Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0513301-00
CDS Infomation

cds chromosome:IRGSP-1.0:4:25646120:25647068:-1 gene:Os04g0513301 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase. (Os04t0513301-00)
Sequence

CATCTAGCAGTAGCACCACGTGGACCGCCACCTCGAGGGGTCAGTACCCGTCCCGCCGTG
GGTGTCCGACGAGGACTGGAGGATGCTCACCAGCGGCGAGGAATTCGTTGTCGGGCTGAC
ACCGAACGTGACAGTGGCCAACGACGGCAGCGGCGACTTCACCAACATCTCGGCGGCGCT
GGACGCCCTGCCGGAGACGTACACCGGGAAGTACATCATCTACGTGAAGGAACGCGTCTA
CGACGAGACGGTGAATTGAACGTCACCAGCCGAATGGCCAACATCACCATGTACGGCGAT
TGCTCCAAGAAATCCATCATCACCGGCAGCAAGAACATCGCCGACGGCGTCAGGATATGG
AAGACAGCCACCTTCGCGGTGGACAGCGACCGGTTCACGGCGATGAGGCTGGGGATACGG
AACACGGCGGGGGAGGAGAAGCAGCAGACGTTGGCGCTACGGGTGAAGGCGGACAAGAGC
ATCTTTTTCAACTGCCGGATCGAGGGGAACCAGGACACGCTGTTCGCGCAGGCCTACCGC
CAGTTCTACCGGAGCTGCGTCATCCTCGTCAAGCCTTCGCTCCCGGGAAAACCCACCGTG
GTGACTGCGCACGGGCGTCGCGACCGGCAACAGACCACGGGGTTCGTGGTGCACCACAGC
CAGGTGGTGGCCGCTGCACCGCCCGCCGCCTTCGCCCGCCCGCGCGCCGCTCGCCTGCGC
CCACCGGGCGCCGCCCGTGGAGAAGATAGGTGA

Peptide Sequence

PEP ID

Os04t0513301-00
PEP Infomation

pep chromosome:IRGSP-1.0:4:25646120:25647068:-1 gene:Os04g0513301 transcript:Os04t0513301-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase. (Os04t0513301-00)
Sequence

HLAVAPRGPPPRGVSTRPAVGVRRGLEDAHQRRGIRCRADTERDSGQRRQRRLHQHLGGA
GRPAGDVHREVHHLREGTRLRRDGELNVTSRMANITMYGDCSKKSIITGSKNIADGVRIW
KTATFAVDSDRFTAMRLGIRNTAGEEKQQTLALRVKADKSIFFNCRIEGNQDTLFAQAYR
QFYRSCVILVKPSLPGKPTVVTAHGRRDRQQTTGFVVHHSQVVAAAPPAAFARPRAARLR
PPGAARGEDR

Transcript Sequence

Transcript ID

Os04t0513301-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:25646120:25647068:-1 gene:Os04g0513301 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectinesterase. (Os04t0513301-00)
Sequence

CGCGAGATCTCCAGCAACACCATCGCCATCATCCAGCAGGGCGCCGCCTTCGCCGCCATG
CTCGACCTCCACGCCATCGAGAGCCACGCCGGCGGCAGCGAGGTCGACGTCGAGGATGAC
ATCTAGCAGTAGCACCACGTGGACCGCCACCTCGAGGGGTCAGTACCCGTCCCGCCGTGG
GTGTCCGACGAGGACTGGAGGATGCTCACCAGCGGCGAGGAATTCGTTGTCGGGCTGACA
CCGAACGTGACAGTGGCCAACGACGGCAGCGGCGACTTCACCAACATCTCGGCGGCGCTG
GACGCCCTGCCGGAGACGTACACCGGGAAGTACATCATCTACGTGAAGGAACGCGTCTAC
GACGAGACGGTGAATTGAACGTCACCAGCCGAATGGCCAACATCACCATGTACGGCGATT
GCTCCAAGAAATCCATCATCACCGGCAGCAAGAACATCGCCGACGGCGTCAGGATATGGA
AGACAGCCACCTTCGCGGTGGACAGCGACCGGTTCACGGCGATGAGGCTGGGGATACGGA
ACACGGCGGGGGAGGAGAAGCAGCAGACGTTGGCGCTACGGGTGAAGGCGGACAAGAGCA
TCTTTTTCAACTGCCGGATCGAGGGGAACCAGGACACGCTGTTCGCGCAGGCCTACCGCC
AGTTCTACCGGAGCTGCGTCATCCTCGTCAAGCCTTCGCTCCCGGGAAAACCCACCGTGG
TGACTGCGCACGGGCGTCGCGACCGGCAACAGACCACGGGGTTCGTGGTGCACCACAGCC
AGGTGGTGGCCGCTGCACCGCCCGCCGCCTTCGCCCGCCCGCGCGCCGCTCGCCTGCGCC
CACCGGGCGCCGCCCGTGGAGAAGATAGGTGA