Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0497900-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:24894293:24896500:1 gene:Os04g0497900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SNOW-WHITE LEAF1, SNOW-WHITE LEAF 1 description:Unknown protein with the N-terminal chloroplast transit peptide, Formation of thylakoid membranes (Os04t0497900-01)
Sequence	ATGGCGTCCGCGTCCGGCTCGGCCACCCTCCTCTACCCCAAAACCCCGCAATCCCCTCGC CTCCTCCGCCGCAACCCCCACTACTCCGGCCTCCGCCTCGTCCACCCCCTCCTCCTCGCC ACCGTCTCCCCGCCGCCTCCCGCCGCCCTCCGACGCAGGCGCAACTCCACCACCATCCAT GCATCCTCCTCCTCCGCCGCCGCCGGCGCCGCCGCCGCTTCCTTCCCCGCCTCCTCGACC CCGCCTCCGCGCCCGCCGCGGACGGACCCGCCCGAGGAACACCCCACCGTGGCCCGCGCA GGCCGCAGCAAGAAGCACAGGAAGCCCTCGGGGGGACGCATCGAGGGCGGCGGCGACGTG CGGCGCGAGGCCAAGTCCCGCGCCCGCATCCGCAGCCGCCGCCTCGGCGAGAACGCCTTC TACCGGAGGAAGCGGCGCGCCGCCAAGGAGAACCAGGCCGACGCCTTCACCGACGCCGAG CTGGAGATGATCGGCCTCGGCTACGACCGCTCCGTCCGCTTCATGGACGGGCCCGACGAC CCGCGCCTCCGCCACCGGCACGACTGGTACAGGTTCGGCCGCTACGGGCCCTACTCCTGG CGCGGCATCGTCGTCGGCCCGCCCATCCGCGGCCGCTTCTCCGACGACCGCGTCTCCCTC ATGTCCGAGGTCTCCGACCACGACGAGTGGGACCGCGTCGAGCAGTTCGACATGTCCAAC CAGTTCTCCAACCGCCTCAACGAGCTCGACGCCGCCGTCGGCTTCCGGTACTACTGGGTC TTCGTGAGACACCCTAGGTGGCGCCCCGACGAGCTCCCCTGGGAGCAGTGGACGCTCTCC GCGGAGGTGGCCATCCAGGCCAGCGAGGAGCAGCGGCTTGACAAATGGAACCTCATGGGG AGGCTTGGCAACCCAACGCGTGAGCTGATCACACGGTGCGCGGCATGGACGCGCCCAGAC ATCATATATGTCAAGCGGCCGCTCTACCAGTCGCGGTTCGAGCCGCAGAAGAATTTCTAT AGCCAGCTCCGCCCTTTGGTCGATCCCGTGACAGAGAACCAGTTCTTGTTTGATCTCGAG CATGATGGCCAGGTCATTCGCACTACCTACTTCGGTGGCCTATGCAGGATTGTGAAGGCG AGTCCAAAAGCTTATGTGGATGATGTTGTGAATGCGTACTCGAAACTGAGCGACGTGGAC AAAAACAGGTGCCTGGAGTTCCTGCTCACAAATCATCCCATGGAACTGCTCCATCCCTAC ACCAAGGAATGGAAGGTGAAGCTAGAGGAGATGGAGCTTGGATGCGATGCGCCTGATGAT AACGAGAGTGACGATGAGGGTGGTGATGAGAGTGGAACTGAGGTTGTTGATTGGGTTGAG GATGATGGGTTTGATGAGGGTGGTGATACCGATGATGATGAAGAACCTGGTTATGATGAC GACGAAGTAATCGATGTCAGGGAAGAGGTGGAAACAGAAGAAGTAGAAAGTGATGATGAG AGTGAGAAGTACTGGGATGAGCAATGGAAGCAGGCCATGAAAAGTTCTGATAAAATGGAG