Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0508800-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:25424202:25429268:-1 gene:Os04g0508800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Similar to Retroelement pol polyprotein-like. (Os04t0508800-01)
Sequence	ATGGAGGACGCGTGGAGGAAGGCGAAGAGGGCGCTGGGGCTCGGCCTGTGCGTGCACGTG CCCGAGGCGGAGGAGGGGGAGAGGGAGGACTGCTCGAGCGAGCGGCGGAGGCGGCTGCCG GCGGCGGCGAGCGGCGCGCGGTGCCGGGGCGAGGCCGCGGTGACGGTGGGGCCGGAGTCG GTGCCGGCGCCGTCGGACGTTCCGGTGCCGCTGCCGCTCCCCGGCGTGGTGCGGAGGTCC AAGTCGGGGAGCAGCCGATCCTCCTCTAAGAGGAAATGTGCAATATGCTTTGACTCCATG CGGCATGGGAATGGTCAAGCCCTATTCACAGCTGAATGTTCTCATATGTTCCATTTTCAC TGCATCTCATCTAATGTGAAACATGGGAATTATTTCTGCCCAATTTGTCGGGCAAAGTGG AAAGAGATACCCTTCAATCGATCGCTATCTTCTAACATTCCGCATGGAAGAATTGGAGTT AGCCGAGCTCGATTGACCCAACAAGATGCCAATATGGCTCTTCTCCACCAAGTTCCAAAC CATCATCAGCGAGTTCGTCGCCCACATACTTCTGAGCCAGCAGACTTCAATGATGATGAA CCTTTGCAGCAGCCAGAAGTTTTTGACAATCTTAATGTTCGATCTACTAAGACTGCAGAG ATAAACACATATCCAGAATTCTCAACCATACCGCAGTCCTCATCTAAAGATGATTTTGCT ATTCTGATCCATCTGAAGGCTCCTAGTGCTAACCCAGACCAGGGCACAGGTAAATTGGCG AATGAAAGCTCAGCTGGATCTTCAAGAAACCGTGCTCCGGTTGATCTCGTTACTGTGCTT GATGTTAGTGGCAGCATGGCAGGCACCAAACTAGCGCTCCTAAAGCGAGCAATGGGTTTT GTTGTTCAGCACCTTGGACCAAGCGATCGTCTTTCTGTTATTGCTTTCTCATCTAGTGCC AGAAGACTGTTCCACCTTCAGCGAATATCACATCATGGCAGGCAGCAGGCATTGCAGGCA ATTAACTCACTTGGTGCTAGCGGCGGTACAAACATTGCTGATGCACTGAAGAAAGCTATG AAGGTGATTGAAGACCGCAGTTACAAGAATTCAGTGTGCAGCATCATTCTTCTGTCGGAC GGCCAAGATACATACAACATTTCCTCAAGTGTTCAGGGGGCTTCACCAGATTACAAGTCA CTTGTCCCATCTTCCATTATAAATGATGCTCGCCATACGGTGCCTCTTCATGCCTTCGGA TTTGGAGCAGACCATGACTCGGATTCCTTGCACTCAATTGCTCAAGCTTCTGGTGGCACC TTTTCCTTTATCGAGGATGAAGGTGTAATGCAAGATGCATTTGCTCAATGCATTGGTGGG CTTCTTAGCATTGTCATCCAAGAGATGCGAGTTAGCATGGAATGTGTTCATCCTGGTGTT CAACTTTCTTCCATCAAATCTGGTAGCTACCCAAGTAAGGTGGCAAGAGATGGACGAAAC GGTTCCGTCGACATTGGTCACCTGTATGCTGATGAGGAGAGAGACATCTTACTGTCCGTG AACATCCCACAATCTCGTCATCAGACCTCAGCACTGAAGGTTTCTTGTGCCTACAGAGAT CCGGTGACAGGTGAGACAATCAAGATTCAAGGTGACGAGGTGAAGATCAACCGGCCGACA ACATCCAACATATCTGAGCATGTGTCCATTGAGGTTGACCGCGAGAGGAACCGCATACAA GCTGCTGAATCCATAGAGTGTGCAAGGGCTGCTGCCGAGAAGGGTGCTCTCTCTGAGGCC GTGGCCATTCTTGAGGATTGCCGGAGGACACTGTCACAGTCATTCGCAAGCCGGAGCGGT GACCGTCTGTCGCTGTCCCTCGACGCGGAGCTGCGAGAGATGCAGGAGAGGATGGCAAAT CGCCAGCTCTACGAGTCTTCAGGGAGGGCTTACATGCTGTCCGGGCTGAGCTCACACTCG TGGCAGAGGGCAACAGCACGAGGTGACTCGACGGACAGCAGCACCGTCATCTACTCCTAC CAGACGCCATCCATGGTTGAGATGCTACAGCACTCCCAGAACCATCTCCCTTCGCCTCAG GGCCGGCAAAGGCCACGGCCCCGGTGA

