Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0520900-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:26090701:26093766:1 gene:Os04g0520900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0520900-01);Similar to OSIGBa0131L05.6 protein. (Os04t0520900-02)
Sequence	ATGAGCGCGGCGACGGAGGAGGGGCGGCCGGACGGCGAGGAGGATTCGCCGCGCGCGGAG GCGTTCCTGGAGATCCTCGGCCGGGTCCAGCCGGGGGATGCGGAAGCGGAGCTCTCCTCC TGCGGCATCGGCCCGACGGCGGAGGTCGCGGAGCAGGTGCTCAGGTCCCGCGTCTGCTAC TCCCGCCCCAAATCCGCCGTCCGCTTCTTCGTCTGGTCGGGCCGGTCGGTGAAGCACACC GGCTACGCCTGGAACCTCCTCGTCGACATCCTCGGCAAGGCCGACATGGAGGAGCCCATG TGGGACGCCGTCCGCACCATGAACAAGGAGGGCGGCGGCCTCGTCACCGTCGCCACCTTC GCCTCCATCTTCTCCTCCTACTGCGCCAGCGGCAACCTCAGGAAGGCCGTCGAGGCCTTC GACGTCATGGGGAAGTACGGCGTGGAGCCGGACGCCGTCGCCCTCAACTCCCTCCTCTCC GCCATGTGCCGCGGGGAGGGCCGCGCGCAGGCGGCGCAGGACCTGTTCGAGCGCACCAAG GCCACCGTCGCGCCCGACGCGGACACCTTCGGGATTCTCCTCGAGGCGTGGGAGAAAGAG GGGAACGCCCAGCGCGCCAAGAGCACCTTCGGCGAGATGATTGTCCGCGTCGGCTGGGAC GCCGGCAACATGCCCGCGTACGACGCCTTCCTCTCCACGCTTGTGCGCGGGGATCAATTC GGCGAGGCGCTCAAGTTCCTTCAGGTGATGCGGTCCAAGGGCTGCCTCCCGGGGCTCAAG TTCTTCGCCAGGGCAATCGACCTTGTCGTCCGCAAGCGCGACTATGCGAACTCTTTGGCC ATTTGGCAAATGATGATCTCGGATGCTGGCCTTGTACCAAACCTCCCCATGTACAATGCC ATGATCGACCTCTGTTGCAGTGTTGGTGATACCGACTACGCCCTCCGCATGCTCGACGAA ATGCCCTTCAATGGCGTCTTTGCAGATTTTATCACGTACAATGCCATACTTGAAGGGCTC ATCAAGCAGCGCAAGGCTCGTGAGGCTGAGGCTTTCCTCGCAGAGATGAGCAAGAACGAG CAGCTGCCCTCCCCAACCAATTGTGCTGCTGCTATCAGCATGTTCTCTAAGGAGTTTAAC CCGTCAGCAGCAATCGATGTGTGGCACTGCATTGTGGAGCACCAGATTACTCCGGCTGAT GAGTCAGCCAGAGAACTAATAGTTGGGTTGCTTGATTTTGGCAGGTTTGCTGAGGTGAAG AAATATACTGATGAAATGCTTGACATGGGAATTGAGTTACCTCAGTCAACCATTGATAAT ATGAAGCGCACATTTGATAAGGTTGGCAAGCACCACACATATGACCATATTGCTAGAAGG CCAAAGCGGTGTTAG

Peptide Sequence

PEP ID	Os04t0520900-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:26090701:26093766:1 gene:Os04g0520900 transcript:Os04t0520900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0520900-01);Similar to OSIGBa0131L05.6 protein. (Os04t0520900-02)
