Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0507400-00
CDS Infomation

cds chromosome:IRGSP-1.0:4:25346878:25348347:-1 gene:Os04g0507400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0157A06.5 protein. (Os04t0507400-00)
Sequence

ATGGCGGCGTCATCGTCCCTGGCTTTCACGGCGCGCCGAGGCGACCCGGAGCTCGTCGCG
CCGGCCGGGCCGACGCCGCGCGGGCTCCGGCGGCTCTCCGACATCGACGACCAGCGCAGC
TTCCGGTTCTACCGCTCCATCATCTACTTCTACCGGTCCGGCGGCGGCGACCCGGCCAGG
GTCATCCGCGGCGCGCTTGCGGCGGCGCTCGTGCACTACTACCCGATCGCCGGGAGGATC
CGGGAGCTTCCCGGCGGGAAGCTCGTGGTGGACTGCACCGGCGAGGGGGTCTCGTTCGTC
GAGGCCGACGCCGACGTCTCGCTGGAGGAGTTCGGTGACTCGCTGTGCCCGCCGATCCCT
TGCGCCGGCGAGCTCCTGACCCTGCCGGAGAGCAACTCCGCCGTCGTCACCGACCGACCA
CTACTCTATGTGCAGGTGACGAGGCTGAGGTGTGGCGGATTCGTGTTCGGCACCCAGATC
TGCCACAACCTCGTCGACGCGGCGGGGATCACGCAGTTCTGGCAGGCCGTCGGCGAGCTC
GCGCAGGGCGCGGCGGCGCCCAGCGTCCGGCCGGTGTGGGCGAGGGAGCTCCTCGACGCG
CGCCACCCGCCGCGCCCGGCGTACGACCACCCCGAGTACGAGCCGGCGTCCGACGAGGCC
AGCGACAAGCTCCGTCCGGGCGACGAGCTCGTGCACCGCAGGTTCCTCTTCGGCCCCGAC
GACGTCGCCGCGCTGCGCGGCCAGCTCCCCGCGCGCCTCGGGCCCCGGTGCTCGCGCTTC
CTTCTCCTCTCCGCGTTCACCTGGCGCTGCCGCACCGCCGCGCTCGGGTACGCGCCCGGC
GACGAGGTGCGGTTCATGTTCGTCGTGAACGGCCGCGGCCGCGGCCACGGCGGGAGGCCG
CTGCCCGAGGGGTTCTACGGGAACGCGCTCACGTTCGGCGTGGCGCGTACGACGGCCGGC
GAGCTCTGCTCGGGCCCGCTGTCCCGCGCCGTGGAGCTGATCGCTGCCGCGAGGGCGCGG
ACCATGGCCGACGGCTACGCGCAGTCTGCGGCCGACGCGGTGGTGCTCCGCGGGCGGCGG
CGGTTCACGACGGCGCGGACGTACCTGGTGACCGACCTGACGAAGTCGCCGCTGCACGAG
GTGGACCTCGGGTGGGGGCGGCCGCTGTTCGGCGGGCCGGCCACGACGACGCTGGCCACG
TTCCACATGCCCGCCCGCGGCGGCGGGATCGCCGTGCCGATGTGCCTGCCGCCGCGCGCC
ATGGAGAGGTTCGCGGGCGCCGTGCGTGCGGGGCTCGCGGCGGGCGTTCCCCGTGCGGCG
GAGGAGGCCGCCGCTCTGTCGAAGATGTAG

Peptide Sequence

PEP ID

Os04t0507400-00
PEP Infomation

pep chromosome:IRGSP-1.0:4:25346878:25348347:-1 gene:Os04g0507400 transcript:Os04t0507400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0157A06.5 protein. (Os04t0507400-00)
Sequence

