Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0512400-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:25611673:25615824:-1 gene:Os04g0512400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPHC-12, RING-HC protein 12 description:Similar to Midline 1 protein (Tripartite motif protein 18). (Os04t0512400-01)
Sequence	ATGGAGAGCTTCAGGAGGTTCCTGAACCCGCTGGTGCTCAACCTGCAGAAGATGGAGCTG GAGCTCACCTGCCCCGTCTGCCTGAAGTTGCTCAACGCGCCTACCATGCTGCCATGTTAC CACACTTCCTGCAGCAAGTGTGCTACTACACGGACCATGGACGGTTACAGCTGCGCGATT TGCAAATCAGCTTATCGTTCTCAAGACCTAAGGCCTGCCTCTCACCTCGAGGCAATAGTG AACATCCACAGGAGCCTAAGCTCTACAGTCAGCAGCATGGTCACTCAGCAGGAGGCTCAA GCTGATATTCCTGTTGCAAAGACATCATTTCAAGGAACTCCAGAATCGGGAAACAGAAAT GGAGCAGAGAAATCTGATCAGGTGAAATCATACACCCCGGTTGCTTCTAAACTGGCATAT AACCAGTCAACTGGGCTTGCATATGGAAATGTGGACGGCGTGAAAGAAAGAAATCCTGCA TTGGAGACTAGAGGTGCGGCTGATGTGACTGCTATGCCCACAATTCTTGTGCAGAAGGGA CCCTGCCGATCTCAATCTTCTGATGGCCCTAGGGATCTGGATTGCGACAGCAATGACCTT GAAGGAGAGCTGATAACAAGCAGATCATCTCCTCAAAGTGTCTTGAAAAGAGAACCAAAT ACAGCGAATGATGATAATAGAGAATTAAAAAGGCAAAAGTCCACTGATCAGGATGATAGA CAACCAGCTGTTGCTGGTGCTTGGAAATGTGAATTTTGTCACTCTTCCAAAACCACTGAG AGTACTGGCCCTCTGTCCCATTATCTGCATGGTGAGCCATTAGAGGATAACCAAGCATGG AAACCAAACGTTTTACATGTTCATGAGAAGTGCATTGAATGGGCCCCTCAAGCGTTCTTT ACTGGTGACATTGCAAATAACTTGGAGCCTGAGTTGGCCCGTGCTTCTAAGATCAAATGC AGTGTTTGTGGACTAAAAGGTGCAGCCCTTGGCTGCCTTGTCAAGAGCTGCCGCAAGAGC TTTCATGTTCCATGTGCCCATGGGATATCAGGCTGCCGATGGGATGATGAGAACTTTGTT ATGCTGTGTCCTTCTCATTCCTCGAAGAAGTTGCCATGTGAGAGATCAAAGTCAAAAAAT AAGAAGACCAGCTTGCAGCGATCATCTTCCGATACAATGCTTGATGACCTGAACTCACCA TCTACAATCCATATGGATGGACTTTGGACTGCTTCACCTTTTCTCACTAGTGAATGGGTT ATATGTGGATCTGCTCTCTCTAGTCAGGAGAAGGAAATCTTGGACCAGTTTGAGCACCAA ACTGGCATCACTGTAACTAACGGTTGGAGGTCGAATGTGACTCATGTGATTGCTAATACG GATGAATGTGGGGCATGTGCCAGGACACTCAAGGTTCTCATGGCCATACTAGCTGGGAAA TGGGTTCTGAATATAAACTGGCTGAAAGCTTGTATGGAGGCTAAAGAACCAGTCCCAGAA GAGCCTTATGAGATCAGTTCTGATGTTCATGGCTCCTTTGATGGCCCTCGCATGGGAAGA CTACGAGCAATGCAAAATGCACCACATCTGTTTGCAGGATTGACCTTTTACTTCAGTGGC CATTTCATGCCCAATTACAAGGTTCACCTTGAAGATTTGATCACTGCAGCTGGGGGATCA ATCTTGGACAAGGCTGATCTCTCTAGCACATCCTTGATAATTTACAGCATGGAGCCACCA CAAGGAAGTGATCCTGATACCCTTAATGAGGTCATCAGAAAGAGGAAGGCTGAGGCTGAA GAATTGGCGGCAACGATTGGCTCCAGGGCTGTTCCTCATACATGTGTTCTGGATTCTATT GCATCATGCACAGTGCAATTGACCATGTGA

