Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0539000-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:26977442:26978662:1 gene:Os04g0539000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ndhM description:Protein of unknown function DUF2485 domain containing protein. (Os04t0539000-01)
Sequence

ATGGCAACCACGGCGTCCCCGTTCCTGTCCCCGGCCAAGCTGTCGCTCGAGCGCCGGCTC
CCGCGCGCGACGTGGACGGCGCGACGAAGCGTCAGGTTCCCGCCGGTGCGAGCCCAAGAT
CAGCAGCAGCAGGTGAAAGAGGAGGAGGAGGAGGCGGCGGTGGAAAACCTGCCGCCGCCG
CCGCAGGAGGAGGAGCAGAGGCGGGAGCGGAAGACGAGGAGGCAGGGGCCGGCGCAGCCG
CTGCCGGTGCAGCCGCTGGCGGAGAGCAAGAACATGAGCCGGGAGTACGGCGGGCAGTGG
CTGAGTTGCACGACGCGGCACATCCGCATCTACGCCGCGTACATCAACCCGGAGACCAAC
GCCTTCGACCAGACGCAGATGGACAAGCTCACCCTCCTCCTCGACCCCACCGACGAGTTC
GTCTGGACCGACGAGACGTGCCAGAAGGTCTACGACGAGTTCCAGGACCTCGTCGATCAC
TACGAGGGCGCGGAGCTGTCAGAGTACACGCTTCGTTTGATCGGATCTGATCTTGAGCAC
TTCATCCGCAAACTGCTATACGATGGGGAGATAAAGTACAACATGATGTCTAGAGTCCTC
AATTTCAGCATGGGCAAACCAAGGATCAAATTCAACAGCAGCCAGATCCCAGATGTAAAA
TAG

Peptide Sequence

PEP ID

Os04t0539000-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:26977442:26978662:1 gene:Os04g0539000 transcript:Os04t0539000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ndhM description:Protein of unknown function DUF2485 domain containing protein. (Os04t0539000-01)
Sequence

MATTASPFLSPAKLSLERRLPRATWTARRSVRFPPVRAQDQQQQVKEEEEEAAVENLPPP
PQEEEQRRERKTRRQGPAQPLPVQPLAESKNMSREYGGQWLSCTTRHIRIYAAYINPETN
AFDQTQMDKLTLLLDPTDEFVWTDETCQKVYDEFQDLVDHYEGAELSEYTLRLIGSDLEH
FIRKLLYDGEIKYNMMSRVLNFSMGKPRIKFNSSQIPDVK

Transcript Sequence

Transcript ID

Os04t0539000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:26977442:26978662:1 gene:Os04g0539000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ndhM description:Protein of unknown function DUF2485 domain containing protein. (Os04t0539000-01)
Sequence

ACAAGCCAAGCCAAAGCCAAGCGAAACAGCTGCGCGCAGCATGGCAACCACGGCGTCCCC
GTTCCTGTCCCCGGCCAAGCTGTCGCTCGAGCGCCGGCTCCCGCGCGCGACGTGGACGGC
GCGACGAAGCGTCAGGTTCCCGCCGGTGCGAGCCCAAGATCAGCAGCAGCAGGTGAAAGA
GGAGGAGGAGGAGGCGGCGGTGGAAAACCTGCCGCCGCCGCCGCAGGAGGAGGAGCAGAG
GCGGGAGCGGAAGACGAGGAGGCAGGGGCCGGCGCAGCCGCTGCCGGTGCAGCCGCTGGC
GGAGAGCAAGAACATGAGCCGGGAGTACGGCGGGCAGTGGCTGAGTTGCACGACGCGGCA
CATCCGCATCTACGCCGCGTACATCAACCCGGAGACCAACGCCTTCGACCAGACGCAGAT
GGACAAGCTCACCCTCCTCCTCGACCCCACCGACGAGTTCGTCTGGACCGACGAGACGTG
CCAGAAGGTCTACGACGAGTTCCAGGACCTCGTCGATCACTACGAGGGCGCGGAGCTGTC
AGAGTACACGCTTCGTTTGATCGGATCTGATCTTGAGCACTTCATCCGCAAACTGCTATA
CGATGGGGAGATAAAGTACAACATGATGTCTAGAGTCCTCAATTTCAGCATGGGCAAACC
AAGGATCAAATTCAACAGCAGCCAGATCCCAGATGTAAAATAGAATGCGTGTTGTACCCT
AAAGAGAAAGCATGTAACTATCAATGATTTTCCCGTTCAAAGATGCCCAATGTATATTTT
GCTCTTCCAGAAGAGCCATGAGCTAGGGTATTTCCGAACTCAAATCGGGTTCATACAAAA
GCAGAACATTCACAGTCGATAATAATTTTGTCGACTCCAACATGGTTACATAAAGAGAAG
CTGAGCAAACTGAGGGTATTACCCTGTCGTGAAGACTAAGGAAGGGTCTAGCACTCTAGT
TTCATGGCATTTCCGTTCTATGGTTTTTGCTGAGTATTAGCGGTGTGAAAATGTCGATAC
TTCAGGTAATCCAATCACATTGAAATAACACCACTGCTTTATTGCTT