Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0501200-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:25017254:25020545:1 gene:Os04g0501200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TagI description:Similar to H0311C03.4 protein. (Os04t0501200-01)
Sequence

ATGTCCGGGGCTAACGCGAGGGGGCGGCTCTCGCCGGCTTCCGGCGGCGGTGGAGACTCT
GAGCCGCGGTCTGCGGGGAGCAGGACGCGGTCGGTTTCCGCTACAAGGGGACGGAAGCCG
TCGCCGAGGCCTGGGAGGGATGCGGCGGCGGCGGCGGCGGAGGAGAAGAAGCCCGCCGCG
GTGCCCACATTGCTGCCCTCGCTCAGTGTGCCGGCAGGGATGCGCAGGCAGGAGCTGCTG
CTGCGCTCGGGGCTGTCGCTCGACGCGTCGTGCTCGTCGGACGCATCCACGGACTCGTTC
TGCAGCCGGGCGTCCACGGGGCGGATTGGGAGGCCGACGTTTGGGGCTAGGAAGAAGAAG
ACTCTCTGTCAGACTGATCACAAGATTGTTTCCATGCTGGAAAGGGAGGTTGGATTGGCT
TCTGCTAATGATGTGCCTGGTCTGAAGAGGAGGTGTTCATGGGTGACAGCTAATACTGAA
CCCTGTTATGCTGCATTTCATGACGAAGAATGGGGAGTTCCAGTTCATGATGACAAGGTG
TTGTTTGAGTTGCTGGTGCTCTCAGGTGCATTGGCTGAACTTACATGGCCAACAATTCTG
AACAAGAGACCTATATTCAGGGAGGTTTTCATGGATTTTGACCCTGTATTGGTCTCTAAA
CTAAGTGAAAAGAAGATTATTGCACCTGGAAGTCCTAGCAGTACCTTGTTATCTGAACAA
AAACTGCGTGGTGTCATTGAAAATGCACGCCAAATACTCAAGATTGTAGAGGAGTTTGGA
ACGTTTGATAAGTATTGTTGGAGCTTTGTGAACAACAAACCTATTTTGAGCAGATTCAGG
TATCCCCGCCAGGTTCCTGTCAAAACATCTAAAGCGGATGCGATAAGCAAAGATTTGGTT
CGCAGGGGGTTCCGTAGCGTAGGCCCAACAGTTGTCTACACGTTTATGCAAGTTTCAGGC
ATGACCAATGACCACTTGATCTCCTGCTACCGGTTTGCTGAATGCGCTGCTGCAGCAACT
GGTTCTAACACAACTGTTGGGAGCGAAACGAATTCAGACAGTAGCAATCGTGCCACGGAA
CAGCAGATGAATGGAACCAATGGACTAGCTGCTGATATTGCACGTACAATAGATGAACTT
AGCATTTCATAG

Peptide Sequence

PEP ID

Os04t0501200-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:25017254:25020545:1 gene:Os04g0501200 transcript:Os04t0501200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TagI description:Similar to H0311C03.4 protein. (Os04t0501200-01)
Sequence

MSGANARGRLSPASGGGGDSEPRSAGSRTRSVSATRGRKPSPRPGRDAAAAAAEEKKPAA
VPTLLPSLSVPAGMRRQELLLRSGLSLDASCSSDASTDSFCSRASTGRIGRPTFGARKKK
TLCQTDHKIVSMLEREVGLASANDVPGLKRRCSWVTANTEPCYAAFHDEEWGVPVHDDKV
LFELLVLSGALAELTWPTILNKRPIFREVFMDFDPVLVSKLSEKKIIAPGSPSSTLLSEQ
KLRGVIENARQILKIVEEFGTFDKYCWSFVNNKPILSRFRYPRQVPVKTSKADAISKDLV
RRGFRSVGPTVVYTFMQVSGMTNDHLISCYRFAECAAAATGSNTTVGSETNSDSSNRATE
QQMNGTNGLAADIARTIDELSIS

Transcript Sequence

Transcript ID

Os04t0501200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:25017254:25020545:1 gene:Os04g0501200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TagI description:Similar to H0311C03.4 protein. (Os04t0501200-01)
Sequence