Peptide Sequence

PEP ID	Os04t0512400-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:25611673:25615824:-1 gene:Os04g0512400 transcript:Os04t0512400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPHC-12, RING-HC protein 12 description:Similar to Midline 1 protein (Tripartite motif protein 18). (Os04t0512400-01)
Sequence	MESFRRFLNPLVLNLQKMELELTCPVCLKLLNAPTMLPCYHTSCSKCATTRTMDGYSCAI CKSAYRSQDLRPASHLEAIVNIHRSLSSTVSSMVTQQEAQADIPVAKTSFQGTPESGNRN GAEKSDQVKSYTPVASKLAYNQSTGLAYGNVDGVKERNPALETRGAADVTAMPTILVQKG PCRSQSSDGPRDLDCDSNDLEGELITSRSSPQSVLKREPNTANDDNRELKRQKSTDQDDR QPAVAGAWKCEFCHSSKTTESTGPLSHYLHGEPLEDNQAWKPNVLHVHEKCIEWAPQAFF TGDIANNLEPELARASKIKCSVCGLKGAALGCLVKSCRKSFHVPCAHGISGCRWDDENFV MLCPSHSSKKLPCERSKSKNKKTSLQRSSSDTMLDDLNSPSTIHMDGLWTASPFLTSEWV ICGSALSSQEKEILDQFEHQTGITVTNGWRSNVTHVIANTDECGACARTLKVLMAILAGK WVLNINWLKACMEAKEPVPEEPYEISSDVHGSFDGPRMGRLRAMQNAPHLFAGLTFYFSG HFMPNYKVHLEDLITAAGGSILDKADLSSTSLIIYSMEPPQGSDPDTLNEVIRKRKAEAE ELAATIGSRAVPHTCVLDSIASCTVQLTM

Transcript Sequence

Transcript ID	Os04t0512400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:25611673:25615824:-1 gene:Os04g0512400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPHC-12, RING-HC protein 12 description:Similar to Midline 1 protein (Tripartite motif protein 18). (Os04t0512400-01)
Sequence	GGGGGCGCGCGCCTGCGCGCCTCTCTCCCGCAGTCCCGCCCGCCCGCGCGCGCGCGCGGC GCTCGAAACAGGCAATCGCTTTCCCCATCCAAAACCAGTCCACCCTCGCGCCGCGGGGGA AAACCCCGAAAAATTTTCTTCTTCCCGCCGATGGCACGCCGGTTCAGACCCGCGCCCGCA CGCGGCGGCATCCAAACATTTTTTTTCCAGCCGCCGCCACCCCTTCCCTCCAATTTTCGA GCGTGGCCACGCGTATTTCAGTGGCTCCGGAGCTAGCTTAATTAGCAGTGCCCACAAGCC ACCGTCTCCGCAGTCCGCACACAGGTTCTTCAATCCTTTGAGAGAGAGCGAGAGCGAGAG CGAGACCGTGCGGCCGTGCAGGGATGGAGAGCTTCAGGAGGTTCCTGAACCCGCTGGTGC