGCTATTGACTATTCAGTTTGA GTGGCACGGTGTTCTGAAATCGGTATCCAGCACTCTGATTGGTGTCAGCCCTGAGTTTGA GGTTGCACTCTACACGCTCTGCTTCTTTATGGGAGGGGAAGATAACCGCGTTGAGATTGG CCCGTACGGAGTAAACATCAAGTGCTACCGAATGGGAAACAGCAAAATTGGGTCAGCATT TCCAATTGCAGATAACTGAATTCGTTCCATGCCTGCTCCTGCGTGTATGTGATTCCTTCA GCTTTCAGTTTCACGAAGTTATTAGTGTGCTGTTCGATTTGGTCGTTTACACAAAAGAAC CACATTGTTCAATTTGTTGTCACAATGTCTCTACTGAAAATTGTATTATTTGGATTAACC ATGCTGTACAAGTTGTAGTCACAAAGTCCTGTAATTTGTTTTTCTCAAAACCCGTAACAA AAAAATATCATCTCAGCACAAAAAAAAAATCCTTC