Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0494100-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:24708801:24709910:-1 gene:Os04g0494100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CHITINASE 5 description:Similar to Chitinase. (Os04t0494100-02)
Sequence

ATGGCGAACTCACCGACGCCGACAATGCTGGCGTTCCTGGCTCTTGGGCTAGCGCTCCTC
CTCTCCGCCACCGGCCAGGCGAGCGCGCAGAACTGCGGCTGCCAGTCGAACATGTGCTGC
AGCAAATGGGGGTACTGCGGCACGGGCAAGGACTACTGCGGAGATGGGTGCCGCTCTGGC
CCGTGCTACGGCGGCGGCGGCGGTGGAGGAGGAGGAGGCGGAGGTGGTGGAGGCGGAGGC
GGAGGCAGCGGCGTGTCTGTAGAGAGCGTGGTCACCGAGGCGTTCTTCAATGGGATCAAG
AACCAGGCCCCGAACGGTTGCGCCGGCAAGAACTTTTACACACGACAGTCGTTTCTTAAC
GCTGCCCACTCCTACTCGGGCTTCGCCAGGGACCGCACCAACGATGACTCCAAGCGTGAG
ATCGCTGCCTTCTTTGCCCACGTCACTCATGAGACCGGACATATGTGCTACATCAACGAG
ATAAACGGGGCGAGCATGGACTACTGCGACAAGAACAACAAGCAGTGGCCGTGCCAGCCG
GGGAAGAAGTACTACGGGCGCGGGCCGCTGCAGATCTCGTGGAACTACAACTACGGGCCT
GCGGGGCAGAACATCGGGTTCGACGGGCTGAGGGACCCGGACAGGGTGGCGCAGGACCCG
ACGATCTCCTTCAAGACGGCGCTCTGGTTCTGGATGAACAACGTGCACCAGGTGATGTTG
CAGGGGTTCGGCGCCACCATCCGGGCCATCAACGGTGCGCTCGAGTGCAACGGCAAGAAC
CCCGGCGCCGTCAACGCAAGGGTAAACTACTACAAAGACTACTGCCGCCAATTCGGCGTT
GACCCGGGTGGCAACCTTTACTGTTGA

Peptide Sequence

PEP ID

Os04t0494100-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:24708801:24709910:-1 gene:Os04g0494100 transcript:Os04t0494100-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CHITINASE 5 description:Similar to Chitinase. (Os04t0494100-02)
Sequence

MANSPTPTMLAFLALGLALLLSATGQASAQNCGCQSNMCCSKWGYCGTGKDYCGDGCRSG
PCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLN
AAHSYSGFARDRTNDDSKREIAAFFAHVTHETGHMCYINEINGASMDYCDKNNKQWPCQP
GKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNNVHQVML
QGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC

Transcript Sequence

Transcript ID

Os04t0494100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:24708801:24709910:-1 gene:Os04g0494100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CHITINASE 5 description:Similar to Chitinase. (Os04t0494100-02)
Sequence

AATCAACCATCACCTCTTTCACACCATATCCTATAATGGCGAACTCACCGACGCCGACAA
TGCTGGCGTTCCTGGCTCTTGGGCTAGCGCTCCTCCTCTCCGCCACCGGCCAGGCGAGCG
CGCAGAACTGCGGCTGCCAGTCGAACATGTGCTGCAGCAAATGGGGGTACTGCGGCACGG
GCAAGGACTACTGCGGAGATGGGTGCCGCTCTGGCCCGTGCTACGGCGGCGGCGGCGGTG
GAGGAGGAGGAGGCGGAGGTGGTGGAGGCGGAGGCGGAGGCAGCGGCGTGTCTGTAGAGA
GCGTGGTCACCGAGGCGTTCTTCAATGGGATCAAGAACCAGGCCCCGAACGGTTGCGCCG
GCAAGAACTTTTACACACGACAGTCGTTTCTTAACGCTGCCCACTCCTACTCGGGCTTCG
CCAGGGACCGCACCAACGATGACTCCAAGCGTGAGATCGCTGCCTTCTTTGCCCACGTCA
CTCATGAGACCGGACATATGTGCTACATCAACGAGATAAACGGGGCGAGCATGGACTACT
GCGACAAGAACAACAAGCAGTGGCCGTGCCAGCCGGGGAAGAAGTACTACGGGCGCGGGC
CGCTGCAGATCTCGTGGAACTACAACTACGGGCCTGCGGGGCAGAACATCGGGTTCGACG
GGCTGAGGGACCCGGACAGGGTGGCGCAGGACCCGACGATCTCCTTCAAGACGGCGCTCT
GGTTCTGGATGAACAACGTGCACCAGGTGATGTTGCAGGGGTTCGGCGCCACCATCCGGG
CCATCAACGGTGCGCTCGAGTGCAACGGCAAGAACCCCGGCGCCGTCAACGCAAGGGTAA
ACTACTACAAAGACTACTGCCGCCAATTCGGCGTTGACCCGGGTGGCAACCTTTACTGTT
GAGTTACATGCACACATGCTGCGCGGCTCATCGATCAGGACTGAATAATAAACAAAGTAA
TAACGAATAAAACGTTTGGTGTGTACGTACATTGCATGCACGTACGGTACATGTTGCAAG
TG