Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0539800-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:27015657:27019587:-1 gene:Os04g0539800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Src homology-3 domain containing protein. (Os04t0539800-01)
Sequence	ATGGAGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGAGCAGGTCTCCCGCCAGGGCGTG TTTAAGCCATTTGGAGCTGCCTATGGAAATTCAGAAAATGCGTTTACAGATGAATCAGAA GTTAATCTACACCAGAGGCTGGAAAAACTTTACTTATCAACTCGTGCTGCTAAACATTTT CAAAGGGACATTGTCCGGGGTGTGGAGGGATACATAGTCACTGGATCTAAACAAGTTGAC ATAGGAAATAAATTGTCCGACGATAGCCAGAAATATGGCACTGGAAACACATGTACAAGT GATAACACTTTATCCAAGGCTGCTATGTACTATGGGAAGGCTCGTTCTCTGATGGAAAAG GAACGTGGGAACATGTTGAGAGCATTTGGTACACAGGTGGCAGAGCCACTGCGAGCAATG GTCATGGGTGCGCCTTTAGAAGATGCGAGACATCTAGCCCAAAGATATGACCGAATGAGG CAAGAAGCTGAAGCCCAGGCTGTTGAAGTTTCAAGACGGCAAAACAGAGTAAGAGAGTCA GCTCCGAATGGAGATGTGATAACAAAGCTGGAAGCTGCTGAATACAAACTTGAAGAACTT AAGTCAAGCATGGTAGGATTAGGGAAGGAAGCTGTTGCAGCAATGGCTGCCGTTGAGGCT CAGCAACAAAGATTGACATTACAGCGCCTTATTGCGATGGTTGAAGCCGAAAGAGCCTAC CATCAGAGAGTTCTGGAGATCCTTGACCACCTGGAACAAGAAATGGTATCAGAGCGTCAA AAGATTGAAGCACCTCCGACCCCATCAGCAGAAAATTACATGGCACAGCCACCACCATCT TATGACGAAGTCAATGGCATGTTTGCATCCTCCTCTGTCGATGATTCAGTGACATCTGTA GATTTCTTCCTAGGAGAGGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAAC TTGTCAGCTGGAGACATTGTTATTGTCCGGAAGATATCAACCAATGGTTGGGCAGAAGGC GAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCGAAAGACGAGAGCGAGTT CTAGCTAGCAAGGTTCCACATATTTTCTAG

Peptide Sequence

PEP ID	Os04t0539800-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:27015657:27019587:-1 gene:Os04g0539800 transcript:Os04t0539800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Src homology-3 domain containing protein. (Os04t0539800-01)
Sequence	MEALWKQASRLKEQVSRQGVFKPFGAAYGNSENAFTDESEVNLHQRLEKLYLSTRAAKHF QRDIVRGVEGYIVTGSKQVDIGNKLSDDSQKYGTGNTCTSDNTLSKAAMYYGKARSLMEK ERGNMLRAFGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAVEVSRRQNRVRES APNGDVITKLEAAEYKLEELKSSMVGLGKEAVAAMAAVEAQQQRLTLQRLIAMVEAERAY HQRVLEILDHLEQEMVSERQKIEAPPTPSAENYMAQPPPSYDEVNGMFASSSVDDSVTSV DFFLGEALDSFKAESESELNLSAGDIVIVRKISTNGWAEGECKGKAGWFPHGYIERRERV LASKVPHIF

Transcript Sequence

Transcript ID	Os04t0539800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:27015657:27019587:-1 gene:Os04g0539800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Src homology-3 domain containing protein. (Os04t0539800-01)
Sequence	GTGCGCCACCGTCGGCCGTGCGCGAGCCAAGCCAACCACCACGAGAAAGAAACTAACATC GGAGGAGCGACTAGCGAGCCGTCCTTCCCCAACCCCTCGTCGTCGTCGTCCAGCCTGAGA ACCAAACGAAGAAAAAGGAGGGGGAAAAAAGGGGAAAACGGGGAGAGGCTACCGACGCGG CAGGCCCGGCCGTCCTCCCCTCTCCCGGTCAGCGCGCCGCGGCTTTTTGCGTCCGGAGAG GCGGAGACGGGGCGCCATGGAGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGAGCAGGT CTCCCGCCAGGGCGTGTTTAAGCCATTTGGAGCTGCCTATGGAAATTCAGAAAATGCGTT TACAGATGAATCAGAAGTTAATCTACACCAGAGGCTGGAAAAACTTTACTTATCAACTCG TGCTGCTAAACATTTTCAAAGGGACATTGTCCGGGGTGTGGAGGGATACATAGTCACTGG ATCTAAACAAGTTGACATAGGAAATAAATTGTCCGACGATAGCCAGAAATATGGCACTGG AAACACATGTACAAGTGATAACACTTTATCCAAGGCTGCTATGTACTATGGGAAGGCTCG TTCTCTGATGGAAAAGGAACGTGGGAACATGTTGAGAGCATTTGGTACACAGGTGGCAGA GCCACTGCGAGCAATGGTCATGGGTGCGCCTTTAGAAGATGCGAGACATCTAGCCCAAAG ATATGACCGAATGAGGCAAGAAGCTGAAGCCCAGGCTGTTGAAGTTTCAAGACGGCAAAA CAGAGTAAGAGAGTCAGCTCCGAATGGAGATGTGATAACAAAGCTGGAAGCTGCTGAATA CAAACTTGAAGAACTTAAGTCAAGCATGGTAGGATTAGGGAAGGAAGCTGTTGCAGCAAT GGCTGCCGTTGAGGCTCAGCAACAAAGATTGACATTACAGCGCCTTATTGCGATGGTTGA AGCCGAAAGAGCCTACCATCAGAGAGTTCTGGAGATCCTTGACCACCTGGAACAAGAAAT GGTATCAGAGCGTCAAAAGATTGAAGCACCTCCGACCCCATCAGCAGAAAATTACATGGC ACAGCCACCACCATCTTATGACGAAGTCAATGGCATGTTTGCATCCTCCTCTGTCGATGA TTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGGCCCTTGATTCCTTCAAGGCTGAAAG TGAGTCTGAGCTTAACTTGTCAGCTGGAGACATTGTTATTGTCCGGAAGATATCAACCAA TGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCGA AAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCGAGGATAA ATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCACTT ATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAGACTACACTTCGTGTTATTTACA AGTTTTGAATGGTATAGTTTGTAAGACATTTCGG