Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0532500-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:26621017:26622583:-1 gene:Os04g0532500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PLIM2B description:Similar to Transcription factor L2. (Os04t0532500-01)
Sequence

ATGTCTTTCACCGGCACGCAGGACAAGTGCACGGCGTGCGACAAGACCGTCCACTTCATC
GACCTCCTCACCGCCGACGGCGTCCCGTACCACAAGACCTGCTTCAAGTGCAGCCACTGC
AAAGGGATTCTCTCGATGTGCAGCTACTCGTCCATGGACGGCGTCCTCTACTGCAAGACC
CACTTTGAGCAGCTCTTCAAGGAGACGGGGAGCTTCTCCAAGAAGTTCGCGCCAGGTTGC
AGATCTACAGACAAGGAACTGGCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTCTGGA
ACTCAGGATAAGTGTGCAGCCTGCCAGAAAACAGTGTACCCACTAGAAAAGCTAACTTTG
GAAGGTGAGTCATACCACAAGAGCTGCTTCAAGTGCTCTCATGGAGGCTGCATCCTGACC
ACCTCCTCCTACGCGGCGCTCAACGGGGTGTTGTACTGCAAGATACACTTCGGGCAGCTG
TTCATGGAGAAAGGGAGCTACAATCACATGAAGAAGAAGAGCGAGTCCCAGGAGGTGTTG
CCGGAAGTGGTGCCCGAAGAGCAACCGGCGCCGCCGCCGCCAGACGAAAATAGAGAGGAC
AACTAG

Peptide Sequence

PEP ID

Os04t0532500-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:26621017:26622583:-1 gene:Os04g0532500 transcript:Os04t0532500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PLIM2B description:Similar to Transcription factor L2. (Os04t0532500-01)
Sequence

MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT
HFEQLFKETGSFSKKFAPGCRSTDKELARAPSKICSAFSGTQDKCAACQKTVYPLEKLTL
EGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMKKKSESQEVL
PEVVPEEQPAPPPPDENREDN

Transcript Sequence

Transcript ID

Os04t0532500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:26621017:26622583:-1 gene:Os04g0532500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PLIM2B description:Similar to Transcription factor L2. (Os04t0532500-01)
Sequence

GAGGGAACAGCGAGGGGGCGGGCGTGCGTGCGTCGTCGATCGTCGACAGTCGTCTCTTGC
CACCATGTCTTTCACCGGCACGCAGGACAAGTGCACGGCGTGCGACAAGACCGTCCACTT
CATCGACCTCCTCACCGCCGACGGCGTCCCGTACCACAAGACCTGCTTCAAGTGCAGCCA
CTGCAAAGGGATTCTCTCGATGTGCAGCTACTCGTCCATGGACGGCGTCCTCTACTGCAA
GACCCACTTTGAGCAGCTCTTCAAGGAGACGGGGAGCTTCTCCAAGAAGTTCGCGCCAGG
TTGCAGATCTACAGACAAGGAACTGGCAAGGGCCCCAAGCAAGATATGTTCAGCGTTTTC
TGGAACTCAGGATAAGTGTGCAGCCTGCCAGAAAACAGTGTACCCACTAGAAAAGCTAAC
TTTGGAAGGTGAGTCATACCACAAGAGCTGCTTCAAGTGCTCTCATGGAGGCTGCATCCT
GACCACCTCCTCCTACGCGGCGCTCAACGGGGTGTTGTACTGCAAGATACACTTCGGGCA
GCTGTTCATGGAGAAAGGGAGCTACAATCACATGAAGAAGAAGAGCGAGTCCCAGGAGGT
GTTGCCGGAAGTGGTGCCCGAAGAGCAACCGGCGCCGCCGCCGCCAGACGAAAATAGAGA
GGACAACTAGGACTACGAAACGAGCCAAACACATACGGTGATACACGGATCTCTGGAGTT
TCTGTTTACTAATTTTGCAACGGTTGTTTATTCCCTCCTCTTTTTTTGCTCGTGATCCTC
CCTGTGTGCGAGTAGTCTGTCAAGCTGTAAGTGTACGCCTTCGTTTCATAGGAGGCTCAT
GAAAATGGCAGGTTGACAACAATGGCATGCGACTGACTGCCAGCCTCCTGTGAAAAATCT
GTAATTTCTGTAACTACTACGAATTGATCATACTTCCTAGCAACCTTATCCTTCT