Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0527700-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:26372064:26375184:1 gene:Os04g0527700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MIA40 description:CHCH domain containing protein. (Os04t0527700-01)
Sequence

ATGGGTCAAGGTCTGAGCCAGCCCGCGCAGGCGGTGGAGGAGCCTTCTCCGCCTGCCGTC
GAGGCGGCGCCGTCGTCGTCGCCGTCTCCTGCCCCGGCGCCATCTTCCCTCGAGGCGCTC
GCCGCAGAGGCTATGTCATTTGACGAGGATGGCAATGAGTCAATTGATGTGAAGGTACAG
AAAGCACTGGACTGTCCATGTGTAGCTGAGTTGAAAAATGGTCCTTGTGGAAGTCAATTT
GTTGATGCGTTCTCTTGCTTCCTGAAAAGCACAGAAGAGGAAAAGGGATCAGATTGTGTG
AAGCCTTTTATCGCACTGCAGGACTGCATCAAAATCAATCCAGAGGCGTTTTCTAAAGAG
ATTTTGGAAGAAGAGGAGAATGACGAGGAGGCTGAGAAGTCCAACCTGAAAGTTAGAGCA
CCAGCATGGTCCAGAGAATCTAAGCCAAAGCTTTGA

Peptide Sequence

PEP ID

Os04t0527700-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:26372064:26375184:1 gene:Os04g0527700 transcript:Os04t0527700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MIA40 description:CHCH domain containing protein. (Os04t0527700-01)
Sequence

MGQGLSQPAQAVEEPSPPAVEAAPSSSPSPAPAPSSLEALAAEAMSFDEDGNESIDVKVQ
KALDCPCVAELKNGPCGSQFVDAFSCFLKSTEEEKGSDCVKPFIALQDCIKINPEAFSKE
ILEEEENDEEAEKSNLKVRAPAWSRESKPKL

Transcript Sequence

Transcript ID

Os04t0527700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:26372064:26375184:1 gene:Os04g0527700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MIA40 description:CHCH domain containing protein. (Os04t0527700-01)
Sequence

GCTCCAACTCGCCGCGCCGCCGCTTGCTCCCGTTCTCGCCGTCGCAGCCCGGGAAGACGA
GAGAGTGTGGCCGCCGCCTGCTTCTTCTCTAGCGCTACACCTCGATGGGTCAAGGTCTGA
GCCAGCCCGCGCAGGCGGTGGAGGAGCCTTCTCCGCCTGCCGTCGAGGCGGCGCCGTCGT
CGTCGCCGTCTCCTGCCCCGGCGCCATCTTCCCTCGAGGCGCTCGCCGCAGAGGCTATGT
CATTTGACGAGGATGGCAATGAGTCAATTGATGTGAAGGTACAGAAAGCACTGGACTGTC
CATGTGTAGCTGAGTTGAAAAATGGTCCTTGTGGAAGTCAATTTGTTGATGCGTTCTCTT
GCTTCCTGAAAAGCACAGAAGAGGAAAAGGGATCAGATTGTGTGAAGCCTTTTATCGCAC
TGCAGGACTGCATCAAAATCAATCCAGAGGCGTTTTCTAAAGAGATTTTGGAAGAAGAGG
AGAATGACGAGGAGGCTGAGAAGTCCAACCTGAAAGTTAGAGCACCAGCATGGTCCAGAG
AATCTAAGCCAAAGCTTTGATTAGATGGTGTGGTGTTTGGCTGATACACTGATACAGGCA
TTCCTCCACCAGTCGACACACAACATCACCTTGTTTCTTCTACGAGTGCTTCCGTATTAG
ATCAATTGTTTTTGAGATGGTGGTACATAAATTTGAGTCAGCAATGAAGCGTCCAAGACA
CTTCGGCGGAAATAAGTAGTATTTCCACAATTTAATTTACAACAAACACTTACTGTTCAA
ATGGAGAACTGACGAACTTGTAATATGACGTCAGTTCTAGACGGATTATACGAGTGGGTA
AAGATCAAAGTTAA