Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0530700-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:26543241:26546917:-1 gene:Os04g0530700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta-D-xylosidase. (Os04t0530700-01)
Sequence	ATGTCCAACGTCCCCTTGCTCCTCCTCCTTGTCGTCGCTAGCGCCGGCGCGGGCGATGGA GCCGCGCCGGCGTCGAATGCGCGCCCGTGCGCCTCGCCGGCGGCCAGCGCCTACCCCTTC TGCAACGCCACCCTCCCGTTCCCTGCCCGCGCGCGCGCCCTCGTCTCCCTCCTCACCCTC GACGAGAAGATAGCGCAGCTCTCCAACACCGCCGCGGGCGCCCCCCGCCTCGGCGTCCCG CCCTTCGAGTGGTGGTCGGAGTCCCTCCACGGCGTCTGCGACAACGGGCCCGGGGTCAAC TTCTCCTCGGGCCCCGTCCGCTCCGCGACCATCTTCCCCCAGGTCATCCTCTCCGCCGCC GCGTTCAACCGCTCGCTGTGGCGCGCGGCGGCGCGGGCCATCGCGGTGGAGGCGCGCGCC ATGCACAACGCCGGCCAGGCCGGGCTCACGTTCTGGGCGCCCAACATCAACGTCTTCCGC GACCCACGGTGGGGCCGCGGCCAGGAGACGCCGGGAGAGGACCCCGCCGTCGTCTCCGCC TACTCCGTCGAGTATGTGAAAGGGTTCCAGCGGGACTACGGAGAGGAAGGCAGGATGATG CTCTCCGCCTGCTGCAAGCACTACATCGCTTATGATTTGGAGAAATGGAGGGGCTTTACA AGATACACCTTCAATGCCAAGGTTAATGCGCAAGATATGGAAGACACATACCAGCCTCCT TTCAAGAGCTGCATCCAGGAAGGTCGTGCAAGTTGCTTGATGTGTTCATACAACCAGGTA AATGGTGTGCCAGCATGTGCCCGCAAAGATATCCTGCAAAGGGCTAGAGATGAATGGGGT TTCCAGGGGTATATTACATCTGATTGTGATGCTGTGGCAATAATTCACGAAAACCAGACA TACACAGCATCAGATGAAGATTCAATTGCCGTTGTTCTTAAGGCAGGAATGGATATCAAC TGTGGTTCTTTCCTAATTCGTCATACAAAGTCGGCAATTGAGAAGGGAAAGGTCCAAGAA GAAGATATCAACCATGCCCTTTTTAATCTATTCTCTGTTCAGCTCCGTCTTGGTTTTTTT GATAAGACCAATGAGAATCAGTGGTTTACACAATTAGGACCCAACAATGTGTGCACTACA GAGCATAGGGAACTTGCAGCAGAAGCTGTAAGGCAGGGTACTGTCCTTTTGAAAAATGAT AACGGTTTTTTGCCTCTAAAGAGAAGTGAAGTTGGTCATATTGCTCTTATTGGACCAGCT GCAAATGATCCATATATATTAGGCGGTGACTACACAGGTGTCCCTTGTCATTCTACCACC TTTGTTAAAGGCATGCAAGCATATGTTCCCAAAACAACCTTTGCTGCTGGATGTAAGGAT GTTCCATGTAACTCAACGGATGGATTTGGTGAAGCGATTGAAGCAGCTAAGAGAGCTGAT GTTGTTGTTCTAATTGCTGGGTTGAACCTGACTGAAGAAACGGAAGATCATGATAGAGTG AGCCTTCTCCTTCCAGGCAGGCAGATGGATCTCATACATACTGTTGCCAGTGTAACAAAG AAACCCGTTGTGTTGGTACTCATGGGTGGTGGTCCTGTTGATGTTTCATTTGCAAAGCAT GATCCACGTATTGCGAGCATTCTTTGGATTGGTTATCCTGGCGAGGTTGGTGGAAATGTT CTTCCAGAAATCCTTTTCGGGAAATACAACCCAGGAGGAAAGCTGCCCATAACTTGGTAC CCTGAATCCTTCACTGCTGTTCCGATGGATGATATGAACATGAGAGCTGATGCGTCACGT GGTTACCCAGGAAGAACATACAGATTTTACACTGGAGATGTAGTATATGGGTTTGGGTAT