Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0541900-00
CDS Infomation

cds chromosome:IRGSP-1.0:4:27133017:27135484:1 gene:Os04g0541900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cysteine-type endopeptidase/ ubiquitin thiolesterase. (Os04t0541900-00)
Sequence

ATGCTTCCGGGAGGCGAGGACGGCGGCAAGCACCGCGGCGCCACCGCCGACGAGGAGGCC
GCCGCGACCGCGGCCTCGCTGAACGACCTATGCGCCACCGCCGGGGATGCGGGGGGGCTC
CCCGCGCTGGCGCCGTTCCCGAGGGCGGCGGTTTGGGCGGTCGCGGCGCTGCTCGCGGTG
GGGCTCGGCCTCGGCGCGCTCGTCCTCGCCGTCGTGCACAGCGCCGCACTGCTCGTGGTG
GCCGTGCTCCTCTCCGCGGCCGTCGTCGCGTTCCTCCTGTGGAATGCCGCGGCTTCCGCG
TCGGGGCGCGCCCTGCGGCGGTTCGTGGACGGGCTGCCCGCGTCCAGCCTCCGCTCCGCC
ACCGACGACCAGCTCGTCAAGATCACCGGTCTTGTTGCGTGCGGTGATATTTCACTGATT
TCTTCATACGAGAAAGTAGAGAATTGTGTATATACATCTACATTATTGCGAAAATGTGGA
AGATGGGGTTCTGAAGTAGCTAATCCTAAGAACCGCTGTTCCAAGTGGAAATTGACACAC
GCTGAGAGGTTTGCTGCTGATTTCTACATAACGGATGCAAAATCAGGTAAAAGAGCCTTG
GTGAAAGCTGGGCACGACTCGAGAGTAGTTCCCTTGATCGATGAAAATCTTCTGGTTACG
ACAAGCGGGAACACTGAGTTATCTTCAACCTTGAGGTGTTGGCTGGATGAAAGAAATATT
CCTTCTGAAGAATGTCAGCTTATCCGTCTCGAAGAAGGGTATATCGCTGAAGGTATGCGA
TTGAGCGTGATCGGAATTTTAAGCAAGAAAGATGGCGATCTCATGATACTTCCACCACCT
GAACCTATTTCTACAGGTTGTGTGTTTCTGTCGTTTCTCCTTCCAACTTATTTTGATGGT
ATTGTTCTGAGATTAGTTGATAGAAGCTATTTTATGCACAATTCTGGTGTTTCGTGA

Peptide Sequence

PEP ID

Os04t0541900-00
PEP Infomation

pep chromosome:IRGSP-1.0:4:27133017:27135484:1 gene:Os04g0541900 transcript:Os04t0541900-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cysteine-type endopeptidase/ ubiquitin thiolesterase. (Os04t0541900-00)
Sequence

MLPGGEDGGKHRGATADEEAAATAASLNDLCATAGDAGGLPALAPFPRAAVWAVAALLAV
GLGLGALVLAVVHSAALLVVAVLLSAAVVAFLLWNAAASASGRALRRFVDGLPASSLRSA
TDDQLVKITGLVACGDISLISSYEKVENCVYTSTLLRKCGRWGSEVANPKNRCSKWKLTH
AERFAADFYITDAKSGKRALVKAGHDSRVVPLIDENLLVTTSGNTELSSTLRCWLDERNI
PSEECQLIRLEEGYIAEGMRLSVIGILSKKDGDLMILPPPEPISTGCVFLSFLLPTYFDG
IVLRLVDRSYFMHNSGVS

Transcript Sequence

Transcript ID

Os04t0541900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:27133017:27135484:1 gene:Os04g0541900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cysteine-type endopeptidase/ ubiquitin thiolesterase. (Os04t0541900-00)
Sequence

AGCGGCGCGAGCTGATTATGCTTCCGGGAGGCGAGGACGGCGGCAAGCACCGCGGCGCCA
CCGCCGACGAGGAGGCCGCCGCGACCGCGGCCTCGCTGAACGACCTATGCGCCACCGCCG
GGGATGCGGGGGGGCTCCCCGCGCTGGCGCCGTTCCCGAGGGCGGCGGTTTGGGCGGTCG
CGGCGCTGCTCGCGGTGGGGCTCGGCCTCGGCGCGCTCGTCCTCGCCGTCGTGCACAGCG
CCGCACTGCTCGTGGTGGCCGTGCTCCTCTCCGCGGCCGTCGTCGCGTTCCTCCTGTGGA
ATGCCGCGGCTTCCGCGTCGGGGCGCGCCCTGCGGCGGTTCGTGGACGGGCTGCCCGCGT
CCAGCCTCCGCTCCGCCACCGACGACCAGCTCGTCAAGATCACCGGTCTTGTTGCGTGCG
GTGATATTTCACTGATTTCTTCATACGAGAAAGTAGAGAATTGTGTATATACATCTACAT
TATTGCGAAAATGTGGAAGATGGGGTTCTGAAGTAGCTAATCCTAAGAACCGCTGTTCCA
AGTGGAAATTGACACACGCTGAGAGGTTTGCTGCTGATTTCTACATAACGGATGCAAAAT
CAGGTAAAAGAGCCTTGGTGAAAGCTGGGCACGACTCGAGAGTAGTTCCCTTGATCGATG
AAAATCTTCTGGTTACGACAAGCGGGAACACTGAGTTATCTTCAACCTTGAGGTGTTGGC
TGGATGAAAGAAATATTCCTTCTGAAGAATGTCAGCTTATCCGTCTCGAAGAAGGGTATA
TCGCTGAAGGTATGCGATTGAGCGTGATCGGAATTTTAAGCAAGAAAGATGGCGATCTCA
TGATACTTCCACCACCTGAACCTATTTCTACAGGTTGTGTGTTTCTGTCGTTTCTCCTTC
CAACTTATTTTGATGGTATTGTTCTGAGATTAGTTGATAGAAGCTATTTTATGCACAATT
CTGGTGTTTCGTGAACTGATGTCAGAACTCATGAGATGTAAGTGTAACAGCTAACAATGC
TAGTGCAATGCCCTTGCCCC