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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0535400-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:26754463:26757287:-1 gene:Os04g0535400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Histidine triad motif domain containing protein. (Os04t0535400-01)
Sequence

ATGAAGAAGCTGTTCTGCTTCCGCGGCGGCACCGTGGCGAGGAGGTCGGAGAGGGCCCCG
ATGGCTGAATGGTGCGTGTTCTGCCCCATCGCCCGCCGCGACCCCGCTTGCAACACCGTC
CTCCTCTACTCCGATGACAGGGTCATGGCGTTCAAGGACATCAACCCGTCGGCTTTCAGG
CACTATCTTGTCATACCCATTGAACATATACCTACTGTCAATAATCTCCAAAGAACCACC
GAAGATCACCAGTTAGTTAGTCACATGTTGGCAGTAGGAAGAGATTTACTCAATCGGGAT
GCTCCCAATTCGGAGGAACAGAGATTTGGTTTTCACCAGCCACCATTTAATAGTGTTGAT
CACCTTCATCTTCACTGCTTGGCATTGCCATTTACGCCCAGCTGGAGGCAAGTAAAATAT
ACACCTCTTGGTCCCCTTGGAGGGTTTATTGAAGCTGAGAGTCTATTGGAAAGAATACGC
CCATAG

Peptide Sequence

PEP ID

Os04t0535400-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:26754463:26757287:-1 gene:Os04g0535400 transcript:Os04t0535400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Histidine triad motif domain containing protein. (Os04t0535400-01)
Sequence

MKKLFCFRGGTVARRSERAPMAEWCVFCPIARRDPACNTVLLYSDDRVMAFKDINPSAFR
HYLVIPIEHIPTVNNLQRTTEDHQLVSHMLAVGRDLLNRDAPNSEEQRFGFHQPPFNSVD
HLHLHCLALPFTPSWRQVKYTPLGPLGGFIEAESLLERIRP

Transcript Sequence

Transcript ID

Os04t0535400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:26754463:26757287:-1 gene:Os04g0535400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Histidine triad motif domain containing protein. (Os04t0535400-01)
Sequence

ACTGGACGATTAGCCAGTGCGCCACCGGCCACCGGATCGATACCGGCGGCGGCGGCGGTG
GCGGTATCCCACCCGCGAGCACGAGCACGAGCACGGCTGCCGCGTCCGGGGCGCAAGTGC
GGAAACAGTCCAAGTCCACGCCGCGTTGGGGATCCCACCTAACCTCAACCGCTCCACGCG
GGCGCCGAGGGTGCCATGAAGAAGCTGTTCTGCTTCCGCGGCGGCACCGTGGCGAGGAGG
TCGGAGAGGGCCCCGATGGCTGAATGGTGCGTGTTCTGCCCCATCGCCCGCCGCGACCCC
GCTTGCAACACCGTCCTCCTCTACTCCGATGACAGGGTCATGGCGTTCAAGGACATCAAC
CCGTCGGCTTTCAGGCACTATCTTGTCATACCCATTGAACATATACCTACTGTCAATAAT
CTCCAAAGAACCACCGAAGATCACCAGTTAGTTAGTCACATGTTGGCAGTAGGAAGAGAT
TTACTCAATCGGGATGCTCCCAATTCGGAGGAACAGAGATTTGGTTTTCACCAGCCACCA
TTTAATAGTGTTGATCACCTTCATCTTCACTGCTTGGCATTGCCATTTACGCCCAGCTGG
AGGCAAGTAAAATATACACCTCTTGGTCCCCTTGGAGGGTTTATTGAAGCTGAGAGTCTA
TTGGAAAGAATACGCCCATAGTCTACCGTTATCACAACTACCGGTACAAGCTATTCTTGC
TTAACTTTTGTTGTATTGTCATTTGTACGTGATTCATTGTACATTCACAACACATGGTCT
GAAATTGTAGACTAAATCAGACCCACTCTTTCTGGATGTTGAGCTGCATTGAGTTGATAA
ATGCCTGCTGTATGAATTTCTTTTCATGGTGGACAGCCTTAGCTTACAAACAAAGGAATA
ATAACCACCTATGGACCTTTTATGGCC