Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0492300-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:24593234:24604107:1 gene:Os04g0492300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to DNA-directed RNA polymerase II largest chain. (Os04t0492300-01)
Sequence	ATGGCGCGGCCGGAGGAGAAGCTGCGGTGCACGAAGGAGCCCTTCATCGAGGATGTCGGC ACGCGGAGGATAAAGAGCATCCGGTTCAGCATGTTCTCGGGGAACGAGGTGCGCCAATCC GCGGAGGTGCAGGTTTGGAACAGCCGGATCTACAACCATGAGATGAAGCCGGTGCCCAAT GGATTGCTCGACACGCGGATGGGTGCGGCAAACAAGCTTGGGGAGTGCAGTACTTGCCAT GGTTCATTTGCTGAATGCCCGGGTCATTTTGGTTACTTGAAGCTCGCCCTTCCAGTTTTT AATGTTGGATTCTTTAACTGTATTTTGGATGTATTGAAGTGCATCTGCAAGAGCTGCAGC AGGGTTCTTCTTATGGAGAAAGATCGGCTAGAGTTTTTGAAGAAAATGAGAAATCCCAAA GCAGATCCGCTACAGAAAAGTGCTATCATGAAAAAAGTGAGGGACAAATGCAAACTATCC CGTTGCCCCTGGTGTGGATTCATAAATGGTGTTGCTAAAAAGGGCAGAGCAGGGTTGATT ATTCTTCATGATTGTAGCAAAACATTGGATGGAAGCACAGAAGAGCTTCGGGACGCACTA TCACATAAGAAAGAGAAACTATCTATTAGTGCTGTTCGCATGCTAGACCCTGCAATTGTT CTATCTCTTTTCAAAAGAATGACCGATGAGGATTGTGAGTTGCTAAACCTCGGTGATAGG CCTGAGAAACTTATTGTGACAGAGATTGCAGTGCCACCTGTACCTATACGTCCTTCTGTT TTCGTGGCTGGTGGAAGAATGAGCAATGAAGATAGCATTACCGTCATATTGAAGAGTATT GCTAATACTAATTCCATCCTTAAGGAGAACCTTCAAACTGGTGGTCAGTTCATGAAGTGC TTTGATTGCTGGCAACACCTTCAACTTCAAGTTGTTGAATATATCAACAGTGACGCACCC TCTCTTCCCGAGTCACAACATCGAGGCCTTGTTCAGCGACTCAAAGGGAAGACAGGCCGA TTTCGTGGTAACTTGTCTGGAAAACGTACCGAGTACACTGGAAGGACTGTCATTTCTCCT GATCCAAACTTGAGAATAACAGAGGTGGCTATTCCCATCCTGATGGCTCGAGTTTTGACT TATCCTGAAAGAGTTTCATACTATAACATAGAGAAGCTGCGTCAGTGTATACGGAATGGT CCACACAAACATCCAGGGGCAAATTTCATCATACAACCTGATGGAACAAAGCTGCACTTA AAGTATTGCGATAGAAGAATTGCTGCTCGAGATTTGAAGTATGGCTGTGTAGTCGAAAGG CATTTAGAAGATGGAGACATTGTCCTCTTCAATAGACAACCGAGCTTGCATAGAATGTCA ATTATGTCTCACAGGGCTAGGATTATGCCCTGGAGAACACTAAGGTTTAACGAGTCTGTC TGTAACCCATATAATGCTGATTTTGATGGCGATGAGATGAATTTGCATGTTCCTCAGACT GAGGAAGCCCGCACTGAAGCGCTTATGCTCATGGGGGTTCAGAACAATTTATGTACCCCA AAGAATGGGGAAATACTGGTTGCATCCACGCAAGACTTTTTGACTTCCTCTTTTCTGGTT ACAAGAAAAGATAACTTTTATGACAGGTCGTCATTTTCTCTCTTATGTTCATATCTTGGT GATGCAATGGAAAACATTGATTTGCCAACACCTGCTCTGATTAAGCCTATTGAGCTTTGG ACTGGTAAACAACTCTTCAGTGTGTTAGTACGTCCTAACGCATGTACAAAGGTGTTTCTG AATCTTACTGTTAAAGAGAAAATTTATAAGACTCCTAAGGGTTCAACTCTGGAACCTGAA GCAATGTGTCCCAATGATGGTTTTGTCTACTTCCGAAACAGTGAACTTCTATCTGGGCAA