Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0510500-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:25543329:25548790:1 gene:Os04g0510500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0157K09-H0214G12.10 protein. (Os04t0510500-01)
Sequence

ATGCGCGGCATGGGGGGGCGGTACCACATGGAGATGCCCACCGGGATGAGGGAGCTGGAC
CGCGTGCAGCAGCAGATCGCCAGCCACCCCTACGCCTTCGAGGTGTGCTCCTACTTCTTG
CAGGGGTACTACAACGTGCTCGCGAACAGCCCGGAGCTGGCGTGCCAATTCTACACGGAT
TACAGCACCGCCGTGAGGCTGGACTGCCAGACGATGAAATCCTCGTTCGGGGAGACTGTT
GAGGAAATCAATGACATGATCATATCCATGAATGTACACAAGATTGAGGTTAAGACAGCT
AATTTCGTGCAGTCATGGGGTGGGGCTCTCCAGATGTTGGTTACTGGCCTAGTGCAATTA
AAGGACTACCCTGTTCGCAAGAGATTTGCTCAGACTATGCTTCTTGCTCCTCAGGATAAT
GGATATTATGTATTCAGTGACATCTTTAAGCTTATCTGTGATGAATATGATTACTATGAA
GGGGCTGATTACAGTCACACTGACAACATTCTCCAGATGGATGCTCATAATACCATGACT
GAAACAGCGTCTGATTGTATGCCTGAAGAACTTGAGGCAAAGGAAGCTTTAGCTCCTGCT
GATATTGAGGAAAGGGGTCCTGCTTTTATGCCTGAAAATCATGAAGTTCAGCAGCAAGAT
CCTTTGGAATATGGGGTTGTGATCGACGATGATTCTCCTTCTGAAGAGCTTACTCCTTCG
TTCCCCAGTTCTACTGACAGTAAACAGGATGCACCTCTTGGCCCCATTGTCCATCCTTCT
GTAACTACCCCTGAGGAAGAGCCTATGGGAGAACCAGCCAAACAAACATACGCTTCAGTG
CTGCGAACAAAAGGACACCCTAGCCATCAGGCTATTCACTCCATTCCTCTCAACAAGGCC
ACGGCAAGTAGTGTGGAGTCACAACTGAATGGACATATGACTAAGCAGGTGCAGCCTGTG
CATGAAAAAGCCAACCTGGACACCCGTTATGATGCTAGCGGCCCTGAGGATGAAGAAGAG
TTTTTGTCAGTTTATATCGGGAACCTTTCTCCATCTACTTCAGTCTTTGATCTTGAGAAG
GTATTCCAGGCTTTTGGAAGAATTAAACCTGACGGGGTTGCTATACGGAGCCGCAAGGAG
GCTGGAATTTTCTTTGGCTTTGTTGAGTACGAAGACATGTCTGGTATCCATAATGCTTTG
AGGGCATCTCCAATAGAGCTGAATGGCCGCTTAATACATGTTGAAGAGAGGAGGCAAATC
TATCGGGGAGGTGGAGCAAGACGGGGGAGAGGAAGACCTGCTGACTTCTCTAGGGGTCAA
TCGGGTGGGCGGTATGATGGGGATTATGCTACTCGGTCAAAGGGAAATGGGTACCAAAGA
AGGGTTTGA

Peptide Sequence

PEP ID

Os04t0510500-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:25543329:25548790:1 gene:Os04g0510500 transcript:Os04t0510500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0157K09-H0214G12.10 protein. (Os04t0510500-01)
Sequence

MRGMGGRYHMEMPTGMRELDRVQQQIASHPYAFEVCSYFLQGYYNVLANSPELACQFYTD
YSTAVRLDCQTMKSSFGETVEEINDMIISMNVHKIEVKTANFVQSWGGALQMLVTGLVQL
KDYPVRKRFAQTMLLAPQDNGYYVFSDIFKLICDEYDYYEGADYSHTDNILQMDAHNTMT
ETASDCMPEELEAKEALAPADIEERGPAFMPENHEVQQQDPLEYGVVIDDDSPSEELTPS
FPSSTDSKQDAPLGPIVHPSVTTPEEEPMGEPAKQTYASVLRTKGHPSHQAIHSIPLNKA
TASSVESQLNGHMTKQVQPVHEKANLDTRYDASGPEDEEEFLSVYIGNLSPSTSVFDLEK
VFQAFGRIKPDGVAIRSRKEAGIFFGFVEYEDMSGIHNALRASPIELNGRLIHVEERRQI
YRGGGARRGRGRPADFSRGQSGGRYDGDYATRSKGNGYQRRV

