Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0519700-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:26013363:26016187:1 gene:Os04g0519700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUXIN RESPONSE FACTOR 10 description:Similar to Auxin response factor 10. (Os04t0519700-01)
Sequence

ATGCTCACCTTCATGGAGCTCGCGGGGCCGACGGAAGGCGACGGCGGCGGGTCCGTGGAC
TCCCAGCTGTGGGCGGCGTGCGCGGGGAGCATGTCGTCGGTGCCGCCCGTGGGCGCGGCG
GTGTACTACTTCCCGCAGGGCCACGCGGAGCAGGCGAGCGCGGCCGTGGACCTGTCGTCC
GCGCGCGTCCCGCCGCTCGTGCCGTGCCGGGTTGTCGCCGTGCGGTTCATGGCCGACGCG
GAGAGCGACGAGGTCTTCGCCAAGATACGCCTCGTCCCGCTACGCCCCGGCGACGCGGTG
GTGGACGTGGGCGAGGCGGCCGCGGCCGAGGCGCGGCGGGAGGAGGAGAATAGTAGGCCG
AGGCCGACGTCGTTCGCCAAGACGCTGACGCAGTCCGACGCGAACAACGGCGGGGGGTTC
TCCGTGCCGCGGTTCTGCGCCGAGACCATCTTCCCGGAGCTGGACTACAGCAGCGAGCCG
CCCGTGCAGTCCGTCTGCGCCAAGGACGTGCACGGTGTGGAGTGGACGTTCCGGCACATC
TACCGGGGCACCCCGCGCCGGCACCTGCTCACCACGGGGTGGAGTCCCTTCGTCAACAAG
AAGCAGCTCACGGCCGGCGACTCCATCGTGTTCATGCGTGACGAGGGCGGGAACATCCAC
GTCGGGCTCCGCCGCGCTAAACGCGGGTTCTGCAGCATCGGCGGCGACGACGAGAGCCTC
TCCTCGATTCCCGGGTGGGACCAGTACAGGGGCTTGATGCGGCGCAATGCGACCGCGACC
GCGACCGGTGGGAGAACCCCGCCCAAGGGGAAGGTCCCGCCGGAGAACGTGCTCACGGCG
GCGACGAGGGCCACCACCGGGCAGCCGTTCGAGGTGCTGTACTACCCGCGGGCGAGCACG
CCCGAGTTCTGCGTGAGGGCGGCCGCGGTCAGGACGGCCATGGCCGTGCAGTGGTGCCCC
GGCATGCGGTTCAAGATGGCGTTCGAGACAGAGGACTCGTCGCGGATCAGCTGGTTCATG
GGCACTGTCGCCGGCGTCCAGGCCTCCGACCCCGTCCGTTGGCCGCAGTCGCCATGGCGT
CTCCTTCAGGTACACCTACACGGCACCAACATGAGACAACCCCAACTCGATCACGATAGA
GTCGTAGAGTTCTTGATCAATTGGCCTCCTCGCAGGTGA

Peptide Sequence

PEP ID

Os04t0519700-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:26013363:26016187:1 gene:Os04g0519700 transcript:Os04t0519700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUXIN RESPONSE FACTOR 10 description:Similar to Auxin response factor 10. (Os04t0519700-01)
Sequence

MLTFMELAGPTEGDGGGSVDSQLWAACAGSMSSVPPVGAAVYYFPQGHAEQASAAVDLSS
ARVPPLVPCRVVAVRFMADAESDEVFAKIRLVPLRPGDAVVDVGEAAAAEARREEENSRP
RPTSFAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHI
YRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFMRDEGGNIHVGLRRAKRGFCSIGGDDESL
SSIPGWDQYRGLMRRNATATATGGRTPPKGKVPPENVLTAATRATTGQPFEVLYYPRAST
PEFCVRAAAVRTAMAVQWCPGMRFKMAFETEDSSRISWFMGTVAGVQASDPVRWPQSPWR
LLQVHLHGTNMRQPQLDHDRVVEFLINWPPRR

Transcript Sequence

Transcript ID

Os04t0519700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:26013363:26016187:1 gene:Os04g0519700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUXIN RESPONSE FACTOR 10 description:Similar to Auxin response factor 10. (Os04t0519700-01)
Sequence