AAGTTGGTCAAGACAAGCATCGAAGCGTCAAATGAGTATAACAGGCGACGGATGCAACAG GAGAAAGAGATGGAATTGAGAATGGCCCGTGCAAACACAATGGTTATGAAGCAGGAGCAG ACTGAGGATGAGGATGAGCAGCAGGAGCAGATTGAGGATGAGGATGAGCAGCAGGAGAGT CCAAGGGGCAGAAGCGCAAAAGATAAGCGCAAGAGCAAGGCTCCTGGGCACTTTCTGAGG GCCGCTGTCCGACCATTCACCTACAGGAATCTTGTGAAAGAAATTGTTCTTATGAGGCAT TTCATTGTTGATGGAGAGATAGATTAG

Peptide Sequence

PEP ID	Os04t0497900-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:24894293:24896500:1 gene:Os04g0497900 transcript:Os04t0497900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SNOW-WHITE LEAF1, SNOW-WHITE LEAF 1 description:Unknown protein with the N-terminal chloroplast transit peptide, Formation of thylakoid membranes (Os04t0497900-01)
Sequence	MASASGSATLLYPKTPQSPRLLRRNPHYSGLRLVHPLLLATVSPPPPAALRRRRNSTTIH ASSSSAAAGAAAASFPASSTPPPRPPRTDPPEEHPTVARAGRSKKHRKPSGGRIEGGGDV RREAKSRARIRSRRLGENAFYRRKRRAAKENQADAFTDAELEMIGLGYDRSVRFMDGPDD PRLRHRHDWYRFGRYGPYSWRGIVVGPPIRGRFSDDRVSLMSEVSDHDEWDRVEQFDMSN QFSNRLNELDAAVGFRYYWVFVRHPRWRPDELPWEQWTLSAEVAIQASEEQRLDKWNLMG RLGNPTRELITRCAAWTRPDIIYVKRPLYQSRFEPQKNFYSQLRPLVDPVTENQFLFDLE HDGQVIRTTYFGGLCRIVKASPKAYVDDVVNAYSKLSDVDKNRCLEFLLTNHPMELLHPY TKEWKVKLEEMELGCDAPDDNESDDEGGDESGTEVVDWVEDDGFDEGGDTDDDEEPGYDD DEVIDVREEVETEEVESDDESEKYWDEQWKQAMKSSDKMEKLVKTSIEASNEYNRRRMQQ EKEMELRMARANTMVMKQEQTEDEDEQQEQIEDEDEQQESPRGRSAKDKRKSKAPGHFLR AAVRPFTYRNLVKEIVLMRHFIVDGEID

Transcript Sequence

Transcript ID	Os04t0497900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:24894293:24896500:1 gene:Os04g0497900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SNOW-WHITE LEAF1, SNOW-WHITE LEAF 1 description:Unknown protein with the N-terminal chloroplast transit peptide, Formation of thylakoid membranes (Os04t0497900-01)