Transcript Sequence

Transcript ID

Os04t0510500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:25543329:25548790:1 gene:Os04g0510500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0157K09-H0214G12.10 protein. (Os04t0510500-01)
Sequence

AGTGAGAGGAAGAAGAGCCATTTTAAAACCTTCCCCCTTCTCCCTCCCCCGATCCTCCTC
CGCCCCCACGAATCCCCATCCCGCATTCGCCTCCGCCCCCCCCGGCGCGAGGAGCGGCGG
CGGCGGCGAGCCACGAACCCTAGCCGTCTCCTTCGCCGTCCCTCTCTCTCCAGCCGTTGC
GGGAGGAGGAGGAGGAGGCGCGGTTGCTGTTGGTGGCGGCTGTCGTCCCTGACGCGGAGT
TCTCTCGCTAGGGTTTTTTTTTTGTGTGTGTGTGTGGGGGGGGGGGGGGGGATGCGCGGC
ATGGGGGGGCGGTACCACATGGAGATGCCCACCGGGATGAGGGAGCTGGACCGCGTGCAG
CAGCAGATCGCCAGCCACCCCTACGCCTTCGAGGTGTGCTCCTACTTCTTGCAGGGGTAC
TACAACGTGCTCGCGAACAGCCCGGAGCTGGCGTGCCAATTCTACACGGATTACAGCACC
GCCGTGAGGCTGGACTGCCAGACGATGAAATCCTCGTTCGGGGAGACTGTTGAGGAAATC
AATGACATGATCATATCCATGAATGTACACAAGATTGAGGTTAAGACAGCTAATTTCGTG
CAGTCATGGGGTGGGGCTCTCCAGATGTTGGTTACTGGCCTAGTGCAATTAAAGGACTAC
CCTGTTCGCAAGAGATTTGCTCAGACTATGCTTCTTGCTCCTCAGGATAATGGATATTAT
GTATTCAGTGACATCTTTAAGCTTATCTGTGATGAATATGATTACTATGAAGGGGCTGAT
TACAGTCACACTGACAACATTCTCCAGATGGATGCTCATAATACCATGACTGAAACAGCG
TCTGATTGTATGCCTGAAGAACTTGAGGCAAAGGAAGCTTTAGCTCCTGCTGATATTGAG
GAAAGGGGTCCTGCTTTTATGCCTGAAAATCATGAAGTTCAGCAGCAAGATCCTTTGGAA
TATGGGGTTGTGATCGACGATGATTCTCCTTCTGAAGAGCTTACTCCTTCGTTCCCCAGT
TCTACTGACAGTAAACAGGATGCACCTCTTGGCCCCATTGTCCATCCTTCTGTAACTACC
CCTGAGGAAGAGCCTATGGGAGAACCAGCCAAACAAACATACGCTTCAGTGCTGCGAACA
AAAGGACACCCTAGCCATCAGGCTATTCACTCCATTCCTCTCAACAAGGCCACGGCAAGT
AGTGTGGAGTCACAACTGAATGGACATATGACTAAGCAGGTGCAGCCTGTGCATGAAAAA
GCCAACCTGGACACCCGTTATGATGCTAGCGGCCCTGAGGATGAAGAAGAGTTTTTGTCA
GTTTATATCGGGAACCTTTCTCCATCTACTTCAGTCTTTGATCTTGAGAAGGTATTCCAG
GCTTTTGGAAGAATTAAACCTGACGGGGTTGCTATACGGAGCCGCAAGGAGGCTGGAATT
TTCTTTGGCTTTGTTGAGTACGAAGACATGTCTGGTATCCATAATGCTTTGAGGGCATCT
CCAATAGAGCTGAATGGCCGCTTAATACATGTTGAAGAGAGGAGGCAAATCTATCGGGGA
GGTGGAGCAAGACGGGGGAGAGGAAGACCTGCTGACTTCTCTAGGGGTCAATCGGGTGGG
CGGTATGATGGGGATTATGCTACTCGGTCAAAGGGAAATGGGTACCAAAGAAGGGTTTGA
CGCCAGTACGATGGCTAAAGTCAAATTTCTCACCTGCTCTGCTGGTGAATGGTTGTACCC
CCTTGGTGATCTCGACATGGTGCGGTCCGGCCATATTTTTGTCACAACAAAGCGTAATAT
TAGGTGGTAGTCATTTTTGGATGGGCATCTGTTACCATTTTGTTGCTGGTTTTTGCCGTC
GTTTGGTCAGAACAAAACCTCAGCTGCATCGACCTGGAAAGATTTCATAATGTTATCGCT
GAATTGGTGTCCGTTGAGAACACCATTGAAAAGTTCTAGTCTCAGTGATATGTTTTAGG