Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0540600-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:27043982:27048900:-1 gene:Os04g0540600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aldehyde dehydrogenase domain containing protein. (Os04t0540600-01)
Sequence

ATGGGAAGGGTGGCGCCTAGCGTCGAGGAGGTCGGGGGCGAGCAGCCGCCGCCCGCGCTT
GGGCCCGGCGAGACCGTGAGCGGGACGGTGGCCGAGCTGAGGGCGGCGTACGAGAGCGGC
AGGACGCGGAGCCTGGAGTGGAGGCAGTCGCAGCTCCGGGGGCTCCTCCGGCTCTTGGCG
GAGGAGGAGGCCGCCGCGTTCCGGGCGCTCCGCGAGGACCTCGGCAAGCACCAAGCCGAG
GCCTACAGAGACGAGATCGGCGTGCTTGTCAAGTCGGCGAACGCCGCGCTGCGTGAGGTC
GGGAAATGGATGGCGCCGGAGAAGGTCTGGGTGCCGCTAATCGCGTTCCCGGCAAGGGCG
CAGCTGGAGCCGCAGCCGCTCGGGGTCATCCTCGTCTTCTCTTGCTGGAATGTCCCGTTG
GGCCTCTCTCTGGAGCCTCTCGTTGGAGCATTGGCGGCCGGCAATGCGGTCGCGCTGAAG
CCATCGGAGCTGGCGCCGGCCACCGCTAAGTTCCTCGGCGACAACGTCGGCAAATACATG
GACGCCACGGCCGTGAAGGTCATCCAGGGCGGGCCGGAGGTTGGCGAGCAGCTCATGGAA
CACAGATGGGACAAGGTCCTTTTCACCGGGAGCCCGCGCATCGCGCGCGTCGTGATGGCC
GCGGCCGCGAAGCACCTGACGCCCGTGGCGCTTGAGCTCGGCGGGAAGTGCCCCTGCATC
TTCGACACGATCGGCGGCAGCGCGCGGGACCTGCAGACCGCGGTGAACCGCGTCGTCGGG
GGCAAGTGGTCGTCCTGCGCCGGCCAGGCCTGCCTGGCCATCGACTACGTCCTCGTCGAG
GAGCGCTTCGTGCCCGTCCTGATCAAGGCGCTCAAGTCGACGCTGAAGAAGTTCTTCGCC
GACTCGGACCACATGGCGCGGATCGTCAACGCGAGGCACTTCCAGCGGCTGAGTGACCTT
CTCAAGGACAAATCGGTCGCGGCGTCCGTCCTCCACGGGGGCACATTGGACGCCAAGAAC
CTGTGCATCGAGCCCACGATTCTGCTGAATCCCCCACTCGACTCCGCGATCATGACAGAG
GAGATTTTCGGCCCTCTCCTGCCCATCATCACGGTGAAGAAGATAGAGGACAGCATCGCC
TTCGTGAGAGCGCGGCCGAGGCCGCTCGCCGTCTACGCGTTCACCAAAAACGCCGCACTG
AGGCGCCGAATCGTCGAGGAGACGTCGTCGGGGAGCGTTACGTTCAACGACGCAGTTGTA
CAATACGGGATCGATTCGCTGCCGTTCGGCGGCGTCGGCGAGAGCGGATTCGGGCAGTAC
CACGGCAAGTACTCCTTCGAGATGTTCAGCCACAAGAAGGCGGTTCTGACGAGAGGATAC
CTTATCGAGCTGACGGCCAGGTACCCGCCGTGGGATGACAGCAAGATCTCCATGATGCGA
CAGCTCTACCGTTACAATTACGTCGGATTCGTCTTAACCTTCCTCGGTCTAAAGAAGTGA

Peptide Sequence

PEP ID

Os04t0540600-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:27043982:27048900:-1 gene:Os04g0540600 transcript:Os04t0540600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aldehyde dehydrogenase domain containing protein. (Os04t0540600-01)
Sequence

MGRVAPSVEEVGGEQPPPALGPGETVSGTVAELRAAYESGRTRSLEWRQSQLRGLLRLLA
EEEAAAFRALREDLGKHQAEAYRDEIGVLVKSANAALREVGKWMAPEKVWVPLIAFPARA
QLEPQPLGVILVFSCWNVPLGLSLEPLVGALAAGNAVALKPSELAPATAKFLGDNVGKYM
DATAVKVIQGGPEVGEQLMEHRWDKVLFTGSPRIARVVMAAAAKHLTPVALELGGKCPCI
FDTIGGSARDLQTAVNRVVGGKWSSCAGQACLAIDYVLVEERFVPVLIKALKSTLKKFFA
DSDHMARIVNARHFQRLSDLLKDKSVAASVLHGGTLDAKNLCIEPTILLNPPLDSAIMTE
EIFGPLLPIITVKKIEDSIAFVRARPRPLAVYAFTKNAALRRRIVEETSSGSVTFNDAVV
QYGIDSLPFGGVGESGFGQYHGKYSFEMFSHKKAVLTRGYLIELTARYPPWDDSKISMMR
QLYRYNYVGFVLTFLGLKK

