Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0538700-02
CDS Infomation	cds chromosome:IRGSP-1.0:4:26954474:26960214:-1 gene:Os04g0538700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUTOPHAGY ASSOCIATED GENE 13B description:Autophagy-related protein 13 domain containing protein. (Os04t0538700-01);Autophagy-related protein 13 domain containing protein. (Os04t0538700-02)
Sequence	ATGTCCAGCATGTCGGACTCGGGGACGGGCGGCCGCGGGGGCGCGGAGCTGATGGTGGAG CAGTTCCACCTCAAGGTGCTCCATGCCGTGCTCGCCGTGCGCGGGCCGCGCCCGCTGCAG CCGGCCGCGTCGGCGTCGTTCAGGCGGCGGGACAGGTGGTTCCACCTCCCGCTCCACGAT CCGCAGCCTCCGCCCGCGGCGGAGGGAGTGGAGGCGCCGGAGGCGGGGGAGCCGCTCGTG GTGGACATCCTCCTGGCTCACGCCGCAGCCGGCGGCGGCGGCGGCGGCGGAGCGGGCGGG GAGGTGGTGGAGAGATGGACGGTGGTGTGCGAGCCCTGGCCGGACGCCGCGGCGGGCGAG GGGATACCCGTGAACCGGGCGTACAAGCGCTGCATGACGATGCTTCGGTCGGTGTACGCC ACGCTCCGCTTCCTGCCGGCGTACCGCGTCTTCCGCCTCCTCTGCGCCAACCAATCCTAC AACTACGAGATGGTCCACCGCGTCGGCTCCTTCGCCGTGCCGCTCTCCCGCGACGAGGAG GCCGCCATGCGCTCCTACCAGTTCGTCCCCGTCGAGACGCAGCACGGCCGCCTCGTCGTC TCTGTCCAGTACCTCCCCAGCCTCGCTGCCTTCAATCTCGAGATCTCCTCCTTGTCGCCC TCCATGCTGATCGCCGACTACGTGGGCAGCCCTGCTGCCGAGCCAATGCGTGCCTTCCCA GCTTCGCTCACAGGAGCCACAGGTTCCGCTTTCCCGCAGGCGCTGTCCAATCAGCCGCAG CGCCCGCACAGCTGGGCGACGCCAGCGCTCTGGCCGCAGGCGCCTAGGCAGCAAGCTAGA TTTTCGCCACCTCATTTGCTCAACGCATCACCCACTCCATCGCCACCCAATTTTCCCAGC GGGTATCTTCAATCTCGTCCTAAGGGAGGGTCTGCACCAATGAGCATACCACAGGTGGGT GACAGGAGGAGCCCAATTCACCGGCCGATCACATTGCCACCAACGTCTCCGAGGAGAGTA GGGGAGACAGGAACATCTAGTGCACAACAGTCTCCATCAGAGAGATGCCCCTCGTTTGGG AGGGCAGATGGATTTCGAATAATGGATCCCTATGCAAGCTTGTCGCCAGGACGCAAGGGC AAGGACACTAAGGACGAATCTGGCAGGTTCTCTGCACTCTCCTCCTGTGATTCCCCTCGA CAAGATGATATAGATGATGCAGATTATCCCTTTGCTGTGGATGATGTTGATACACCGAGC TCCCAGCCTGGGAGCAGTGATGGGAAGGAAGCTAGAGATCAGGCAAGTTCGTCGTCCCAT AAATCACAAGATGCCGCAGTTGGCTCTCTGGTGCACCTGCTCAAAACTGCACGCCCTCTG CGAAACTCTAATTGTCCATCTCAAGCATCAGCGGTTGAATCTAGTGAAGCAGCCTCAACC AGTTCTGTCGTGTCCCGTAGGAAATCTGATGCACTCGAAGAGCTCCAATCATTTAAAGAA ATCAAGGAGAGGTTGATGTCCCGGAGTAGAGCAAAACAGCAAGAGCCACCAGAAAAACCA TAG

Peptide Sequence

PEP ID	Os04t0538700-02
PEP Infomation	pep chromosome:IRGSP-1.0:4:26954474:26960214:-1 gene:Os04g0538700 transcript:Os04t0538700-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUTOPHAGY ASSOCIATED GENE 13B description:Autophagy-related protein 13 domain containing protein. (Os04t0538700-01);Autophagy-related protein 13 domain containing protein. (Os04t0538700-02)
Sequence	MSSMSDSGTGGRGGAELMVEQFHLKVLHAVLAVRGPRPLQPAASASFRRRDRWFHLPLHD PQPPPAAEGVEAPEAGEPLVVDILLAHAAAGGGGGGGAGGEVVERWTVVCEPWPDAAAGE GIPVNRAYKRCMTMLRSVYATLRFLPAYRVFRLLCANQSYNYEMVHRVGSFAVPLSRDEE AAMRSYQFVPVETQHGRLVVSVQYLPSLAAFNLEISSLSPSMLIADYVGSPAAEPMRAFP ASLTGATGSAFPQALSNQPQRPHSWATPALWPQAPRQQARFSPPHLLNASPTPSPPNFPS GYLQSRPKGGSAPMSIPQVGDRRSPIHRPITLPPTSPRRVGETGTSSAQQSPSERCPSFG RADGFRIMDPYASLSPGRKGKDTKDESGRFSALSSCDSPRQDDIDDADYPFAVDDVDTPS SQPGSSDGKEARDQASSSSHKSQDAAVGSLVHLLKTARPLRNSNCPSQASAVESSEAAST SSVVSRRKSDALEELQSFKEIKERLMSRSRAKQQEPPEKP