GTTGGGAAGGCCACTTTAGGTAATGGGAATAAGGATGGCATGTTCTCCACTCTTGTAAGA GATTATAATTCTCATGCTGCGGCAAGCTGTATGAACCGCTTGGCAAAATTTAGTGCAAGA TTTATAGGGAACCATGGTTTCTCAATTGGTGTGGACGATGTCCAACCGGGAGAACATTTA AACCAAGAGAAGAAAATGAAAATAGATGGAGGGTACAAAGATTGCCATGATCTTATTGCT TCCTATTCCAAAGGTGCACTCCGTTTGCAGCCCGGTTGCAACGCAGCCCAAACATTGGAG CAAAGTATAACTCGTGTACTGAATGAAATCAGAGAAGAAGCTGGAAAAGTCTGTATGAAT ACACTTCACTGGAGGAACAGCCCATTGATCATGTCTCAGTGTGGATCTAAAGGTTCTCCA ATCAACATTAGTCAGATGGTTGCATGTGTTGGCCAACAATCAGTTGGAGGGCGTCGTGCC CCGAATGGCTTCATAGATCGAACTCTTCCCCACTTTCCTATAAATTCAAAGACTCCTGCA GCCAAAGGCTTTGTCGCTAATTCTTTCTATACTGGCTTGACTGCCACCGAATTCTTCTTC CATACGATGGGTGGGCGAGAAGGTCTTGTTGATACAGCGGTTAAAACAGCTGAAACAGGA TATATGTCCCGCAGATTAATGAAGGGATTGGAAGATCTCTCAGTTTTCTATGATCAGACG GTCCGCAATGCTAGTGGTGGTATTGTACAGTTCCTCTATGGAGATGATGGCATGGATCCT GCAAAGATGGAAGGGAAAGATGGAAAGCCCTTAAATTTGGATCAATTGTTTATGAAAGTC ATGGCCACTTGTCCTCAAAGGGGACAGAATACATTATCTCCAGGTGAAATCTTACAAATT TTAAATGACAAGCTCTCTGAACATGATGCCTCCTCTGATGATGGTTGTAGCGAAAAGTTC AAGCAACTGTTAACGTATTTTCTTGAGGATCGTATAAAATTGCTGAAGAGCACAAGGAGA GCGCTTCTCCTAGATGAAGATCATGTTGGAGAGAGGCACTCCAGCTTTGAAGAATCCATT GCTGCTAATATTTCTGGTATATCTGTGAAGCAACTACAGGTTTTCTTGGACACATGTTTA TCTCGTTACCACTTGAAGAAAATTGAAGCCGGAGCATCAATTGGGGCAATTGGGGCTCAA AGTATTGGAGAGCCTGGAACTCAGATGACATTGAAAACTTTCCATTTTGCAGGAGTAGCT AGCATGAATGTTACTCTTGGTGTTCCTCGCATCAAGGAAATTATCAATGCTGCTAAAAAG ATAAGCACACCTATTATCACTGCTGAGTTACTTTCTGAGAAGGATGTGTTGTCTGCACGC ATTGTGAAAGGCTCTATGGAAAAGGCAGTGCTGGGTGAGGTGGCTGAAGCCATAAAGATT GTGTTGAAATCAAGTCAACCAAACTTGGTTGTTAAACTCGATATGCAACGTATAGAAGCC CTGCACATGGGCATCTCTGCTGACTCTGTGCAGCTGTCAATATTGAATCATCCAAAAATA AAGCTAAAATCTGAGCATGTTCGTGTTATTGATAAATCCAAGTTGAGAATTTATCCAGCT GGAATAGATAAGTCCAAACTTCTATATGAGTTACATCATCTCAAATCCATGCTTCCAAAA GTGATCGTGAAGGGTATTCCAACTGTTGAAAGAGCTGTGATCAGCGAAACTGGTGAAGAA AATGACAAAAGATACAAGTTGTTGGTTGAGGGAACAAATCTCTTGGCAGTAATGGGTACT CCAGGAGTTGATGCTATGAAAACAAAAAGTAACCACATCATGGAAGTGAACCGAACACTC GGAATTGAAGCTGCGAGGAGATCTATTATTGATGAAATTCAGTATACAATGAAAAGTCAT GGGATGAACATTGATTCGAGACATATGATGCTTCTGGCAGATTTGATGACATACAAGGGT GAAATTCTTGGCATTACTAGATATGGTATTGCAAAAATGAAAAGTAGTGTGCTGATGCTG GCTTCGTTTGAGAAAACAGCGGAGCATCTCTTTAATGCATCATACAGTGGTCGTGAGGAT CAGATAGAGGGAGTTAGTGAATGCATTATCATGGGTATACCCATGCAACTTGGCACTGGT ATTCTCAAAGTCAGACAAAGGCTTGACCATTTGCCTGAATTTAAATATCAGCCTGATCCA ATATTGGCGTGA