GGTTTGAGCTACTCAAAATATTCGTACAGCATCTTGCAGGCCCCAAAGAAAATCAGCTTG TCCCGTTCGTCAGTTCCAGATCTTATCAGCAGAAAGCCTGCATACACAAGGAGGGATGGA GTAGATTATGTCCAAGTTGAAGACATTGCCTCATGCGAGGCGCTGCAATTTCCTGTTCAC ATCTCGGTTTCCAACGATGGTGCCATGGACGGGAGCCATGCCGTTCTATTGTTCGCGAGT TCGAAACCAAGCTTTCCAGGATCCCCTATAAAACAGCTAGTTGGCTTTGAGCGTGTGCAC ACTGCCGCTGGCAGATCAACCGATGTGGAGATCACCGTCGACCCCTGCAAGCTTATGAGC TTTGCCAACACCGAAGGCACAAGGGTGCTGTTCCTGGGAACACATGTTCTGATGGTGGGA GACGAAGAGCACGAGTTGCTCATCGAGGCATGA

Peptide Sequence

PEP ID	Os04t0530700-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:26543241:26546917:-1 gene:Os04g0530700 transcript:Os04t0530700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta-D-xylosidase. (Os04t0530700-01)
Sequence	MSNVPLLLLLVVASAGAGDGAAPASNARPCASPAASAYPFCNATLPFPARARALVSLLTL DEKIAQLSNTAAGAPRLGVPPFEWWSESLHGVCDNGPGVNFSSGPVRSATIFPQVILSAA AFNRSLWRAAARAIAVEARAMHNAGQAGLTFWAPNINVFRDPRWGRGQETPGEDPAVVSA YSVEYVKGFQRDYGEEGRMMLSACCKHYIAYDLEKWRGFTRYTFNAKVNAQDMEDTYQPP FKSCIQEGRASCLMCSYNQVNGVPACARKDILQRARDEWGFQGYITSDCDAVAIIHENQT YTASDEDSIAVVLKAGMDINCGSFLIRHTKSAIEKGKVQEEDINHALFNLFSVQLRLGFF DKTNENQWFTQLGPNNVCTTEHRELAAEAVRQGTVLLKNDNGFLPLKRSEVGHIALIGPA ANDPYILGGDYTGVPCHSTTFVKGMQAYVPKTTFAAGCKDVPCNSTDGFGEAIEAAKRAD VVVLIAGLNLTEETEDHDRVSLLLPGRQMDLIHTVASVTKKPVVLVLMGGGPVDVSFAKH DPRIASILWIGYPGEVGGNVLPEILFGKYNPGGKLPITWYPESFTAVPMDDMNMRADASR GYPGRTYRFYTGDVVYGFGYGLSYSKYSYSILQAPKKISLSRSSVPDLISRKPAYTRRDG VDYVQVEDIASCEALQFPVHISVSNDGAMDGSHAVLLFASSKPSFPGSPIKQLVGFERVH TAAGRSTDVEITVDPCKLMSFANTEGTRVLFLGTHVLMVGDEEHELLIEA

Transcript Sequence

Transcript ID	Os04t0530700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:26543241:26546917:-1 gene:Os04g0530700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta-D-xylosidase. (Os04t0530700-01)
Sequence	AGTGTGCTCAGCCAAATTCGGCCCCAAACCCGCCATGTCCAACGTCCCCTTGCTCCTCCT CCTTGTCGTCGCTAGCGCCGGCGCGGGCGATGGAGCCGCGCCGGCGTCGAATGCGCGCCC GTGCGCCTCGCCGGCGGCCAGCGCCTACCCCTTCTGCAACGCCACCCTCCCGTTCCCTGC CCGCGCGCGCGCCCTCGTCTCCCTCCTCACCCTCGACGAGAAGATAGCGCAGCTCTCCAA CACCGCCGCGGGCGCCCCCCGCCTCGGCGTCCCGCCCTTCGAGTGGTGGTCGGAGTCCCT CCACGGCGTCTGCGACAACGGGCCCGGGGTCAACTTCTCCTCGGGCCCCGTCCGCTCCGC GACCATCTTCCCCCAGGTCATCCTCTCCGCCGCCGCGTTCAACCGCTCGCTGTGGCGCGC