Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0504800-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:25194829:25201219:-1 gene:Os04g0504800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsPABPC3, PABPC3 description:Similar to Poly(A)-binding protein. (Os04t0504800-01);Similar to polyadenylate-binding protein 2. (Os04t0504800-02);Similar to polyadenylate-binding protein 2. (Os04t0504800-03)
Sequence	ATGGCGGCGCAAATGGCGGCGGTGGCGGTGAACGGGGGCTCTCCGGGGGCTGTCACCGCG GCGGCGGCGGCGGGAGGGGTCGGCGTCGCCGTGGGCCTCGGGGGCGGCGGGGCGCAGTCG CTGTACGTGGGCGACCTGGAGGCGTCGGTCACGGACTCGCAGCTGTACGAGCTCTTCAGC CAGGCGGGGCAGGTGATGTCGGTGCGCGTCTGCAGGGACATCAGCTCGCGCCGCTCGCTC GGCTACGCCTACGTCAACTTCAACAACCCCGTGGATGCTGCAAGAGCACTGGAGCTGCTC AACTTTGCTCCTCTGAATGGCAAACCCATTCGGGTAATGTACTCAAACCGTGACCCAAGC AGTCGCAGAAGTGGATCTGCTAACATTTTCATCAAGAACCTTGACAAAGCAATAGACCAC AAAACTCTCCATGATACCTTTTCTGCATTTGGTAACATTCTCTCCTGTAAGGTTGCCACA GATGAAATGGGCCAATCCAAAGGCTTTGGTTTTGTTCAGTATGACAAGGGAGAGGCTGCC CAATCTGCAATAAAAAGTCTAAATGGGATGCTGATCAATGATAAGCCTGTTTATGTTGGA CCTTTTCTCCGCAAGCAAGAGAGAGAGAATTCTGTTGACAAGACAAAGTTTAACAATGTT TTTGTGAAAAATTTGTCTGAGTCCACCACAAAGGAGGATCTAGTCAAAATTTTTGGTGCC TATGGGAACATCACAAGTGCTGTTATCATGGTTGGCATGGATGGTAAATCAAGGTGCTTT GGTTTCATCAATTTTAAGAGCCCAGATGATGCTGCTCGTGCTGTTGAGGAACTTAATGGA AAGAAAATTAATGACAAAGAATGGTATGTTGGAAGAGCTCAGAAGAAGTCAGAAAGAGAG ATTGAATTGAAGAGAAGATTTGAGCAAAGCATGAAAGATGCTGCTGACAAATATCAAGGA CTGAACTTATACATGAAGAATTTGGATGATAGCATTGGGGATGACCAGCTTTGTGAATTG TTCTCTAACTATGGCAAAATTACTTCATGCAAGATAATGCGTGATGCAAATGGTGTTAGC AAAGGGTCTGGATTTGTTGCATTTTCAACTCGTGAGGAAGCATCTCAAGCTTTAACTGAA ATGAATGGCAAAATGATATCTGGAAAGCCATTGTATGTCGCATTTGCACAACGTAAAGAA GACAGGAAGGCGATGTTGCAGGCACAATTTTCTCAGGTGCGCCCTGTACCGATGACACCT TCCATGGCTCCACGTCTTCCCATGTACCCTCCTATGGCTCCTCTTGGGCAGCAACTCTTC TACGGACAAGCTCCACCTGCTATCATGCCCCCACAGCCTGGATTTGGTTTCCAGCAACAG CTTGTTCCAGGCATGAGGCCTGGGGGTGCCCATATGCCAAATTACTTTGTTCCAGTTGTC CAACAAGGTCAACAGGGTCCACGTCCAGGTATCCGGCGTTCTGGTGCTGGTTCTGCCCAG GGACAGCAATCTGCTCAGCCATTTCAGCAACAGATGCTTCCAAGAGGACGTGTGTACCGT TACCCACCTGCGCATAACATGCCTGATGTTCCACCAATGCCGGGGGTTGCTGGTGGTATG ATTCAATCGTATGATATGGGAGGCTTCCCAGTACGAGATGCTGGTTTGTCACCTGCTCCA ATTGGAACGCTGACTTCTGCCCTTGCAAATGCTAATCCAGAACAGCAAAGAACGATACTT GGTGAAAGCCTGTATCCACTGGTTGAGCTTCTGGAACAGAACCATGCGGCCAAGGTCACC GGAATGCTTCTGGAGATGGATCAGACGGAGGTCCTGCATCTGCTCGAGTCTCCAGAGGCT CTGAAGTCCAAGGTTGCTGAGGCGATGGATGTCCTCCGCAATGTGGCCCAGCAGCACAAT GCGAACACCCCGACCAGTCAACTTGCTGCGCTGTCACTGGGCGACGCCATTATCTCCTAA

