Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0531300-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:26565601:26571685:1 gene:Os04g0531300 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA-dihydrouridine synthase domain containing protein. (Os04t0531300-01);tRNA-dihydrouridine synthase domain containing protein. (Os04t0531300-02)
Sequence

ATGGAGTACCGCGACAAGCTGGTGCTCGCGCCCATGGTTCGCGTGGGTACCCTGCCGTTT
AGGCTACTGGCTGCTGAATATGGTGCTGATATCACTTACGGAGAAGAAATAATAGATCAT
AAGTTTTTGAAGTGTGAACGTGTTACAAATGAATCTCTTGGTACTACTGATTTTTTGGAG
AGAGGGACTGATACTGTAGTATTCCGTACTTGCCCACAAGAAAGGGATAGGGTTGTATTC
CAAATGGGAACATCTGATGCTGTGAGGGCACTGAAAGCTGCTCAGCTTGTGTGTAACGAT
GTTGCTGCTATAGATATCAACATGGGTTGTCCCAAATCTTTCTCTCTTAGTGGTGGAATG
GGAGCCGCATTACTCTCCAAACCTGAGCTTATTCATGATATTTTGACCACATTGCGGAGG
AACTTGGACACTACCGTGACATGTAAAATCCGTCTTCTGAACACACGCCAGGACACTGTG
GAGTTGGCTCGCCGAGTTGAGAAGATTGGTGTTCCAGCCCTTGCTGTCCATGGAAGAAAG
GTCAAAGACAGACCAAGAGATCCTGCTAAGTGGGATGAGATTGCAGATGTTGTGTCTGCA
CTGTCAATTCCAGTTATAGCTAATGGAGATGTATTTGAATATGAGGATTTTAAAAGAATT
AAAGATGCTACAGGTGCCGCTTCTGTAATGGTTGCCAGAGGTGCCATGTGGAATGCCTCA
ATTTTTTGTCCCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTACGTGAGAAAG
AGTATTTTGTGGGACAATGATTTGAAGAGCACAAAACAAACCATAAAAGAAATGATAATG
CACTATTCTTGCCTTGAATTCCCTGAAGGAAAAGGTGTGAACAAGTGTGATACAATAGCT
GATTTAGCGAAACTATATGGGGAAGAGTACTACAATTTCGTTCTTTCAAATAGGAATTGA

Peptide Sequence

PEP ID

Os04t0531300-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:26565601:26571685:1 gene:Os04g0531300 transcript:Os04t0531300-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA-dihydrouridine synthase domain containing protein. (Os04t0531300-01);tRNA-dihydrouridine synthase domain containing protein. (Os04t0531300-02)
Sequence

MEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFLE
RGTDTVVFRTCPQERDRVVFQMGTSDAVRALKAAQLVCNDVAAIDINMGCPKSFSLSGGM
GAALLSKPELIHDILTTLRRNLDTTVTCKIRLLNTRQDTVELARRVEKIGVPALAVHGRK
VKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGAASVMVARGAMWNAS
IFCPKGKTPWEDVKREYVRKSILWDNDLKSTKQTIKEMIMHYSCLEFPEGKGVNKCDTIA
DLAKLYGEEYYNFVLSNRN

Transcript Sequence

Transcript ID

Os04t0531300-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:26565601:26571685:1 gene:Os04g0531300 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA-dihydrouridine synthase domain containing protein. (Os04t0531300-01);tRNA-dihydrouridine synthase domain containing protein. (Os04t0531300-02)
Sequence

GCGGAGTCCTCTCCAAACTTCGCGGGGAAAAAAATTCGGAGCCGCCGAGCGGCGGCGGCG
CGGCGGGGATGGAGTACCGCGACAAGCTGGTGCTCGCGCCCATGGTTCGCGTGGGTACCC
TGCCGTTTAGGCTACTGGCTGCTGAATATGGTGCTGATATCACTTACGGAGAAGAAATAA
TAGATCATAAGTTTTTGAAGTGTGAACGTGTTACAAATGAATCTCTTGGTACTACTGATT
TTTTGGAGAGAGGGACTGATACTGTAGTATTCCGTACTTGCCCACAAGAAAGGGATAGGG
TTGTATTCCAAATGGGAACATCTGATGCTGTGAGGGCACTGAAAGCTGCTCAGCTTGTGT
GTAACGATGTTGCTGCTATAGATATCAACATGGGTTGTCCCAAATCTTTCTCTCTTAGTG
GTGGAATGGGAGCCGCATTACTCTCCAAACCTGAGCTTATTCATGATATTTTGACCACAT
TGCGGAGGAACTTGGACACTACCGTGACATGTAAAATCCGTCTTCTGAACACACGCCAGG
ACACTGTGGAGTTGGCTCGCCGAGTTGAGAAGATTGGTGTTCCAGCCCTTGCTGTCCATG
GAAGAAAGGTCAAAGACAGACCAAGAGATCCTGCTAAGTGGGATGAGATTGCAGATGTTG
TGTCTGCACTGTCAATTCCAGTTATAGCTAATGGAGATGTATTTGAATATGAGGATTTTA
AAAGAATTAAAGATGCTACAGGTGCCGCTTCTGTAATGGTTGCCAGAGGTGCCATGTGGA
ATGCCTCAATTTTTTGTCCCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTACG
TGAGAAAGAGTATTTTGTGGGACAATGATTTGAAGAGCACAAAACAAACCATAAAAGAAA
TGATAATGCACTATTCTTGCCTTGAATTCCCTGAAGGAAAAGGTGTGAACAAGTGTGATA
CAATAGCTGATTTAGCGAAACTATATGGGGAAGAGTACTACAATTTCGTTCTTTCAAATA
GGAATTGAACACCTTGATTTTTTCTAACATCCATGTTACACAGCCCCTGCCTGGAATCCA
TACCAGTTTTATGAATTGGTTTGGAAGGATCTACCATATTACGAAACAAATACTTTGCAG
TTTTGACTGAACTTGTACTTTGTGATCTATAATGACCAAGTTATTGTTATCGTTGGGTCT
GGAGCGCCCTACATTTTTGGGAAGTTGTTATGACAGATGTTGTTGATGATAATATTCTGT
TTGGTTGTTGGACATCACCTATGGGTGGGGCTTCAGTCTCGATCTCTCAGGTTCTTAAAT
CGGGGTTCTGGAAGCACCAAGTGTCCAAGTCTGCATCACCGTTGACATCAGAAATTAAAG
CCGATTCACACGGGTAATTCTTTTGGGTTAGCTTATTATATCACCATATCTAAGACAATT
GCTGCAGTAGACAAATTATGGCGTGGTTGTCATCTTGTACACTTCCAGAAATTCAGTTTC
TTGCAATAAGTAAGGTTATTAAAGGTCAAATG