Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0514500-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:25702414:25707446:-1 gene:Os04g0514500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0514500-01);Similar to OSIGBa0140J09.3 protein. (Os04t0514500-02)
Sequence	ATGCGCTCCGCCGCCCGCGTCCGCCTCGCGCCCAAACCGAGAGCCAACCAGCCTCCTCCT CCTCCTCCTCCTCCGTTTCGGCTCGCCCCCGCCGCCGTCGCGGCGCTCGGATCCCACCCC GACGCCTCCTCCTACGCCAGCCTCCTCTCCTCCCTCTCCAGAGAGTGCCACGCCCGCCAC CCGTTCGACGCAAGTCCCCCGAGAGCCCGCCACTCGCAGACATGCAGGGCCTTGCACGGC CGGATACTGCGCGGCGGATCACCCCTCCTGGGACGCCTCGGCGACTCGCTCGTCGAACTG TACTGCAAGTCCGGCCGTGTGGGCTATGCCTGGAGCGCCCTGGGATACGCCGGGGAGCGG GCTTCAGGCGCGGCGAGCTCCCTGCTGTCCTGCCATGCGCGGTCGGGGTCCCCTGGGGAT GTTCTCGGCGCGTTCCGGTATATCAGGTGCACTGCCGGTGGCCGGCCGGACCAGTTTGGT CTTGCGGTCGTTCTGTCGGCGTGTTCCAGGGTGGGTGTTCTTGCTTACGGCAGGCAGGTG CATTGCGATGTGGTCAAGAGCGGGTTCAGTTCCAGTGTCTTCTGCGAAGCGGCGTTGGTG GACATGTATGCCAAATGCGGTGATGTGCCCAATGCTCGCAGGGTGTTTGATGGGATTGCT TGCCCAGACACAATATGCTGGTCAAGCATGATTGCTTGCTATCATCGAGTTGGATGCTAC CAGGAAGCGTTGGCTTTGTTTTCTAGGATGGATAAGATGGGCTCTGCTCCGGATCAAGTG ACACTTGTTACCATCATTTCCACACTTGCAAGCTCGGGCAGGCTGGACCATGCAACAGCT TTGCTGAAGAAGATGCCTACACCAAGCACAGTTGCTTGGAATGCTGTCATCTCTGGTCAC GCACAAAGTGGACTCGAGTTTAATGTGCTTGGCTTGTACAAGGATATGAGGAGCTGGGGG TTATGGCCCACTAGATCAACTTTTGCAAGCATGCTAAGTGCAGCGGCTAACATGAAAGCT TTTGTTGAAGGCCAGCAGATGCATGCTGCAGCAGTAATGCATGGCTTGGATGCAAATGTA TTTGTGGGAAGTTCTCTGATCAACCTGTATGCTAAATGTGGCTGCCCCAGTGACGCGAAG AATGTTTTCGACTTGTCCTGTGAAAAGAACATTGTCATGTGGAACGCTATGCTCACAGGT TTTGTTCAGAATGAATTGCCAGAGGAAGCTATTAGAATGTTTCAGTATATGATGAGGTAT ACCCTTCAAACCGATGAATTTACGTTTGTCAGTATTCTTGGTGCATGCACCTACTTGAGT TCCTTTTATCTGGGAAAACAAGTACATTGTGTAACAATCAAGAACTGCATGGATATAAGC TTGTTTGTTGCTAATGCAACACTAGATATGTACTCAAAATATGGAGCAATTGGTGATGCA AAGGCACTATTCAGTCTAATCCCTTACAAGGATAGTATATCCTGGAATGCCCTTACAGTA GGACTTGCACAGAACCTAGAGGAGGAAGAAGCAGTGTGTATGCTCAAAAGGATGAGGCTG CATGGTATAACACCCGATGATGTATCTTTTTCTACTGCAATTAATGCTTGTTCCAATATC CGAGCCACTGAAACTGGAAAGCAGATCCATTGCCTGGCCATCAAATATGGTATCTGCTCA AATCATGCTGTTGGTAGCTCTCTGATTGACTTGTATTCAAAGCATGGAGATGTAGAGTCT TCTAGGAAGATTTTTGCACAAGTAGATGCGAGTAGTATAGTGCCAATAAATGCTTTAATT GCAGGTTTTGTGCAGAACAATAATGAAGATGAAGCAATACAACTGTTTCAGCAAGTTCTA AAAGATGGTTTAAAGCCCTCCAGTGTTACATTTTCAAGCATTCTTTCTGGCTGTAGTGGA TCTCTTAATTCAGCTATTGGCAAGCAAGTTCATTGTTACACACTGAAGTCTGGTGTTCTA