TCAACCTGCAGAAGATGGAGCTGGAGCTCACCTGCCCCGTCTGCCTGAAGTTGCTCAACG CGCCTACCATGCTGCCATGTTACCACACTTCCTGCAGCAAGTGTGCTACTACACGGACCA TGGACGGTTACAGCTGCGCGATTTGCAAATCAGCTTATCGTTCTCAAGACCTAAGGCCTG CCTCTCACCTCGAGGCAATAGTGAACATCCACAGGAGCCTAAGCTCTACAGTCAGCAGCA TGGTCACTCAGCAGGAGGCTCAAGCTGATATTCCTGTTGCAAAGACATCATTTCAAGGAA CTCCAGAATCGGGAAACAGAAATGGAGCAGAGAAATCTGATCAGGTGAAATCATACACCC CGGTTGCTTCTAAACTGGCATATAACCAGTCAACTGGGCTTGCATATGGAAATGTGGACG GCGTGAAAGAAAGAAATCCTGCATTGGAGACTAGAGGTGCGGCTGATGTGACTGCTATGC CCACAATTCTTGTGCAGAAGGGACCCTGCCGATCTCAATCTTCTGATGGCCCTAGGGATC TGGATTGCGACAGCAATGACCTTGAAGGAGAGCTGATAACAAGCAGATCATCTCCTCAAA GTGTCTTGAAAAGAGAACCAAATACAGCGAATGATGATAATAGAGAATTAAAAAGGCAAA AGTCCACTGATCAGGATGATAGACAACCAGCTGTTGCTGGTGCTTGGAAATGTGAATTTT GTCACTCTTCCAAAACCACTGAGAGTACTGGCCCTCTGTCCCATTATCTGCATGGTGAGC CATTAGAGGATAACCAAGCATGGAAACCAAACGTTTTACATGTTCATGAGAAGTGCATTG AATGGGCCCCTCAAGCGTTCTTTACTGGTGACATTGCAAATAACTTGGAGCCTGAGTTGG CCCGTGCTTCTAAGATCAAATGCAGTGTTTGTGGACTAAAAGGTGCAGCCCTTGGCTGCC TTGTCAAGAGCTGCCGCAAGAGCTTTCATGTTCCATGTGCCCATGGGATATCAGGCTGCC GATGGGATGATGAGAACTTTGTTATGCTGTGTCCTTCTCATTCCTCGAAGAAGTTGCCAT GTGAGAGATCAAAGTCAAAAAATAAGAAGACCAGCTTGCAGCGATCATCTTCCGATACAA TGCTTGATGACCTGAACTCACCATCTACAATCCATATGGATGGACTTTGGACTGCTTCAC CTTTTCTCACTAGTGAATGGGTTATATGTGGATCTGCTCTCTCTAGTCAGGAGAAGGAAA TCTTGGACCAGTTTGAGCACCAAACTGGCATCACTGTAACTAACGGTTGGAGGTCGAATG TGACTCATGTGATTGCTAATACGGATGAATGTGGGGCATGTGCCAGGACACTCAAGGTTC TCATGGCCATACTAGCTGGGAAATGGGTTCTGAATATAAACTGGCTGAAAGCTTGTATGG AGGCTAAAGAACCAGTCCCAGAAGAGCCTTATGAGATCAGTTCTGATGTTCATGGCTCCT TTGATGGCCCTCGCATGGGAAGACTACGAGCAATGCAAAATGCACCACATCTGTTTGCAG GATTGACCTTTTACTTCAGTGGCCATTTCATGCCCAATTACAAGGTTCACCTTGAAGATT TGATCACTGCAGCTGGGGGATCAATCTTGGACAAGGCTGATCTCTCTAGCACATCCTTGA TAATTTACAGCATGGAGCCACCACAAGGAAGTGATCCTGATACCCTTAATGAGGTCATCA GAAAGAGGAAGGCTGAGGCTGAAGAATTGGCGGCAACGATTGGCTCCAGGGCTGTTCCTC ATACATGTGTTCTGGATTCTATTGCATCATGCACAGTGCAATTGACCATGTGATGCTGTA TCTTAGGTTAGGAGTTAGGATGTTACTGATATGTTCTTGAGTGAAAATATCTTCTAGATG TTGTAAGTTGTAACGTGAGCAAGCAATTTAATTCAAATAATATTGATATGTCTCTTTCC