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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0531100-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:26558962:26561236:1 gene:Os04g0531100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHLOEM PROTEIN 16 description:Small C2-domain protein consisting of a single C2 domain, Phloem protein, Signaling pathway involving Ca<sup>2+</sup> ions, Defense response (Os04t0531100-01)
Sequence

ATGGTGCAGGGGACGCTCGAGGTGCTGCTCGTCGGAGCCAAGGGCCTCGAGAACACCGAC
TACCTGTGCAACATGGACCCGTACGCGGTTCTCAAATGCCGCTCGCAGGAGCAGAAGAGC
AGCGTTGCGTCAGGTAAAGGATCTGACCCTGAATGGAACGAAACCTTTATGTTCAGCGTC
ACTCACAACGCTACAGAGCTCATCATCAAGTTGATGGACAGTGACAGTGGCACGGATGAT
GATTTTGTTGGAGAAGCAACGATTTCTTTGGAAGCAATCTATACAGAAGGAAGCATACCC
CCAACTGTTTATAATGTTGTGAAAGAAGAAGAATACCGTGGAGAAATCAAAGTGGGCCTG
ACGTTCACTCCAGAGGATGATCGCGATCGGGGTTTATCTGAGGAAGACATTGGTGGATGG
AAGCAGTCATCTTGA

Peptide Sequence

PEP ID

Os04t0531100-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:26558962:26561236:1 gene:Os04g0531100 transcript:Os04t0531100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHLOEM PROTEIN 16 description:Small C2-domain protein consisting of a single C2 domain, Phloem protein, Signaling pathway involving Ca<sup>2+</sup> ions, Defense response (Os04t0531100-01)
Sequence

MVQGTLEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSDPEWNETFMFSV
THNATELIIKLMDSDSGTDDDFVGEATISLEAIYTEGSIPPTVYNVVKEEEYRGEIKVGL
TFTPEDDRDRGLSEEDIGGWKQSS

Transcript Sequence

Transcript ID

Os04t0531100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:26558962:26561236:1 gene:Os04g0531100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHLOEM PROTEIN 16 description:Small C2-domain protein consisting of a single C2 domain, Phloem protein, Signaling pathway involving Ca<sup>2+</sup> ions, Defense response (Os04t0531100-01)
Sequence

GTCTCGCTTCCTGGTCAAATTGTTCGCTAATAAGCATCGATCGAAGGCGAGGCCAGCCAG
CCAGCCGGGGCGCCGGGGGAGCTGGGGAAGATGGTGCAGGGGACGCTCGAGGTGCTGCTC
GTCGGAGCCAAGGGCCTCGAGAACACCGACTACCTGTGCAACATGGACCCGTACGCGGTT
CTCAAATGCCGCTCGCAGGAGCAGAAGAGCAGCGTTGCGTCAGGTAAAGGATCTGACCCT
GAATGGAACGAAACCTTTATGTTCAGCGTCACTCACAACGCTACAGAGCTCATCATCAAG
TTGATGGACAGTGACAGTGGCACGGATGATGATTTTGTTGGAGAAGCAACGATTTCTTTG
GAAGCAATCTATACAGAAGGAAGCATACCCCCAACTGTTTATAATGTTGTGAAAGAAGAA
GAATACCGTGGAGAAATCAAAGTGGGCCTGACGTTCACTCCAGAGGATGATCGCGATCGG
GGTTTATCTGAGGAAGACATTGGTGGATGGAAGCAGTCATCTTGAGGAAGAAGCAGATAC
TTTGATGTCGCACTGCATCGCTATGGTAAGTCGTGTGCTGGAAGCCTGGAACAAAGCCTA
TTGAAAAGAGCAGTCTTGTAGAAATACTTCTCATGATTTTCTAAAAGTTGTAATAATAGT
GTTCGCCAATATGCTCTATATGTAAGGACCTTGCTTTGATGCCCACTAAACTGTAATAAC
TATGGCAAGTTATGATGCAACAGAAGTGCTATAATCCTTT