Peptide Sequence

PEP ID	Os04t0504800-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:25194829:25201219:-1 gene:Os04g0504800 transcript:Os04t0504800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsPABPC3, PABPC3 description:Similar to Poly(A)-binding protein. (Os04t0504800-01);Similar to polyadenylate-binding protein 2. (Os04t0504800-02);Similar to polyadenylate-binding protein 2. (Os04t0504800-03)
Sequence	MAAQMAAVAVNGGSPGAVTAAAAAGGVGVAVGLGGGGAQSLYVGDLEASVTDSQLYELFS QAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELLNFAPLNGKPIRVMYSNRDPS SRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAA QSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGA YGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSERE IELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVS KGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQVRPVPMTP SMAPRLPMYPPMAPLGQQLFYGQAPPAIMPPQPGFGFQQQLVPGMRPGGAHMPNYFVPVV QQGQQGPRPGIRRSGAGSAQGQQSAQPFQQQMLPRGRVYRYPPAHNMPDVPPMPGVAGGM IQSYDMGGFPVRDAGLSPAPIGTLTSALANANPEQQRTILGESLYPLVELLEQNHAAKVT GMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQHNANTPTSQLAALSLGDAIIS

Transcript Sequence

Transcript ID	Os04t0504800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:25194829:25201219:-1 gene:Os04g0504800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsPABPC3, PABPC3 description:Similar to Poly(A)-binding protein. (Os04t0504800-01);Similar to polyadenylate-binding protein 2. (Os04t0504800-02);Similar to polyadenylate-binding protein 2. (Os04t0504800-03)
Sequence	ACCGTTGAGAGAGTCTCGCCTCCGCCGCGTGCTCTCCGCCTACGGCCTCTTGTATCCCGC AACCAAAAACTACTCCCAAAAAAAAAAAATTTCTAGTATCACACCAAAAGAAAAAAGAGA AAAAAAATTTCCCCCAAAACTCCGCGAGATCTGCCCGTGCCGAGCTATATACCAATCCAT CAGCTAGGGTTTAGAGCAGATTTTTTTTTTTGTTTCGCGGAAAAAAATTGAAAAAGAGAG AAGGGTGAGGGAGCGAGGTCGAGGGATCGGTGGGCGATGGCGGCGCAAATGGCGGCGGTG GCGGTGAACGGGGGCTCTCCGGGGGCTGTCACCGCGGCGGCGGCGGCGGGAGGGGTCGGC GTCGCCGTGGGCCTCGGGGGCGGCGGGGCGCAGTCGCTGTACGTGGGCGACCTGGAGGCG