Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0539100-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:26981254:26982166:-1 gene:Os04g0539100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os04t0539100-01);Hypothetical conserved gene. (Os04t0539100-02)
Sequence

ATGCAGTTCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTC
TACTTCCTCCGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGAT
GGCGTCTCCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGAC
GGCGAGTGCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAG
AAGGAGTCGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTC
GTCGACATCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAAC
ATGGTGCTCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGC
AGCAGCGAGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTG
GTAATTCTTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGA
ACATTAGATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCT
TCCATCCCCCCGGTGAGAATTTTTTATACATCTCCAATCGTTGTTACCTGTGGCACTGTT
GTTTCTTTGAATTGA

Peptide Sequence

PEP ID

Os04t0539100-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:26981254:26982166:-1 gene:Os04g0539100 transcript:Os04t0539100-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os04t0539100-01);Hypothetical conserved gene. (Os04t0539100-02)
Sequence

MQFPFAAGDYPADQVDPDYLYFLRHIRPDGDSYTLELPSDGVSPPSLVKYEAPADTGSTD
GECVSDPSPGRASTNRPPEEKESSVEVDAEPPAPSWIDSLVDIDEDYRLFLKHTRVVNDN
MVLEIDGAVVTYPCAASSESSSEVEDAREKEVAMDSDEPVVILPDPKVCDWVAVGDASVR
TLDSKKKRKMSSSNSNNAGPSIPPVRIFYTSPIVVTCGTVVSLN

Transcript Sequence

Transcript ID

Os04t0539100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:26981254:26982166:-1 gene:Os04g0539100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os04t0539100-01);Hypothetical conserved gene. (Os04t0539100-02)
Sequence

GCCCTCCAAATTCCCAAGGCGGGCCTCGAGTCGAGCCCAAACCCCTTCGCCGCCCCGCCA
TGCAGTTCCCCTTCGCCGCCGGCGATTACCCCGCCGACCAGGTCGACCCCGACTACCTCT
ACTTCCTCCGCCACATCCGCCCCGATGGCGACTCCTACACCCTCGAGCTCCCCTCCGATG
GCGTCTCCCCTCCTTCCCTCGTGAAGTACGAGGCCCCCGCCGACACCGGCAGCACCGACG
GCGAGTGCGTCTCCGATCCCTCCCCTGGCCGCGCCAGCACCAACCGCCCGCCGGAGGAGA
AGGAGTCGTCGGTGGAGGTGGACGCCGAGCCTCCTGCCCCCTCCTGGATCGACTCCCTCG
TCGACATCGACGAGGACTACCGCCTCTTCCTCAAGCACACGCGCGTGGTGAACGACAACA
TGGTGCTCGAGATTGACGGCGCCGTCGTCACCTACCCGTGCGCCGCGTCCTCCGAGAGCA
GCAGCGAGGTCGAGGATGCGCGGGAGAAAGAGGTGGCCATGGATTCAGACGAGCCGGTGG
TAATTCTTCCGGACCCAAAAGTATGCGACTGGGTGGCGGTGGGTGACGCATCCGTGCGAA
CATTAGATAGTAAGAAGAAGAGGAAGATGAGTTCAAGCAATTCCAATAATGCCGGCCCTT
CCATCCCCCCGGTGAGAATTTTTTATACATCTCCAATCGTTGTTACCTGTGGCACTGTTG
TTTCTTTGAATTGAGCAGCGTATACACGTTTTCAGTCCAGAAATAGTTCTCTGTTTTTCG
CCTAATAGAATATACGCAAAAGAAGATGATAGTAGTCTTCGATATTTCAGTACGATTCAA
CAAAAGGCCTGTTGATGGACATGTATGAATAAGCTGATACTGTATTGTACCAACCAGAAC
ACTATTCTCTAGC