TGGAAACCACCTCATTAGTCATCCCATCGAGTTGGGTTGAGAGATGCTCACCTTCATGGA
GCTCGCGGGGCCGACGGAAGGCGACGGCGGCGGGTCCGTGGACTCCCAGCTGTGGGCGGC
GTGCGCGGGGAGCATGTCGTCGGTGCCGCCCGTGGGCGCGGCGGTGTACTACTTCCCGCA
GGGCCACGCGGAGCAGGCGAGCGCGGCCGTGGACCTGTCGTCCGCGCGCGTCCCGCCGCT
CGTGCCGTGCCGGGTTGTCGCCGTGCGGTTCATGGCCGACGCGGAGAGCGACGAGGTCTT
CGCCAAGATACGCCTCGTCCCGCTACGCCCCGGCGACGCGGTGGTGGACGTGGGCGAGGC
GGCCGCGGCCGAGGCGCGGCGGGAGGAGGAGAATAGTAGGCCGAGGCCGACGTCGTTCGC
CAAGACGCTGACGCAGTCCGACGCGAACAACGGCGGGGGGTTCTCCGTGCCGCGGTTCTG
CGCCGAGACCATCTTCCCGGAGCTGGACTACAGCAGCGAGCCGCCCGTGCAGTCCGTCTG
CGCCAAGGACGTGCACGGTGTGGAGTGGACGTTCCGGCACATCTACCGGGGCACCCCGCG
CCGGCACCTGCTCACCACGGGGTGGAGTCCCTTCGTCAACAAGAAGCAGCTCACGGCCGG
CGACTCCATCGTGTTCATGCGTGACGAGGGCGGGAACATCCACGTCGGGCTCCGCCGCGC
TAAACGCGGGTTCTGCAGCATCGGCGGCGACGACGAGAGCCTCTCCTCGATTCCCGGGTG
GGACCAGTACAGGGGCTTGATGCGGCGCAATGCGACCGCGACCGCGACCGGTGGGAGAAC
CCCGCCCAAGGGGAAGGTCCCGCCGGAGAACGTGCTCACGGCGGCGACGAGGGCCACCAC
CGGGCAGCCGTTCGAGGTGCTGTACTACCCGCGGGCGAGCACGCCCGAGTTCTGCGTGAG
GGCGGCCGCGGTCAGGACGGCCATGGCCGTGCAGTGGTGCCCCGGCATGCGGTTCAAGAT
GGCGTTCGAGACAGAGGACTCGTCGCGGATCAGCTGGTTCATGGGCACTGTCGCCGGCGT
CCAGGCCTCCGACCCCGTCCGTTGGCCGCAGTCGCCATGGCGTCTCCTTCAGGTACACCT
ACACGGCACCAACATGAGACAACCCCAACTCGATCACGATAGAGTCGTAGAGTTCTTGAT
CAATTGGCCTCCTCGCAGGTGACCTGGGACGAGCCGGAGCTCCTACAGAACGTAAAGCGC
GTGTGCCCGTGGCTGGTGGAGCTCGTGTCGAGCATGCCCAACCTCCACCTGCCATCCTTC
TCGCCGCCGCGCAAGAAGCCGCGCAACCCGCCTTACGCGGAGCTCCCCCTCGAGGGCCAG
ATCTTCACCGGCCCGGTGTTCCCGCCCAATCCAATGGCGCACGACCACCACCACCACCAT
GGTTTCCCTTTCCTCCCCTTCCCGGACAGTAGTGCTCAACCTGCAGGCATACAGGGAGCC
AGGCATGCGCAGTTCGCTTCACCGTTCCCGGAGTTCCACATCGGCAACCTGCAGCCGAAT
CTGATGCTCTACGCCGGCATCCGCCTCCCGCCCGCCGATCGCGCCGCCCCCGCTCCTCGC
CCGCCGAGAATCATCATCAGCACCGACCTGACGATTGGCAGCCCGGGTAAACCCGACGAC
GCCGCGTGCTCTCCCTCATCCGGCGGCAAGAAGATCGACGACACCAAGCCGCGGGGGTTT
CTCCTCTTTGGACAGGCAATTCTAACCGAGGAGCAGATCAAGAACGGCAACTCCGATGGT
CGTCCGGCCTCGCCGAACTGGGACGCCGAGAAGGCGCCTAACACCTCGGAAGGCTCCGAC
TCCGGCGTCACCCAGGGCAGCCCCACCAAGAACACCACGCCGTCGTGGAGCCTACCGTAT
TTTGGAGGCAACAACATCAGCCGCGCATCCGAGTACGAGCTGAATCCCGGGCAGTGCAAG
GTGTTCGTCGAGTCGGAAACCGTCGGCCGGAGCCTCGATCTCTCGGCGCTGAGCTCGTTC
GAGGAGCTGTACGCCTGCCTGTCTGATATGTTCAGCATTGGCAGCGATGAACTGAGGAGC
CATCTGGTGTACCGCAGCCCCGCCGGCGAAGTCAAGCACGCCGGCGACGAGCCATTCTGG
TGAGCACACTAGCCGTTCGCCCGTTCCTCGTCAATACTAGTTGTATTTACCACTCGGTTA
TCAATTCTTGATCTGAAACTTAGCGACTTTTCTGTCATTTGCAGCGCGTTCGTGAAATCG
GCGCGTAAGCTTAGGATACTGACAGATGCTGGCAGTGACAACCTGGGAGATTAGAAGAAG
TAATAAATCAGCCGAATAACTTAGGGCGCTACTCCTAGTCTTTTAGAAGCAAAAATAAGC
CGAGAGCTGCATGCACGTACAGCTGCATGAGCTGCGGTTTCTCCTTGCTCCAGTCCAGTC
TAGAGATTTTTATTCAGGGTAAAGCTGATGCAGTCTTCAGTTAATTAGGTGTTTTTTAGT
CCTTTTTACAGCTTTCTCGCTAGGGGTTTCAGGTAACAACTACTAGCGCAAAGTGCAGAC
AGAATGTAGTCTTTGCACCTTGGTCATCAAATCAAATGTACTGGTACTTCTTTTATTCTC
ATTCGGCGGATATTGAGCCTTAATTTGTTTCACGAAATTGAATGCTTCTGCCGCACCAGA
CCAAGGTGACAGGATTAGTGCAGGTGCAGGCTTACCTGTATGCAGTAATTACTATCTGCC
GGAATATTTACTCGGCGCTGGCACTGCTGATTCTGAATTCTGTATAGAGGCTCTCAGCTC
CAGGC