Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0493300-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:24667566:24670952:-1 gene:Os04g0493300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0522A01.11 protein. (Os04t0493300-01);Similar to H0522A01.11 protein. (Os04t0493300-02)
Sequence

CTCCGTAATCCCCGTTACCGCCGTGGTCGGAGCCGCCGAGCGCCGCCGTCGCGCCTCCCT
CCACCGTCTTCCCACGCCGCCGCGCGACGGCTGCGGCGGTCGTCTTCCCCATTCGTCCCA
TCGATCCTCCTCCGGCTCAGTTCCACAGAAGCGCCACCTCATCACGAAGGCAATTTTACA
GTTCGAACATTAGGAAGCATGAGCTATTTCCAGGCTACAACATACAAGCCTCATAATGGG
ATCATTGTGGACAAGGTAGCAATAGGTCTTGGGAGTACTTGCAAATTGCTTCATGAAAGG
GCCAAATGTTCGTATTCCAATAGATTCATCAAGCTTCAAGAGCAAGTATACCCAAGGCTT
CTTCTTGTTGCTGCTTGCCATAACAGGATTGGTCCTGTGTATGCCTCAAGTGGGAAAGGA
AACTCTGAGCGTGTCAATGATCCCTTCTCCATGGAATCTTTGAACAAAGCTATAGCTGGA
ACTAAAAAGCAATGGCCCATACAAGATATGCTGATAGATCAAATTTCTAAGATTAGAGGG
TCTGGCTCTGGTGGAAATGGTGGTGGTAATAAAAACAGTCATGAAGGCAGTGGTGGTGGC
TCAGAGGACGAATCTTTGACGGAGTCATTATATGAAATGGTCCAAGTTTTGTTGGCAACT
ATTGCCTTTATACTCATGTACATCCATATAATAAGAGGAGAGGAGTTATACCGCCTTGCG
AGGGACTACACTAGATACCTGGTTACTGGTAAGAGAACTTCCAGACTGAAACGCGCCATG
TTAAACTGGCACAATTTCTGTGAGGGCATCACCAACAAGGATAGCGTGCAAGAGTCAACA
TTTGAAAGATCAACTTCTGAACCAATGTGGTGGCAGCAGCCCCTAAAGTTTGTCCATCGC
ATTGAGGAACTTTACAGAGGCTATTTTCGCCCACATGCCCAGGAATCATAG

Peptide Sequence

PEP ID

Os04t0493300-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:24667566:24670952:-1 gene:Os04g0493300 transcript:Os04t0493300-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0522A01.11 protein. (Os04t0493300-01);Similar to H0522A01.11 protein. (Os04t0493300-02)
Sequence

LRNPRYRRGRSRRAPPSRLPPPSSHAAARRLRRSSSPFVPSILLRLSSTEAPPHHEGNFT
VRTLGSMSYFQATTYKPHNGIIVDKVAIGLGSTCKLLHERAKCSYSNRFIKLQEQVYPRL
LLVAACHNRIGPVYASSGKGNSERVNDPFSMESLNKAIAGTKKQWPIQDMLIDQISKIRG
SGSGGNGGGNKNSHEGSGGGSEDESLTESLYEMVQVLLATIAFILMYIHIIRGEELYRLA
RDYTRYLVTGKRTSRLKRAMLNWHNFCEGITNKDSVQESTFERSTSEPMWWQQPLKFVHR
IEELYRGYFRPHAQES

Transcript Sequence

Transcript ID

Os04t0493300-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:24667566:24670952:-1 gene:Os04g0493300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0522A01.11 protein. (Os04t0493300-01);Similar to H0522A01.11 protein. (Os04t0493300-02)
Sequence

ACCTCCGTAATCCCCGTTACCGCCGTGGTCGGAGCCGCCGAGCGCCGCCGTCGCGCCTCC
CTCCACCGTCTTCCCACGCCGCCGCGCGACGGCTGCGGCGGTCGTCTTCCCCATTCGTCC
CATCGATCCTCCTCCGGCTCAGTTCCACAGAAGCGCCACCTCATCACGAAGGCAATTTTA
CAGTTCGAACATTAGGAAGCATGAGCTATTTCCAGGCTACAACATACAAGCCTCATAATG
GGATCATTGTGGACAAGGTAGCAATAGGTCTTGGGAGTACTTGCAAATTGCTTCATGAAA
GGGCCAAATGTTCGTATTCCAATAGATTCATCAAGCTTCAAGAGCAAGTATACCCAAGGC
TTCTTCTTGTTGCTGCTTGCCATAACAGGATTGGTCCTGTGTATGCCTCAAGTGGGAAAG
GAAACTCTGAGCGTGTCAATGATCCCTTCTCCATGGAATCTTTGAACAAAGCTATAGCTG
GAACTAAAAAGCAATGGCCCATACAAGATATGCTGATAGATCAAATTTCTAAGATTAGAG
GGTCTGGCTCTGGTGGAAATGGTGGTGGTAATAAAAACAGTCATGAAGGCAGTGGTGGTG
GCTCAGAGGACGAATCTTTGACGGAGTCATTATATGAAATGGTCCAAGTTTTGTTGGCAA
CTATTGCCTTTATACTCATGTACATCCATATAATAAGAGGAGAGGAGTTATACCGCCTTG
CGAGGGACTACACTAGATACCTGGTTACTGGTAAGAGAACTTCCAGACTGAAACGCGCCA
TGTTAAACTGGCACAATTTCTGTGAGGGCATCACCAACAAGGATAGCGTGCAAGAGTCAA
CATTTGAAAGATCAACTTCTGAACCAATGTGGTGGCAGCAGCCCCTAAAGTTTGTCCATC
GCATTGAGGAACTTTACAGAGGCTATTTTCGCCCACATGCCCAGGAATCATAGTTCTGAT
GATTGAGGATCCCTTTGGACTCTTCTCAAGATTTCAGTGTATGTTGTAACCGTGCATAGG
TAGGCACTAGTTGCATGGACGGTGCAGTGAAGCGCATGGAGGAAACTAGACGGTCTGTTC
TTTACTGCATTCAGTTTTTCTTGCGTAGTGCAGCTGAATACTACGTTATATATTGTCTGT
ATTGTTCATTACAGAACATAAAGGAAGGTGATAGTTCGTCTGGAC