Sequence	MSAATEEGRPDGEEDSPRAEAFLEILGRVQPGDAEAELSSCGIGPTAEVAEQVLRSRVCY SRPKSAVRFFVWSGRSVKHTGYAWNLLVDILGKADMEEPMWDAVRTMNKEGGGLVTVATF ASIFSSYCASGNLRKAVEAFDVMGKYGVEPDAVALNSLLSAMCRGEGRAQAAQDLFERTK ATVAPDADTFGILLEAWEKEGNAQRAKSTFGEMIVRVGWDAGNMPAYDAFLSTLVRGDQF GEALKFLQVMRSKGCLPGLKFFARAIDLVVRKRDYANSLAIWQMMISDAGLVPNLPMYNA MIDLCCSVGDTDYALRMLDEMPFNGVFADFITYNAILEGLIKQRKAREAEAFLAEMSKNE QLPSPTNCAAAISMFSKEFNPSAAIDVWHCIVEHQITPADESARELIVGLLDFGRFAEVK KYTDEMLDMGIELPQSTIDNMKRTFDKVGKHHTYDHIARRPKRC

Transcript Sequence

Transcript ID	Os04t0520900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:26090701:26093766:1 gene:Os04g0520900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0520900-01);Similar to OSIGBa0131L05.6 protein. (Os04t0520900-02)
Sequence	AATTTCACTTTTCCTAAATCCTAATCCCTTCGCTTGTCGCCGATGAGCGCGGCGACGGAG GAGGGGCGGCCGGACGGCGAGGAGGATTCGCCGCGCGCGGAGGCGTTCCTGGAGATCCTC GGCCGGGTCCAGCCGGGGGATGCGGAAGCGGAGCTCTCCTCCTGCGGCATCGGCCCGACG GCGGAGGTCGCGGAGCAGGTGCTCAGGTCCCGCGTCTGCTACTCCCGCCCCAAATCCGCC GTCCGCTTCTTCGTCTGGTCGGGCCGGTCGGTGAAGCACACCGGCTACGCCTGGAACCTC CTCGTCGACATCCTCGGCAAGGCCGACATGGAGGAGCCCATGTGGGACGCCGTCCGCACC ATGAACAAGGAGGGCGGCGGCCTCGTCACCGTCGCCACCTTCGCCTCCATCTTCTCCTCC TACTGCGCCAGCGGCAACCTCAGGAAGGCCGTCGAGGCCTTCGACGTCATGGGGAAGTAC GGCGTGGAGCCGGACGCCGTCGCCCTCAACTCCCTCCTCTCCGCCATGTGCCGCGGGGAG GGCCGCGCGCAGGCGGCGCAGGACCTGTTCGAGCGCACCAAGGCCACCGTCGCGCCCGAC GCGGACACCTTCGGGATTCTCCTCGAGGCGTGGGAGAAAGAGGGGAACGCCCAGCGCGCC AAGAGCACCTTCGGCGAGATGATTGTCCGCGTCGGCTGGGACGCCGGCAACATGCCCGCG TACGACGCCTTCCTCTCCACGCTTGTGCGCGGGGATCAATTCGGCGAGGCGCTCAAGTTC CTTCAGGTGATGCGGTCCAAGGGCTGCCTCCCGGGGCTCAAGTTCTTCGCCAGGGCAATC GACCTTGTCGTCCGCAAGCGCGACTATGCGAACTCTTTGGCCATTTGGCAAATGATGATC TCGGATGCTGGCCTTGTACCAAACCTCCCCATGTACAATGCCATGATCGACCTCTGTTGC AGTGTTGGTGATACCGACTACGCCCTCCGCATGCTCGACGAAATGCCCTTCAATGGCGTC TTTGCAGATTTTATCACGTACAATGCCATACTTGAAGGGCTCATCAAGCAGCGCAAGGCT CGTGAGGCTGAGGCTTTCCTCGCAGAGATGAGCAAGAACGAGCAGCTGCCCTCCCCAACC