GGCGGCGCGGGCCATCGCGGTGGAGGCGCGCGCCATGCACAACGCCGGCCAGGCCGGGCT CACGTTCTGGGCGCCCAACATCAACGTCTTCCGCGACCCACGGTGGGGCCGCGGCCAGGA GACGCCGGGAGAGGACCCCGCCGTCGTCTCCGCCTACTCCGTCGAGTATGTGAAAGGGTT CCAGCGGGACTACGGAGAGGAAGGCAGGATGATGCTCTCCGCCTGCTGCAAGCACTACAT CGCTTATGATTTGGAGAAATGGAGGGGCTTTACAAGATACACCTTCAATGCCAAGGTTAA TGCGCAAGATATGGAAGACACATACCAGCCTCCTTTCAAGAGCTGCATCCAGGAAGGTCG TGCAAGTTGCTTGATGTGTTCATACAACCAGGTAAATGGTGTGCCAGCATGTGCCCGCAA AGATATCCTGCAAAGGGCTAGAGATGAATGGGGTTTCCAGGGGTATATTACATCTGATTG TGATGCTGTGGCAATAATTCACGAAAACCAGACATACACAGCATCAGATGAAGATTCAAT TGCCGTTGTTCTTAAGGCAGGAATGGATATCAACTGTGGTTCTTTCCTAATTCGTCATAC AAAGTCGGCAATTGAGAAGGGAAAGGTCCAAGAAGAAGATATCAACCATGCCCTTTTTAA TCTATTCTCTGTTCAGCTCCGTCTTGGTTTTTTTGATAAGACCAATGAGAATCAGTGGTT TACACAATTAGGACCCAACAATGTGTGCACTACAGAGCATAGGGAACTTGCAGCAGAAGC TGTAAGGCAGGGTACTGTCCTTTTGAAAAATGATAACGGTTTTTTGCCTCTAAAGAGAAG TGAAGTTGGTCATATTGCTCTTATTGGACCAGCTGCAAATGATCCATATATATTAGGCGG TGACTACACAGGTGTCCCTTGTCATTCTACCACCTTTGTTAAAGGCATGCAAGCATATGT TCCCAAAACAACCTTTGCTGCTGGATGTAAGGATGTTCCATGTAACTCAACGGATGGATT TGGTGAAGCGATTGAAGCAGCTAAGAGAGCTGATGTTGTTGTTCTAATTGCTGGGTTGAA CCTGACTGAAGAAACGGAAGATCATGATAGAGTGAGCCTTCTCCTTCCAGGCAGGCAGAT GGATCTCATACATACTGTTGCCAGTGTAACAAAGAAACCCGTTGTGTTGGTACTCATGGG TGGTGGTCCTGTTGATGTTTCATTTGCAAAGCATGATCCACGTATTGCGAGCATTCTTTG GATTGGTTATCCTGGCGAGGTTGGTGGAAATGTTCTTCCAGAAATCCTTTTCGGGAAATA CAACCCAGGAGGAAAGCTGCCCATAACTTGGTACCCTGAATCCTTCACTGCTGTTCCGAT GGATGATATGAACATGAGAGCTGATGCGTCACGTGGTTACCCAGGAAGAACATACAGATT TTACACTGGAGATGTAGTATATGGGTTTGGGTATGGTTTGAGCTACTCAAAATATTCGTA CAGCATCTTGCAGGCCCCAAAGAAAATCAGCTTGTCCCGTTCGTCAGTTCCAGATCTTAT CAGCAGAAAGCCTGCATACACAAGGAGGGATGGAGTAGATTATGTCCAAGTTGAAGACAT TGCCTCATGCGAGGCGCTGCAATTTCCTGTTCACATCTCGGTTTCCAACGATGGTGCCAT GGACGGGAGCCATGCCGTTCTATTGTTCGCGAGTTCGAAACCAAGCTTTCCAGGATCCCC TATAAAACAGCTAGTTGGCTTTGAGCGTGTGCACACTGCCGCTGGCAGATCAACCGATGT GGAGATCACCGTCGACCCCTGCAAGCTTATGAGCTTTGCCAACACCGAAGGCACAAGGGT GCTGTTCCTGGGAACACATGTTCTGATGGTGGGAGACGAAGAGCACGAGTTGCTCATCGA GGCATGACAAAGAGGTTACCTTTGTGTCACATCTGCCGTCTCTACAGTCCGGAGTTCAAG TCTGGGACAGCAAGTTTACACTTGTACACCTGTACAAGAAGTGTCCTGTAAAGATTTATT GGATGCAAAAAAGATTGCTCATTGCAGCAAAATTTATGACATCAATAAAATCTGGCAAAC TGTTC