TATGATGATACTCTCCTTGGTGTTTCATTGGCTGGAATATATTTGAAGTCCAAAATGCTT GAGGATGCAAATAAACTCTTAACAGAAATGCCAGATCACAAAAACCTGTTTGAGTGGACA GCTATCATTTCAGGGTATGCTCAAAATGGTTATGGTGATCACTCTTTGGTGTCATTTTGG AGAATGCGTCATTGTAATGTTCGCTCGGATGAGGCAACATTTGCAAGTGTTCTTAAAGCT TGTTCGGATGTAACGGCTTTTGCAGATGGGAAAGAGATACATGGCCTCATCACTAAATCT GGGTTTGGTTCTTATGAAACTGCAACTAGTGCCCTCATAGACATGTATTCCAAGTGTGGG GATGTCATTTCTTCCTTTGAAGCCTTCAAAGAATTGAAAAACAAACAAGATATAATGCCA TGGAACTCTATGATTGTTGGATTTGCAAAAAATGGTTATGCTGATGAGGCACTTCTGCTT TTCCAGAAGATGGAGGAGTTGCAGATAAAGCCTGACGAAGTTACATTCCTAGGTGTCCTA ATTGCTTGTACTCATTCTGGGCTAATTTCTGAAGGTCGGCATTTCTTTGGTTCCATGAGA AAAGTTTATGGATTAACACCTAGACTAGATCATTATGCCTGTTTTATTGATCTCCTTGGA CGTGGTGGTCATCTTCAAGAGGCCCAAGAAGCTATTGACCAGTTGCCTTTCAGACCTGAT GGTGTGGTCTGGGCTACGTATCTTGCAGCATGCAGAATGCACAAGGATGAAGAAAGGGGG AAAATTGCAGCAAGGAAACTTGTTGAGTTGGAACCACAATACTCATCTACATATGTGTTG CTTTCAAGCTTACATGCTGCTACTGGTAACTGGGCTGAAGCTAAGGTAACCAGAGAATCA ATGCGAGAAAAAGGAGTGGCAAAATTTCCAGGATGTAGTTGGATTACCGTGGGAAACAAG ACAAGCTTGTTTCTTGTACAGGATAAATACCACCCTGACAATCTTAGAATCTATGAAATG CTTGGTGATCTAACTGGAATGATGAAGAAAGATAACGATATTGATGAGTATGGTCTACTT TATTCAGCTGAAATGCTTGCTTGA

Peptide Sequence

PEP ID	Os04t0514500-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:25702414:25707446:-1 gene:Os04g0514500 transcript:Os04t0514500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0514500-01);Similar to OSIGBa0140J09.3 protein. (Os04t0514500-02)
Sequence	MRSAARVRLAPKPRANQPPPPPPPPFRLAPAAVAALGSHPDASSYASLLSSLSRECHARH PFDASPPRARHSQTCRALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGER ASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQV HCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCY QEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGH AQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANV FVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRY TLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDA KALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNI RATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALI AGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVL YDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFW RMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCG DVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVL IACTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPD GVVWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRES MREKGVAKFPGCSWITVGNKTSLFLVQDKYHPDNLRIYEMLGDLTGMMKKDNDIDEYGLL YSAEMLA