Peptide Sequence

PEP ID	Os04t0508800-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:25424202:25429268:-1 gene:Os04g0508800 transcript:Os04t0508800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Similar to Retroelement pol polyprotein-like. (Os04t0508800-01)
Sequence	MEDAWRKAKRALGLGLCVHVPEAEEGEREDCSSERRRRLPAAASGARCRGEAAVTVGPES VPAPSDVPVPLPLPGVVRRSKSGSSRSSSKRKCAICFDSMRHGNGQALFTAECSHMFHFH CISSNVKHGNYFCPICRAKWKEIPFNRSLSSNIPHGRIGVSRARLTQQDANMALLHQVPN HHQRVRRPHTSEPADFNDDEPLQQPEVFDNLNVRSTKTAEINTYPEFSTIPQSSSKDDFA ILIHLKAPSANPDQGTGKLANESSAGSSRNRAPVDLVTVLDVSGSMAGTKLALLKRAMGF VVQHLGPSDRLSVIAFSSSARRLFHLQRISHHGRQQALQAINSLGASGGTNIADALKKAM KVIEDRSYKNSVCSIILLSDGQDTYNISSSVQGASPDYKSLVPSSIINDARHTVPLHAFG FGADHDSDSLHSIAQASGGTFSFIEDEGVMQDAFAQCIGGLLSIVIQEMRVSMECVHPGV QLSSIKSGSYPSKVARDGRNGSVDIGHLYADEERDILLSVNIPQSRHQTSALKVSCAYRD PVTGETIKIQGDEVKINRPTTSNISEHVSIEVDRERNRIQAAESIECARAAAEKGALSEA VAILEDCRRTLSQSFASRSGDRLSLSLDAELREMQERMANRQLYESSGRAYMLSGLSSHS WQRATARGDSTDSSTVIYSYQTPSMVEMLQHSQNHLPSPQGRQRPRPR

Transcript Sequence

Transcript ID	Os04t0508800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:25424202:25429268:-1 gene:Os04g0508800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Similar to Retroelement pol polyprotein-like. (Os04t0508800-01)
Sequence	TACGTTTCCTTCCCCTTCTTCTTCTCTCCCACGAGGTCAAACCAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAAGAGGAGATAGAAGCCGCAGCCAAACGCTCCACCTCCAATGCCG CGACGGCCACCGCTCCCGTCCAACGCCGCGCCGCCTCCTCTCCCCCTCATCCTCGCGCGC GGGTCGTAGGGCTTCGCCGCGTACGTCGCGCGTTTCTGGTGGTGGGTATAAGAGGAAGGG GAGAGTCGTCACAGGGAGGAGGGGGAGAAGGGGCGCGCGGCGGTGGCGATGGAGGACGCG TGGAGGAAGGCGAAGAGGGCGCTGGGGCTCGGCCTGTGCGTGCACGTGCCCGAGGCGGAG GAGGGGGAGAGGGAGGACTGCTCGAGCGAGCGGCGGAGGCGGCTGCCGGCGGCGGCGAGC GGCGCGCGGTGCCGGGGCGAGGCCGCGGTGACGGTGGGGCCGGAGTCGGTGCCGGCGCCG TCGGACGTTCCGGTGCCGCTGCCGCTCCCCGGCGTGGTGCGGAGGTCCAAGTCGGGGAGC