TCGGTCACGGACTCGCAGCTGTACGAGCTCTTCAGCCAGGCGGGGCAGGTGATGTCGGTG CGCGTCTGCAGGGACATCAGCTCGCGCCGCTCGCTCGGCTACGCCTACGTCAACTTCAAC AACCCCGTGGATGCTGCAAGAGCACTGGAGCTGCTCAACTTTGCTCCTCTGAATGGCAAA CCCATTCGGGTAATGTACTCAAACCGTGACCCAAGCAGTCGCAGAAGTGGATCTGCTAAC ATTTTCATCAAGAACCTTGACAAAGCAATAGACCACAAAACTCTCCATGATACCTTTTCT GCATTTGGTAACATTCTCTCCTGTAAGGTTGCCACAGATGAAATGGGCCAATCCAAAGGC TTTGGTTTTGTTCAGTATGACAAGGGAGAGGCTGCCCAATCTGCAATAAAAAGTCTAAAT GGGATGCTGATCAATGATAAGCCTGTTTATGTTGGACCTTTTCTCCGCAAGCAAGAGAGA GAGAATTCTGTTGACAAGACAAAGTTTAACAATGTTTTTGTGAAAAATTTGTCTGAGTCC ACCACAAAGGAGGATCTAGTCAAAATTTTTGGTGCCTATGGGAACATCACAAGTGCTGTT ATCATGGTTGGCATGGATGGTAAATCAAGGTGCTTTGGTTTCATCAATTTTAAGAGCCCA GATGATGCTGCTCGTGCTGTTGAGGAACTTAATGGAAAGAAAATTAATGACAAAGAATGG TATGTTGGAAGAGCTCAGAAGAAGTCAGAAAGAGAGATTGAATTGAAGAGAAGATTTGAG CAAAGCATGAAAGATGCTGCTGACAAATATCAAGGACTGAACTTATACATGAAGAATTTG GATGATAGCATTGGGGATGACCAGCTTTGTGAATTGTTCTCTAACTATGGCAAAATTACT TCATGCAAGATAATGCGTGATGCAAATGGTGTTAGCAAAGGGTCTGGATTTGTTGCATTT TCAACTCGTGAGGAAGCATCTCAAGCTTTAACTGAAATGAATGGCAAAATGATATCTGGA AAGCCATTGTATGTCGCATTTGCACAACGTAAAGAAGACAGGAAGGCGATGTTGCAGGCA CAATTTTCTCAGGTGCGCCCTGTACCGATGACACCTTCCATGGCTCCACGTCTTCCCATG TACCCTCCTATGGCTCCTCTTGGGCAGCAACTCTTCTACGGACAAGCTCCACCTGCTATC ATGCCCCCACAGCCTGGATTTGGTTTCCAGCAACAGCTTGTTCCAGGCATGAGGCCTGGG GGTGCCCATATGCCAAATTACTTTGTTCCAGTTGTCCAACAAGGTCAACAGGGTCCACGT CCAGGTATCCGGCGTTCTGGTGCTGGTTCTGCCCAGGGACAGCAATCTGCTCAGCCATTT CAGCAACAGATGCTTCCAAGAGGACGTGTGTACCGTTACCCACCTGCGCATAACATGCCT GATGTTCCACCAATGCCGGGGGTTGCTGGTGGTATGATTCAATCGTATGATATGGGAGGC TTCCCAGTACGAGATGCTGGTTTGTCACCTGCTCCAATTGGAACGCTGACTTCTGCCCTT GCAAATGCTAATCCAGAACAGCAAAGAACGATACTTGGTGAAAGCCTGTATCCACTGGTT GAGCTTCTGGAACAGAACCATGCGGCCAAGGTCACCGGAATGCTTCTGGAGATGGATCAG ACGGAGGTCCTGCATCTGCTCGAGTCTCCAGAGGCTCTGAAGTCCAAGGTTGCTGAGGCG ATGGATGTCCTCCGCAATGTGGCCCAGCAGCACAATGCGAACACCCCGACCAGTCAACTT GCTGCGCTGTCACTGGGCGACGCCATTATCTCCTAATTTACAGTCGTAGCTATCTTTTTA GCTTGCAGTTGTGTGTGATCTTGCATGAGGTTATCGGCAACATGGCACTTTTTCCCTCGT ATGGTTTGACTTGAGTGGTTCGAGTTCCCGGGTTGGATGTTAGGCGTTATACTTCTCGGC CTGGTATCCTTGCCATTAAGGCCAGGTACTTGTTTCCAAGTTTGAGTATTATCCGGACCA TCCGTCACATACCTCTTATGCTTGATCACAATTTTTGCTGTTAATGATTGGTGAGAGAAA TGGTTGGATGTTAACGATTGCTGTT