Transcript Sequence

Transcript ID	Os04t0514500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:25702414:25707446:-1 gene:Os04g0514500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0514500-01);Similar to OSIGBa0140J09.3 protein. (Os04t0514500-02)
Sequence	TGCGGCGGCGGCCGCGGCCGTGCACACATGCGCTCCGCCGCCCGCGTCCGCCTCGCGCCC AAACCGAGAGCCAACCAGCCTCCTCCTCCTCCTCCTCCTCCGTTTCGGCTCGCCCCCGCC GCCGTCGCGGCGCTCGGATCCCACCCCGACGCCTCCTCCTACGCCAGCCTCCTCTCCTCC CTCTCCAGAGAGTGCCACGCCCGCCACCCGTTCGACGCAAGTCCCCCGAGAGCCCGCCAC TCGCAGACATGCAGGGCCTTGCACGGCCGGATACTGCGCGGCGGATCACCCCTCCTGGGA CGCCTCGGCGACTCGCTCGTCGAACTGTACTGCAAGTCCGGCCGTGTGGGCTATGCCTGG AGCGCCCTGGGATACGCCGGGGAGCGGGCTTCAGGCGCGGCGAGCTCCCTGCTGTCCTGC CATGCGCGGTCGGGGTCCCCTGGGGATGTTCTCGGCGCGTTCCGGTATATCAGGTGCACT GCCGGTGGCCGGCCGGACCAGTTTGGTCTTGCGGTCGTTCTGTCGGCGTGTTCCAGGGTG GGTGTTCTTGCTTACGGCAGGCAGGTGCATTGCGATGTGGTCAAGAGCGGGTTCAGTTCC AGTGTCTTCTGCGAAGCGGCGTTGGTGGACATGTATGCCAAATGCGGTGATGTGCCCAAT GCTCGCAGGGTGTTTGATGGGATTGCTTGCCCAGACACAATATGCTGGTCAAGCATGATT GCTTGCTATCATCGAGTTGGATGCTACCAGGAAGCGTTGGCTTTGTTTTCTAGGATGGAT AAGATGGGCTCTGCTCCGGATCAAGTGACACTTGTTACCATCATTTCCACACTTGCAAGC TCGGGCAGGCTGGACCATGCAACAGCTTTGCTGAAGAAGATGCCTACACCAAGCACAGTT GCTTGGAATGCTGTCATCTCTGGTCACGCACAAAGTGGACTCGAGTTTAATGTGCTTGGC TTGTACAAGGATATGAGGAGCTGGGGGTTATGGCCCACTAGATCAACTTTTGCAAGCATG CTAAGTGCAGCGGCTAACATGAAAGCTTTTGTTGAAGGCCAGCAGATGCATGCTGCAGCA GTAATGCATGGCTTGGATGCAAATGTATTTGTGGGAAGTTCTCTGATCAACCTGTATGCT AAATGTGGCTGCCCCAGTGACGCGAAGAATGTTTTCGACTTGTCCTGTGAAAAGAACATT GTCATGTGGAACGCTATGCTCACAGGTTTTGTTCAGAATGAATTGCCAGAGGAAGCTATT AGAATGTTTCAGTATATGATGAGGTATACCCTTCAAACCGATGAATTTACGTTTGTCAGT ATTCTTGGTGCATGCACCTACTTGAGTTCCTTTTATCTGGGAAAACAAGTACATTGTGTA ACAATCAAGAACTGCATGGATATAAGCTTGTTTGTTGCTAATGCAACACTAGATATGTAC TCAAAATATGGAGCAATTGGTGATGCAAAGGCACTATTCAGTCTAATCCCTTACAAGGAT AGTATATCCTGGAATGCCCTTACAGTAGGACTTGCACAGAACCTAGAGGAGGAAGAAGCA GTGTGTATGCTCAAAAGGATGAGGCTGCATGGTATAACACCCGATGATGTATCTTTTTCT ACTGCAATTAATGCTTGTTCCAATATCCGAGCCACTGAAACTGGAAAGCAGATCCATTGC CTGGCCATCAAATATGGTATCTGCTCAAATCATGCTGTTGGTAGCTCTCTGATTGACTTG TATTCAAAGCATGGAGATGTAGAGTCTTCTAGGAAGATTTTTGCACAAGTAGATGCGAGT AGTATAGTGCCAATAAATGCTTTAATTGCAGGTTTTGTGCAGAACAATAATGAAGATGAA