Sequence	AAAAAATCCGTCTCTTACACGCAGAGGAGAAAAATCCCCAACCCGAAGCCCCAGGCCCCC AGCCATGGCGTCCGCGTCCGGCTCGGCCACCCTCCTCTACCCCAAAACCCCGCAATCCCC TCGCCTCCTCCGCCGCAACCCCCACTACTCCGGCCTCCGCCTCGTCCACCCCCTCCTCCT CGCCACCGTCTCCCCGCCGCCTCCCGCCGCCCTCCGACGCAGGCGCAACTCCACCACCAT CCATGCATCCTCCTCCTCCGCCGCCGCCGGCGCCGCCGCCGCTTCCTTCCCCGCCTCCTC GACCCCGCCTCCGCGCCCGCCGCGGACGGACCCGCCCGAGGAACACCCCACCGTGGCCCG CGCAGGCCGCAGCAAGAAGCACAGGAAGCCCTCGGGGGGACGCATCGAGGGCGGCGGCGA CGTGCGGCGCGAGGCCAAGTCCCGCGCCCGCATCCGCAGCCGCCGCCTCGGCGAGAACGC CTTCTACCGGAGGAAGCGGCGCGCCGCCAAGGAGAACCAGGCCGACGCCTTCACCGACGC CGAGCTGGAGATGATCGGCCTCGGCTACGACCGCTCCGTCCGCTTCATGGACGGGCCCGA CGACCCGCGCCTCCGCCACCGGCACGACTGGTACAGGTTCGGCCGCTACGGGCCCTACTC CTGGCGCGGCATCGTCGTCGGCCCGCCCATCCGCGGCCGCTTCTCCGACGACCGCGTCTC CCTCATGTCCGAGGTCTCCGACCACGACGAGTGGGACCGCGTCGAGCAGTTCGACATGTC CAACCAGTTCTCCAACCGCCTCAACGAGCTCGACGCCGCCGTCGGCTTCCGGTACTACTG GGTCTTCGTGAGACACCCTAGGTGGCGCCCCGACGAGCTCCCCTGGGAGCAGTGGACGCT CTCCGCGGAGGTGGCCATCCAGGCCAGCGAGGAGCAGCGGCTTGACAAATGGAACCTCAT GGGGAGGCTTGGCAACCCAACGCGTGAGCTGATCACACGGTGCGCGGCATGGACGCGCCC AGACATCATATATGTCAAGCGGCCGCTCTACCAGTCGCGGTTCGAGCCGCAGAAGAATTT CTATAGCCAGCTCCGCCCTTTGGTCGATCCCGTGACAGAGAACCAGTTCTTGTTTGATCT CGAGCATGATGGCCAGGTCATTCGCACTACCTACTTCGGTGGCCTATGCAGGATTGTGAA GGCGAGTCCAAAAGCTTATGTGGATGATGTTGTGAATGCGTACTCGAAACTGAGCGACGT GGACAAAAACAGGTGCCTGGAGTTCCTGCTCACAAATCATCCCATGGAACTGCTCCATCC CTACACCAAGGAATGGAAGGTGAAGCTAGAGGAGATGGAGCTTGGATGCGATGCGCCTGA TGATAACGAGAGTGACGATGAGGGTGGTGATGAGAGTGGAACTGAGGTTGTTGATTGGGT TGAGGATGATGGGTTTGATGAGGGTGGTGATACCGATGATGATGAAGAACCTGGTTATGA TGACGACGAAGTAATCGATGTCAGGGAAGAGGTGGAAACAGAAGAAGTAGAAAGTGATGA TGAGAGTGAGAAGTACTGGGATGAGCAATGGAAGCAGGCCATGAAAAGTTCTGATAAAAT GGAGAAGTTGGTCAAGACAAGCATCGAAGCGTCAAATGAGTATAACAGGCGACGGATGCA ACAGGAGAAAGAGATGGAATTGAGAATGGCCCGTGCAAACACAATGGTTATGAAGCAGGA GCAGACTGAGGATGAGGATGAGCAGCAGGAGCAGATTGAGGATGAGGATGAGCAGCAGGA GAGTCCAAGGGGCAGAAGCGCAAAAGATAAGCGCAAGAGCAAGGCTCCTGGGCACTTTCT GAGGGCCGCTGTCCGACCATTCACCTACAGGAATCTTGTGAAAGAAATTGTTCTTATGAG GCATTTCATTGTTGATGGAGAGATAGATTAGCTTTAAAATGCTAAGATGATATATTTTCA GAGCCACTAGATAACTGTAGAGATGGCAGAAACAGGTACCTGCAATTCCTCAATTGTGTT CAATTAGTGGATCTTACCAATTTTGATCTGTGCCCTTAGGGAATAGTCAGTCATGATGTA ATCCTTCCTTTGTGGAATTTTCAGTAAATTTTCGAGAATAGAAGCAACTACGGTATCTCT GAATTCTGTTATACTGTTTTATAGTCAAGTTGGAGTTTGGCTCAATTC