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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0500900-00
CDS Infomation

cds chromosome:IRGSP-1.0:4:25003551:25006535:1 gene:Os04g0500900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:protein phosphatase 2C42, protein phosphatase 2C 42, protein phosphatase 67 description:Similar to H0311C03.1 protein. (Os04t0500900-00)
Sequence

ATGGAATTTAAGGATATTTTATTCCTATTATTATGTTTCAGCGAAGCAGACTCCGCTATG
GCTCAACCTCAACGTCCCCTCCAAGTTCCTGACATAACAAAGTCTACTCATTCTGGAGGG
AACACTGTACTTGCTTATGCTTCATCAGCTATGCAAGGATACCGTAGCACCATGGAAGAT
GCCCATGCGACTATTGAAAATCTTGATGCTCTCACTAACACGTCATTCTTTGGTGTTTAT
GATGGCCATGGAGGTTCTGCTGTAGCAAGGTATTGCGCAAATCACTTGCACAATAAGGTT
TTGGAGCAAGAAGATTTTAGCAGTAACCTTGCTAATGCATTGAGGCAATCCTTTTTCAGA
ATGGATGAGATGTTGAGAAATCAGGCGGCAAGCAAGGAATTAACTGAGTATGGTAGTGGC
AACGAGTATTGGAGAACAGCTGGGCGGTCTTGGCTCAGATGTGCTCCTTGTGTGCTGGGA
CCTGTCTATTGTGGACCATTAGCAGAAGGATGTACAGCATGTGTGGTTCTCATTAGAAAT
ACGCAGATCGTTGTTGGAAATGCTGGTGATGCTCGTTGTGTAATCTCAAGGAATGGTCAG
GCAATCGCTTTATCCAATGATCACAAACCAAATTTTCCGGAGGAAACTCAGAGAATAGTA
GCTGCAGGAGGTTCCGTATCTTTTTCTAGGGGTTCCCACCGTGTTAATAATGGAATTGCA
GTATCAAGAGCAATCGGGGATTTATCTTACAAGAACAACAAAAAGTTGCGTCCTGAACAA
CAATTGCTGACTTGTTCTCCTGAAATTCGAGCTGACCAATTAACTGATGATACCGAGTTT
CTTGTTATAGCATGTGATGGAGTCTGGTAA

Peptide Sequence

PEP ID

Os04t0500900-00
PEP Infomation

pep chromosome:IRGSP-1.0:4:25003551:25006535:1 gene:Os04g0500900 transcript:Os04t0500900-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:protein phosphatase 2C42, protein phosphatase 2C 42, protein phosphatase 67 description:Similar to H0311C03.1 protein. (Os04t0500900-00)
Sequence

MEFKDILFLLLCFSEADSAMAQPQRPLQVPDITKSTHSGGNTVLAYASSAMQGYRSTMED
AHATIENLDALTNTSFFGVYDGHGGSAVARYCANHLHNKVLEQEDFSSNLANALRQSFFR
MDEMLRNQAASKELTEYGSGNEYWRTAGRSWLRCAPCVLGPVYCGPLAEGCTACVVLIRN
TQIVVGNAGDARCVISRNGQAIALSNDHKPNFPEETQRIVAAGGSVSFSRGSHRVNNGIA
VSRAIGDLSYKNNKKLRPEQQLLTCSPEIRADQLTDDTEFLVIACDGVW

Transcript Sequence

Transcript ID

Os04t0500900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:25003551:25006535:1 gene:Os04g0500900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:protein phosphatase 2C42, protein phosphatase 2C 42, protein phosphatase 67 description:Similar to H0311C03.1 protein. (Os04t0500900-00)
Sequence

ATGGAATTTAAGGATATTTTATTCCTATTATTATGTTTCAGCGAAGCAGACTCCGCTATG
GCTCAACCTCAACGTCCCCTCCAAGTTCCTGACATAACAAAGTCTACTCATTCTGGAGGG
AACACTGTACTTGCTTATGCTTCATCAGCTATGCAAGGATACCGTAGCACCATGGAAGAT
GCCCATGCGACTATTGAAAATCTTGATGCTCTCACTAACACGTCATTCTTTGGTGTTTAT
GATGGCCATGGAGGTTCTGCTGTAGCAAGGTATTGCGCAAATCACTTGCACAATAAGGTT
TTGGAGCAAGAAGATTTTAGCAGTAACCTTGCTAATGCATTGAGGCAATCCTTTTTCAGA
ATGGATGAGATGTTGAGAAATCAGGCGGCAAGCAAGGAATTAACTGAGTATGGTAGTGGC
AACGAGTATTGGAGAACAGCTGGGCGGTCTTGGCTCAGATGTGCTCCTTGTGTGCTGGGA
CCTGTCTATTGTGGACCATTAGCAGAAGGATGTACAGCATGTGTGGTTCTCATTAGAAAT
ACGCAGATCGTTGTTGGAAATGCTGGTGATGCTCGTTGTGTAATCTCAAGGAATGGTCAG
GCAATCGCTTTATCCAATGATCACAAACCAAATTTTCCGGAGGAAACTCAGAGAATAGTA
GCTGCAGGAGGTTCCGTATCTTTTTCTAGGGGTTCCCACCGTGTTAATAATGGAATTGCA
GTATCAAGAGCAATCGGGGATTTATCTTACAAGAACAACAAAAAGTTGCGTCCTGAACAA
CAATTGCTGACTTGTTCTCCTGAAATTCGAGCTGACCAATTAACTGATGATACCGAGTTT
CTTGTTATAGCATGTGATGGAGTCTGGTAAGTCCTCAGCTAAAAGTATCAGAAACAGTTC
TTATATTTTTCTCCCATGGGGTGGAGCTGTCGGTAATCTGCGAGAGCCTTCTTCAGGAGG
CCATTACACGAGACCCACCATCGACGGACAACATGAGCGTCATACTGGTTCGGTTCCTGC
ACCCAG