GCAATACAACTGTTTCAGCAAGTTCTAAAAGATGGTTTAAAGCCCTCCAGTGTTACATTT TCAAGCATTCTTTCTGGCTGTAGTGGATCTCTTAATTCAGCTATTGGCAAGCAAGTTCAT TGTTACACACTGAAGTCTGGTGTTCTATATGATGATACTCTCCTTGGTGTTTCATTGGCT GGAATATATTTGAAGTCCAAAATGCTTGAGGATGCAAATAAACTCTTAACAGAAATGCCA GATCACAAAAACCTGTTTGAGTGGACAGCTATCATTTCAGGGTATGCTCAAAATGGTTAT GGTGATCACTCTTTGGTGTCATTTTGGAGAATGCGTCATTGTAATGTTCGCTCGGATGAG GCAACATTTGCAAGTGTTCTTAAAGCTTGTTCGGATGTAACGGCTTTTGCAGATGGGAAA GAGATACATGGCCTCATCACTAAATCTGGGTTTGGTTCTTATGAAACTGCAACTAGTGCC CTCATAGACATGTATTCCAAGTGTGGGGATGTCATTTCTTCCTTTGAAGCCTTCAAAGAA TTGAAAAACAAACAAGATATAATGCCATGGAACTCTATGATTGTTGGATTTGCAAAAAAT GGTTATGCTGATGAGGCACTTCTGCTTTTCCAGAAGATGGAGGAGTTGCAGATAAAGCCT GACGAAGTTACATTCCTAGGTGTCCTAATTGCTTGTACTCATTCTGGGCTAATTTCTGAA GGTCGGCATTTCTTTGGTTCCATGAGAAAAGTTTATGGATTAACACCTAGACTAGATCAT TATGCCTGTTTTATTGATCTCCTTGGACGTGGTGGTCATCTTCAAGAGGCCCAAGAAGCT ATTGACCAGTTGCCTTTCAGACCTGATGGTGTGGTCTGGGCTACGTATCTTGCAGCATGC AGAATGCACAAGGATGAAGAAAGGGGGAAAATTGCAGCAAGGAAACTTGTTGAGTTGGAA CCACAATACTCATCTACATATGTGTTGCTTTCAAGCTTACATGCTGCTACTGGTAACTGG GCTGAAGCTAAGGTAACCAGAGAATCAATGCGAGAAAAAGGAGTGGCAAAATTTCCAGGA TGTAGTTGGATTACCGTGGGAAACAAGACAAGCTTGTTTCTTGTACAGGATAAATACCAC CCTGACAATCTTAGAATCTATGAAATGCTTGGTGATCTAACTGGAATGATGAAGAAAGAT AACGATATTGATGAGTATGGTCTACTTTATTCAGCTGAAATGCTTGCTTGAGTGTGCTGG TGCTGCTTAAGAGCAAAGGGCCTTAATTCATCTTCTGGATCATCGAGGACCTTCAATAAA TGCATGTTTAGTTGAGAGATTTGGAATGTTATGCATATTATTTATTCAAAAGTACATATA CTCGTACCAATAATTGCTTTACTTGCTGCAATTGCAGCACCAGACTTTGAAAAGGATCAG CACCGCTAGGTGATATTGGATTGGCAAATATCAGAAGTGGACATGACAATGGGCCTGCTA TTTTTCATCTAAATGATCCTCAGAGGATTATTTGGACGGAGGACAACTGGCCATATTTGG AAAAGAACCTACTCAAGTTAATTGTTATGTCAGAAACAGTCCAAACAGCAAAGGCACTAA CACTGGCCATGTGAATACTATTCTTCAACTGTTGTGAAAAAGAACTTGAATAATTGGCAA GTATCTATCTACATAAACTGTTATAGATGTTCACAAATGAAACAGCATGTTGGTCCAGCA CGTTGCTTAGTTCGTGGCTACTGTCTTCCCTTCACAAACATCACATACAATTGAACCAAG GCCTTCACAGTATGGACACTTCGTATCTTCACCGACCCACTCCAAAAACTGCATTTTGAG GGGTAAACAGAAAGGAAGAAAGAAAAAGGTCTTGTCAGGAGTCGCAACTCACAAGCAGCT CATTTCTCAATACATTACAAATGCTGTACATGTTGTGCCACCAAGCAGCAAATGTTATTA CCTACGCACATGAGGCGGCCTTCACCCCGACAAGAGATGCACTTCTTAGTTGATGCATTG GTAGCGCTGCTGATTGGTTTATTCTTCTGTGTTAGCCTAGATGGGTCTTCCCACCTGTTT TCACCGATGAGAAACACTCTATTTTCAGACAACCCTACTCCTGAGACACCATTTCCTTTC ACAACAGTTTGTTGAATCTCTGCAATTTCTGTTATGGAGGGAATGGCTGCTCCATTTATG CCATCCTACAAGAGAGTTGGATTAGAATATCATGCCATGACT