AGCCGATCCTCCTCTAAGAGGAAATGTGCAATATGCTTTGACTCCATGCGGCATGGGAAT GGTCAAGCCCTATTCACAGCTGAATGTTCTCATATGTTCCATTTTCACTGCATCTCATCT AATGTGAAACATGGGAATTATTTCTGCCCAATTTGTCGGGCAAAGTGGAAAGAGATACCC TTCAATCGATCGCTATCTTCTAACATTCCGCATGGAAGAATTGGAGTTAGCCGAGCTCGA TTGACCCAACAAGATGCCAATATGGCTCTTCTCCACCAAGTTCCAAACCATCATCAGCGA GTTCGTCGCCCACATACTTCTGAGCCAGCAGACTTCAATGATGATGAACCTTTGCAGCAG CCAGAAGTTTTTGACAATCTTAATGTTCGATCTACTAAGACTGCAGAGATAAACACATAT CCAGAATTCTCAACCATACCGCAGTCCTCATCTAAAGATGATTTTGCTATTCTGATCCAT CTGAAGGCTCCTAGTGCTAACCCAGACCAGGGCACAGGTAAATTGGCGAATGAAAGCTCA GCTGGATCTTCAAGAAACCGTGCTCCGGTTGATCTCGTTACTGTGCTTGATGTTAGTGGC AGCATGGCAGGCACCAAACTAGCGCTCCTAAAGCGAGCAATGGGTTTTGTTGTTCAGCAC CTTGGACCAAGCGATCGTCTTTCTGTTATTGCTTTCTCATCTAGTGCCAGAAGACTGTTC CACCTTCAGCGAATATCACATCATGGCAGGCAGCAGGCATTGCAGGCAATTAACTCACTT GGTGCTAGCGGCGGTACAAACATTGCTGATGCACTGAAGAAAGCTATGAAGGTGATTGAA GACCGCAGTTACAAGAATTCAGTGTGCAGCATCATTCTTCTGTCGGACGGCCAAGATACA TACAACATTTCCTCAAGTGTTCAGGGGGCTTCACCAGATTACAAGTCACTTGTCCCATCT TCCATTATAAATGATGCTCGCCATACGGTGCCTCTTCATGCCTTCGGATTTGGAGCAGAC CATGACTCGGATTCCTTGCACTCAATTGCTCAAGCTTCTGGTGGCACCTTTTCCTTTATC GAGGATGAAGGTGTAATGCAAGATGCATTTGCTCAATGCATTGGTGGGCTTCTTAGCATT GTCATCCAAGAGATGCGAGTTAGCATGGAATGTGTTCATCCTGGTGTTCAACTTTCTTCC ATCAAATCTGGTAGCTACCCAAGTAAGGTGGCAAGAGATGGACGAAACGGTTCCGTCGAC ATTGGTCACCTGTATGCTGATGAGGAGAGAGACATCTTACTGTCCGTGAACATCCCACAA TCTCGTCATCAGACCTCAGCACTGAAGGTTTCTTGTGCCTACAGAGATCCGGTGACAGGT GAGACAATCAAGATTCAAGGTGACGAGGTGAAGATCAACCGGCCGACAACATCCAACATA TCTGAGCATGTGTCCATTGAGGTTGACCGCGAGAGGAACCGCATACAAGCTGCTGAATCC ATAGAGTGTGCAAGGGCTGCTGCCGAGAAGGGTGCTCTCTCTGAGGCCGTGGCCATTCTT GAGGATTGCCGGAGGACACTGTCACAGTCATTCGCAAGCCGGAGCGGTGACCGTCTGTCG CTGTCCCTCGACGCGGAGCTGCGAGAGATGCAGGAGAGGATGGCAAATCGCCAGCTCTAC GAGTCTTCAGGGAGGGCTTACATGCTGTCCGGGCTGAGCTCACACTCGTGGCAGAGGGCA ACAGCACGAGGTGACTCGACGGACAGCAGCACCGTCATCTACTCCTACCAGACGCCATCC ATGGTTGAGATGCTACAGCACTCCCAGAACCATCTCCCTTCGCCTCAGGGCCGGCAAAGG CCACGGCCCCGGTGATCGGGCAAGCCCCCCGGTGACGGCGAGGTAGCTCACCGCCGGCTG ATCTTGGCAATTTCCAAAAGCTCCGGCGAGGAGACCACGGTGAAGCACTCTGAAGCATTC ATCGTGTTAATTAGCTCTCGTAGTTGTTAGCTTGATTGTTGGTACATAGTACCTGCCGAT TCTTCTTGCTTAATTATTTGATTTGAGGCTTTGAGCCGC