AATTGTGCTGCTGCTATCAGCATGTTCTCTAAGGAGTTTAACCCGTCAGCAGCAATCGAT GTGTGGCACTGCATTGTGGAGCACCAGATTACTCCGGCTGATGAGTCAGCCAGAGAACTA ATAGTTGGGTTGCTTGATTTTGGCAGGTTTGCTGAGGTGAAGAAATATACTGATGAAATG CTTGACATGGGAATTGAGTTACCTCAGTCAACCATTGATAATATGAAGCGCACATTTGAT AAGGTTGGCAAGCACCACACATATGACCATATTGCTAGAAGGCCAAAGCGGTGTTAGCTA TACATCACCAATTTAATCATAATAGGTATGCCTTCTTTCATATGGGTGTTTTTGGCTGTG TCAGTGAATGCCATGAATTGCATGAATTCATCTATCATCTTGACCTTATGCCATTCACTA ATAAGTCCTCATGACTTGCTAGTAAGCTACTTGGAGTGAATGTCATCAGTTGCGTGAATT CACCAATTATCTTGACCTTATGACATTCACTAATTAGTCCTCATGACTTGCAATTAAGCT ACTTGGAATTGGAGGTTTTATCCTGGACTACTAGTTTGGTTCCCTATGTTCTTGCATGAG CCAATTCCTTGTTCCTCTTGGCTGTCTTGCTCTCCTTGTCTTGTTAATATTGGAGTACCT TTTCTTGGCACGGTGCACAAGGCCACTAAAAATGACTATTCCACTGACTATTTATGTGCG CTACTTTTATGCATTTTGATAACTTTCCTTGCCCCTTTGGAAGACACTGGACATCTATGA TTCCATCTTCCTTTACAATAGGATTCATAGTGATGTTGTATGGAAATGTAGCTGTTTGGT GCTCTTCAATGGAGGAAGAACTCCTAACTCATATCTTGGGTATCTAGCGGACATGCACTT CTATCACAACAACTCATATCTTGGGTTATCTAGCGGACATGCACTTCTCTTACAACAACT CCTTGTCGATGTCTACACTACTCACCCCACTTTAAGATAGATATCTTGTGGTGGCTGTCG GGGTTTACAGACTTATGTGCCCTCGCACTAAAGTTGATGCAACCCATAAGTCCTGATTGC AGATGGACACATTGCATTGACTATCGTCTATCTTCCAGGACCTAACTATTACACATTGGC TATATGTCTAGGCTGTGGTCTCCCCTCATCTAATTATTGAGTGAGTCCCTTGTCCCAAAT TACAATGGCCTTACAGATGTGTTTTGTGCTTAACCTTTTTCTCTCTGATCACTTCCATCA TTGTAGGTGTCGTGGGCTTCTTAGTGTTTAAGCCAAGTAAAATGTGATTCAATCTTCTTT GCTCAAATCTTTGATTCCTGGTACAACATAGTCGAGATAAAACATAATGTTGTTCACTTT AGCCTGTTTGGGTTTTGCAAAACTCCATAGATATGCAGAAGAGAAATGCTATCCCACTCC ATCATGGCTTGACACTTCTTAGTCTGAACTCTGTAGAATTTTAAGGATTGCCTTCTAATT TTGGCATATTATGGACTCGAGTTCAAGATGTGGTGTACTGCGTGTCATCTTTTTTCCCTT ACCAAGTTACCCCTGCTATATAGCTTCTCCAAATGCTTTTGATCACTCTTTGAGAAAGGC ATGTTGGAAAACAGAAACATGTGGTCAGTACTGATCACACATTGCACAAGATGGTACTGT TTCTTCTTCGTTGAACCTAGATTATCTTCTTTAGTGTTTCTCTGGAACAACAAACCTCTT GAATTGTTAAAGATTCAGTAGCATTGAGTAAAACTACAACAGGTTATGTCTACTGTTACC ACTGTTTGATGCACTTCCATCCTATAGAAATCAATAGCTAATGTTTCTATTCATGACGTG TCTACCAGGGAGGATTTACATAATTAGAGTCGGGGACTTTTTTGGGGCCTTTTGTGGGTT GACTCC