Transcript Sequence

Transcript ID

Os04t0540600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:27043982:27048900:-1 gene:Os04g0540600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aldehyde dehydrogenase domain containing protein. (Os04t0540600-01)
Sequence

ACTTTTTCGGTCCTAGCAACCGGCAGTAGTACCAATGATGCACCTTTGCACCAGTTTACA
ACAATAATGGACGTCAATTCTACTGAACCGCCCTGGTGCCAGCATTTAATTCGTATCATG
CATTCATGCGTAGCGTAGGCCATAGGCTCAAGCGCACGTCAGTTGCCATAAATTGGCCTC
GCCGGCCCGAGGCTTTCTTCAACTTTCTGCTTGCAAAGTTTCAATACACTGGAGTGAGTC
AGTGAGGTTGGTGAAGCAGAGTGAGGAAAGGAGGATGGGAAGGGTGGCGCCTAGCGTCGA
GGAGGTCGGGGGCGAGCAGCCGCCGCCCGCGCTTGGGCCCGGCGAGACCGTGAGCGGGAC
GGTGGCCGAGCTGAGGGCGGCGTACGAGAGCGGCAGGACGCGGAGCCTGGAGTGGAGGCA
GTCGCAGCTCCGGGGGCTCCTCCGGCTCTTGGCGGAGGAGGAGGCCGCCGCGTTCCGGGC
GCTCCGCGAGGACCTCGGCAAGCACCAAGCCGAGGCCTACAGAGACGAGATCGGCGTGCT
TGTCAAGTCGGCGAACGCCGCGCTGCGTGAGGTCGGGAAATGGATGGCGCCGGAGAAGGT
CTGGGTGCCGCTAATCGCGTTCCCGGCAAGGGCGCAGCTGGAGCCGCAGCCGCTCGGGGT
CATCCTCGTCTTCTCTTGCTGGAATGTCCCGTTGGGCCTCTCTCTGGAGCCTCTCGTTGG
AGCATTGGCGGCCGGCAATGCGGTCGCGCTGAAGCCATCGGAGCTGGCGCCGGCCACCGC
TAAGTTCCTCGGCGACAACGTCGGCAAATACATGGACGCCACGGCCGTGAAGGTCATCCA
GGGCGGGCCGGAGGTTGGCGAGCAGCTCATGGAACACAGATGGGACAAGGTCCTTTTCAC
CGGGAGCCCGCGCATCGCGCGCGTCGTGATGGCCGCGGCCGCGAAGCACCTGACGCCCGT
GGCGCTTGAGCTCGGCGGGAAGTGCCCCTGCATCTTCGACACGATCGGCGGCAGCGCGCG
GGACCTGCAGACCGCGGTGAACCGCGTCGTCGGGGGCAAGTGGTCGTCCTGCGCCGGCCA
GGCCTGCCTGGCCATCGACTACGTCCTCGTCGAGGAGCGCTTCGTGCCCGTCCTGATCAA
GGCGCTCAAGTCGACGCTGAAGAAGTTCTTCGCCGACTCGGACCACATGGCGCGGATCGT
CAACGCGAGGCACTTCCAGCGGCTGAGTGACCTTCTCAAGGACAAATCGGTCGCGGCGTC
CGTCCTCCACGGGGGCACATTGGACGCCAAGAACCTGTGCATCGAGCCCACGATTCTGCT
GAATCCCCCACTCGACTCCGCGATCATGACAGAGGAGATTTTCGGCCCTCTCCTGCCCAT
CATCACGGTGAAGAAGATAGAGGACAGCATCGCCTTCGTGAGAGCGCGGCCGAGGCCGCT
CGCCGTCTACGCGTTCACCAAAAACGCCGCACTGAGGCGCCGAATCGTCGAGGAGACGTC
GTCGGGGAGCGTTACGTTCAACGACGCAGTTGTACAATACGGGATCGATTCGCTGCCGTT
CGGCGGCGTCGGCGAGAGCGGATTCGGGCAGTACCACGGCAAGTACTCCTTCGAGATGTT
CAGCCACAAGAAGGCGGTTCTGACGAGAGGATACCTTATCGAGCTGACGGCCAGGTACCC
GCCGTGGGATGACAGCAAGATCTCCATGATGCGACAGCTCTACCGTTACAATTACGTCGG
ATTCGTCTTAACCTTCCTCGGTCTAAAGAAGTGAAAATTTGGTGGGAAGGAATTGGTGAT
CGCTTTTGTGGAGTTCAAAGTGAGTGCATTTAGCCCAAGAGACTACTGATGAGAATAAAT
ATAGACTTATATCGCTTAGTGAATAAGAACAAGATTTGCAGTTGCTAGTATAAAGCAGCA
AAAATGTACTGCCTGCATTATATAAGAAAAATGCGCTACCTGTAATTTACGTTTCGTCAA
GAAACCACCTTTTAAGTAAGGTAAATGTAAGGTACTAAGGTGCAATTTCAGTAGTTTTGG
GTTGAATTTCAGCC