GGACTCCACCTCGGCACCTCGCGTTCCCCTTCCCCCCTCACCTCGCCTAGGGTTTCGTCT
CGGCTCGCGCGCCGCGGCGCCATTGCTACAGCTCTGCTACATCTCTGGGTCGTGCGTCGC
TGATGATGCCCCCGAGGTTTTGTGATTAAGCTCTTGGTCTCGTCTCCGCGAGCTCAGCTC
AGAGTGGGAGGCTTTTTTTTGGGGGGGCGTTGCTTGGGGTATTATGGGTGGAGGCGGGCG
GCTGAGCTGTTCCTGGGCAATGCCGGGGAGGCCCGGTGCCGATTGCTAGGGTTTTGCTCG
TGGATTCGCGTGGGGAGGCGGGGATCGCTTGGAATGCGTGGGTTTCGTGCAATCTACTGC
TTGCTTTGACCCCCCAATTTGGTCTCGATTCATCAGGAGGGGGGGGGGGGGGGGGTTCTA
GGGAGGGTTGTGGGGAGGGGAGCTGTGGCCGCAATGTCCGGGGCTAACGCGAGGGGGCGG
CTCTCGCCGGCTTCCGGCGGCGGTGGAGACTCTGAGCCGCGGTCTGCGGGGAGCAGGACG
CGGTCGGTTTCCGCTACAAGGGGACGGAAGCCGTCGCCGAGGCCTGGGAGGGATGCGGCG
GCGGCGGCGGCGGAGGAGAAGAAGCCCGCCGCGGTGCCCACATTGCTGCCCTCGCTCAGT
GTGCCGGCAGGGATGCGCAGGCAGGAGCTGCTGCTGCGCTCGGGGCTGTCGCTCGACGCG
TCGTGCTCGTCGGACGCATCCACGGACTCGTTCTGCAGCCGGGCGTCCACGGGGCGGATT
GGGAGGCCGACGTTTGGGGCTAGGAAGAAGAAGACTCTCTGTCAGACTGATCACAAGATT
GTTTCCATGCTGGAAAGGGAGGTTGGATTGGCTTCTGCTAATGATGTGCCTGGTCTGAAG
AGGAGGTGTTCATGGGTGACAGCTAATACTGAACCCTGTTATGCTGCATTTCATGACGAA
GAATGGGGAGTTCCAGTTCATGATGACAAGGTGTTGTTTGAGTTGCTGGTGCTCTCAGGT
GCATTGGCTGAACTTACATGGCCAACAATTCTGAACAAGAGACCTATATTCAGGGAGGTT
TTCATGGATTTTGACCCTGTATTGGTCTCTAAACTAAGTGAAAAGAAGATTATTGCACCT
GGAAGTCCTAGCAGTACCTTGTTATCTGAACAAAAACTGCGTGGTGTCATTGAAAATGCA
CGCCAAATACTCAAGATTGTAGAGGAGTTTGGAACGTTTGATAAGTATTGTTGGAGCTTT
GTGAACAACAAACCTATTTTGAGCAGATTCAGGTATCCCCGCCAGGTTCCTGTCAAAACA
TCTAAAGCGGATGCGATAAGCAAAGATTTGGTTCGCAGGGGGTTCCGTAGCGTAGGCCCA
ACAGTTGTCTACACGTTTATGCAAGTTTCAGGCATGACCAATGACCACTTGATCTCCTGC
TACCGGTTTGCTGAATGCGCTGCTGCAGCAACTGGTTCTAACACAACTGTTGGGAGCGAA
ACGAATTCAGACAGTAGCAATCGTGCCACGGAACAGCAGATGAATGGAACCAATGGACTA
GCTGCTGATATTGCACGTACAATAGATGAACTTAGCATTTCATAGCGAATAGGGGGAAAT
GCTCAAATGATGTATAAGCATGTGTGTATTTTGTTTATCGTAGCGTTTAGGTGTGGTCTG
ATCGTTGTTACTTGTCACGTTGTAGCGTAGGACATTTTAGACTTTAGCATTTCAAGACAA
ATGAAACGGCGGCATGTAATGATGTATATTCTTTCTTTGTGATGCTTGTTTCCAAACCTG
CAGTACTGAGTTGGCATGTGAAGTTCACCCTC