MAASSSLAFTARRGDPELVAPAGPTPRGLRRLSDIDDQRSFRFYRSIIYFYRSGGGDPAR
VIRGALAAALVHYYPIAGRIRELPGGKLVVDCTGEGVSFVEADADVSLEEFGDSLCPPIP
CAGELLTLPESNSAVVTDRPLLYVQVTRLRCGGFVFGTQICHNLVDAAGITQFWQAVGEL
AQGAAAPSVRPVWARELLDARHPPRPAYDHPEYEPASDEASDKLRPGDELVHRRFLFGPD
DVAALRGQLPARLGPRCSRFLLLSAFTWRCRTAALGYAPGDEVRFMFVVNGRGRGHGGRP
LPEGFYGNALTFGVARTTAGELCSGPLSRAVELIAAARARTMADGYAQSAADAVVLRGRR
RFTTARTYLVTDLTKSPLHEVDLGWGRPLFGGPATTTLATFHMPARGGGIAVPMCLPPRA
MERFAGAVRAGLAAGVPRAAEEAAALSKM

Transcript Sequence

Transcript ID

Os04t0507400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:25346878:25348347:-1 gene:Os04g0507400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0157A06.5 protein. (Os04t0507400-00)
Sequence

GCTCCGGCGAACGTACGGCGATCGATCGATGGCGGCGTCATCGTCCCTGGCTTTCACGGC
GCGCCGAGGCGACCCGGAGCTCGTCGCGCCGGCCGGGCCGACGCCGCGCGGGCTCCGGCG
GCTCTCCGACATCGACGACCAGCGCAGCTTCCGGTTCTACCGCTCCATCATCTACTTCTA
CCGGTCCGGCGGCGGCGACCCGGCCAGGGTCATCCGCGGCGCGCTTGCGGCGGCGCTCGT
GCACTACTACCCGATCGCCGGGAGGATCCGGGAGCTTCCCGGCGGGAAGCTCGTGGTGGA
CTGCACCGGCGAGGGGGTCTCGTTCGTCGAGGCCGACGCCGACGTCTCGCTGGAGGAGTT
CGGTGACTCGCTGTGCCCGCCGATCCCTTGCGCCGGCGAGCTCCTGACCCTGCCGGAGAG
CAACTCCGCCGTCGTCACCGACCGACCACTACTCTATGTGCAGGTGACGAGGCTGAGGTG
TGGCGGATTCGTGTTCGGCACCCAGATCTGCCACAACCTCGTCGACGCGGCGGGGATCAC
GCAGTTCTGGCAGGCCGTCGGCGAGCTCGCGCAGGGCGCGGCGGCGCCCAGCGTCCGGCC
GGTGTGGGCGAGGGAGCTCCTCGACGCGCGCCACCCGCCGCGCCCGGCGTACGACCACCC
CGAGTACGAGCCGGCGTCCGACGAGGCCAGCGACAAGCTCCGTCCGGGCGACGAGCTCGT
GCACCGCAGGTTCCTCTTCGGCCCCGACGACGTCGCCGCGCTGCGCGGCCAGCTCCCCGC
GCGCCTCGGGCCCCGGTGCTCGCGCTTCCTTCTCCTCTCCGCGTTCACCTGGCGCTGCCG
CACCGCCGCGCTCGGGTACGCGCCCGGCGACGAGGTGCGGTTCATGTTCGTCGTGAACGG
CCGCGGCCGCGGCCACGGCGGGAGGCCGCTGCCCGAGGGGTTCTACGGGAACGCGCTCAC
GTTCGGCGTGGCGCGTACGACGGCCGGCGAGCTCTGCTCGGGCCCGCTGTCCCGCGCCGT
GGAGCTGATCGCTGCCGCGAGGGCGCGGACCATGGCCGACGGCTACGCGCAGTCTGCGGC
CGACGCGGTGGTGCTCCGCGGGCGGCGGCGGTTCACGACGGCGCGGACGTACCTGGTGAC
CGACCTGACGAAGTCGCCGCTGCACGAGGTGGACCTCGGGTGGGGGCGGCCGCTGTTCGG
CGGGCCGGCCACGACGACGCTGGCCACGTTCCACATGCCCGCCCGCGGCGGCGGGATCGC
CGTGCCGATGTGCCTGCCGCCGCGCGCCATGGAGAGGTTCGCGGGCGCCGTGCGTGCGGG
GCTCGCGGCGGGCGTTCCCCGTGCGGCGGAGGAGGCCGCCGCTCTGTCGAAGATGTAG