Transcript Sequence

Transcript ID	Os04t0538700-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:26954474:26960214:-1 gene:Os04g0538700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUTOPHAGY ASSOCIATED GENE 13B description:Autophagy-related protein 13 domain containing protein. (Os04t0538700-01);Autophagy-related protein 13 domain containing protein. (Os04t0538700-02)
Sequence	GAACTCCAACCTCTTCCTCTCCTCTTCTTCCCTCCCATCGACGCGCAGATCTATCCCCCG TCGCCGTGCGCTTCCCTCCGATCGCGAGCAGATCGGATTTATGCGGCCGTACTGCTTCTG CTGCTGCTGCTGCGAGGAGCGCCAGCCATGTCGTGGAGCTTGAGCCGTGGTGAGGGGGAG GAGGCGGGCGGCGGCGGCGGCGGCGCTGGGGTCGGGGTTCGGCGGTCGCAATGTCCAGCA TGTCGGACTCGGGGACGGGCGGCCGCGGGGGCGCGGAGCTGATGGTGGAGCAGTTCCACC TCAAGGTGCTCCATGCCGTGCTCGCCGTGCGCGGGCCGCGCCCGCTGCAGCCGGCCGCGT CGGCGTCGTTCAGGCGGCGGGACAGGTGGTTCCACCTCCCGCTCCACGATCCGCAGCCTC CGCCCGCGGCGGAGGGAGTGGAGGCGCCGGAGGCGGGGGAGCCGCTCGTGGTGGACATCC TCCTGGCTCACGCCGCAGCCGGCGGCGGCGGCGGCGGCGGAGCGGGCGGGGAGGTGGTGG AGAGATGGACGGTGGTGTGCGAGCCCTGGCCGGACGCCGCGGCGGGCGAGGGGATACCCG TGAACCGGGCGTACAAGCGCTGCATGACGATGCTTCGGTCGGTGTACGCCACGCTCCGCT TCCTGCCGGCGTACCGCGTCTTCCGCCTCCTCTGCGCCAACCAATCCTACAACTACGAGA TGGTCCACCGCGTCGGCTCCTTCGCCGTGCCGCTCTCCCGCGACGAGGAGGCCGCCATGC GCTCCTACCAGTTCGTCCCCGTCGAGACGCAGCACGGCCGCCTCGTCGTCTCTGTCCAGT ACCTCCCCAGCCTCGCTGCCTTCAATCTCGAGATCTCCTCCTTGTCGCCCTCCATGCTGA TCGCCGACTACGTGGGCAGCCCTGCTGCCGAGCCAATGCGTGCCTTCCCAGCTTCGCTCA CAGGAGCCACAGGTTCCGCTTTCCCGCAGGCGCTGTCCAATCAGCCGCAGCGCCCGCACA GCTGGGCGACGCCAGCGCTCTGGCCGCAGGCGCCTAGGCAGCAAGCTAGATTTTCGCCAC CTCATTTGCTCAACGCATCACCCACTCCATCGCCACCCAATTTTCCCAGCGGGTATCTTC AATCTCGTCCTAAGGGAGGGTCTGCACCAATGAGCATACCACAGGTGGGTGACAGGAGGA GCCCAATTCACCGGCCGATCACATTGCCACCAACGTCTCCGAGGAGAGTAGGGGAGACAG GAACATCTAGTGCACAACAGTCTCCATCAGAGAGATGCCCCTCGTTTGGGAGGGCAGATG GATTTCGAATAATGGATCCCTATGCAAGCTTGTCGCCAGGACGCAAGGGCAAGGACACTA AGGACGAATCTGGCAGGTTCTCTGCACTCTCCTCCTGTGATTCCCCTCGACAAGATGATA TAGATGATGCAGATTATCCCTTTGCTGTGGATGATGTTGATACACCGAGCTCCCAGCCTG GGAGCAGTGATGGGAAGGAAGCTAGAGATCAGGCAAGTTCGTCGTCCCATAAATCACAAG ATGCCGCAGTTGGCTCTCTGGTGCACCTGCTCAAAACTGCACGCCCTCTGCGAAACTCTA ATTGTCCATCTCAAGCATCAGCGGTTGAATCTAGTGAAGCAGCCTCAACCAGTTCTGTCG TGTCCCGTAGGAAATCTGATGCACTCGAAGAGCTCCAATCATTTAAAGAAATCAAGGAGA GGTTGATGTCCCGGAGTAGAGCAAAACAGCAAGAGCCACCAGAAAAACCATAGCACCGTT CTTTCCTTCGTAAACTTCACAGGTGAAGATCCCCTACCACAAAGCGGGCTATGCGGTGAG CTCAGTGACGTTATGCTAAGGAATTCGTGTGTATATAACTGATGGACTGATGCTTTTAGT TAAAGAGAAGATACGAGTTACCACTGATTTCTGCGAGAATCCCTCGCCATTCTTGAACTC TAGAAGAATTACGCCACTGTTTATACGCTTTTATACGTAGGTGGGAGCCTCTTGACGAAT ATAGCAGCTCCAGCGTGTGCGTGTGTAATTATGTGACTGTACTGACTACTGTGCCGAGTG TTCGGTAAATTAAAGTATCTATCTTCAAACTTC