Peptide Sequence

PEP ID	Os04t0492300-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:24593234:24604107:1 gene:Os04g0492300 transcript:Os04t0492300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to DNA-directed RNA polymerase II largest chain. (Os04t0492300-01)
Sequence	MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS RVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLI ILHDCSKTLDGSTEELRDALSHKKEKLSISAVRMLDPAIVLSLFKRMTDEDCELLNLGDR PEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMKC FDCWQHLQLQVVEYINSDAPSLPESQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVISP DPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQPDGTKLHL KYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESV CNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLV TRKDNFYDRSSFSLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNACTKVFL NLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLGNGNKDGMFSTLVR DYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMKIDGGYKDCHDLIA SYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMNTLHWRNSPLIMSQCGSKGSP INISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATEFFF HTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDP AKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSEHDASSDDGCSEKF KQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGISVKQLQVFLDTCL SRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKK ISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNLVVKLDMQRIEA LHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKLLYELHHLKSMLPK VIVKGIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTL GIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVLML ASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQPDP ILA

Transcript Sequence

Transcript ID	Os04t0492300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:24593234:24604107:1 gene:Os04g0492300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to DNA-directed RNA polymerase II largest chain. (Os04t0492300-01)
Sequence	ATCTAGGGTCCCGCGCCGCCGCCAACTCTCCCCCGTTCCTCCCCTTTCCGCGCGAGCGGC GAGCCGGCGGGCGGCGGCTGTCGGAGGTTCGCCTCGCCTCGCCTCCTCTCCCGCGCCGCC GGCGAGAAGGCCCGTAGGTGCGTTGTGTACGGTTTCCTCTCCTTCTCCACCTCGCCCTAG CCTCCTCTCTCTCTCCCTCTCCCTCGCCCTAAGCCCCTACAAAACCCCAGCTCCATTCCC CATTGCTACCGTCACCTCTCCCTCTCCCCTTCCTACTCTGCCTCCTCCGCCAGGTTTTCA CGATCCGAAGCGGCTCCGGCTCGCGAACGGCGGCGTCGAGCGGAGCCCAGTCGGGAGGGG AGATGGCGCGGCCGGAGGAGAAGCTGCGGTGCACGAAGGAGCCCTTCATCGAGGATGTCG GCACGCGGAGGATAAAGAGCATCCGGTTCAGCATGTTCTCGGGGAACGAGGTGCGCCAAT CCGCGGAGGTGCAGGTTTGGAACAGCCGGATCTACAACCATGAGATGAAGCCGGTGCCCA ATGGATTGCTCGACACGCGGATGGGTGCGGCAAACAAGCTTGGGGAGTGCAGTACTTGCC ATGGTTCATTTGCTGAATGCCCGGGTCATTTTGGTTACTTGAAGCTCGCCCTTCCAGTTT TTAATGTTGGATTCTTTAACTGTATTTTGGATGTATTGAAGTGCATCTGCAAGAGCTGCA GCAGGGTTCTTCTTATGGAGAAAGATCGGCTAGAGTTTTTGAAGAAAATGAGAAATCCCA AAGCAGATCCGCTACAGAAAAGTGCTATCATGAAAAAAGTGAGGGACAAATGCAAACTAT CCCGTTGCCCCTGGTGTGGATTCATAAATGGTGTTGCTAAAAAGGGCAGAGCAGGGTTGA TTATTCTTCATGATTGTAGCAAAACATTGGATGGAAGCACAGAAGAGCTTCGGGACGCAC TATCACATAAGAAAGAGAAACTATCTATTAGTGCTGTTCGCATGCTAGACCCTGCAATTG TTCTATCTCTTTTCAAAAGAATGACCGATGAGGATTGTGAGTTGCTAAACCTCGGTGATA GGCCTGAGAAACTTATTGTGACAGAGATTGCAGTGCCACCTGTACCTATACGTCCTTCTG TTTTCGTGGCTGGTGGAAGAATGAGCAATGAAGATAGCATTACCGTCATATTGAAGAGTA TTGCTAATACTAATTCCATCCTTAAGGAGAACCTTCAAACTGGTGGTCAGTTCATGAAGT GCTTTGATTGCTGGCAACACCTTCAACTTCAAGTTGTTGAATATATCAACAGTGACGCAC CCTCTCTTCCCGAGTCACAACATCGAGGCCTTGTTCAGCGACTCAAAGGGAAGACAGGCC GATTTCGTGGTAACTTGTCTGGAAAACGTACCGAGTACACTGGAAGGACTGTCATTTCTC CTGATCCAAACTTGAGAATAACAGAGGTGGCTATTCCCATCCTGATGGCTCGAGTTTTGA CTTATCCTGAAAGAGTTTCATACTATAACATAGAGAAGCTGCGTCAGTGTATACGGAATG GTCCACACAAACATCCAGGGGCAAATTTCATCATACAACCTGATGGAACAAAGCTGCACT TAAAGTATTGCGATAGAAGAATTGCTGCTCGAGATTTGAAGTATGGCTGTGTAGTCGAAA GGCATTTAGAAGATGGAGACATTGTCCTCTTCAATAGACAACCGAGCTTGCATAGAATGT CAATTATGTCTCACAGGGCTAGGATTATGCCCTGGAGAACACTAAGGTTTAACGAGTCTG TCTGTAACCCATATAATGCTGATTTTGATGGCGATGAGATGAATTTGCATGTTCCTCAGA CTGAGGAAGCCCGCACTGAAGCGCTTATGCTCATGGGGGTTCAGAACAATTTATGTACCC CAAAGAATGGGGAAATACTGGTTGCATCCACGCAAGACTTTTTGACTTCCTCTTTTCTGG TTACAAGAAAAGATAACTTTTATGACAGGTCGTCATTTTCTCTCTTATGTTCATATCTTG GTGATGCAATGGAAAACATTGATTTGCCAACACCTGCTCTGATTAAGCCTATTGAGCTTT GGACTGGTAAACAACTCTTCAGTGTGTTAGTACGTCCTAACGCATGTACAAAGGTGTTTC TGAATCTTACTGTTAAAGAGAAAATTTATAAGACTCCTAAGGGTTCAACTCTGGAACCTG AAGCAATGTGTCCCAATGATGGTTTTGTCTACTTCCGAAACAGTGAACTTCTATCTGGGC AAGTTGGGAAGGCCACTTTAGGTAATGGGAATAAGGATGGCATGTTCTCCACTCTTGTAA GAGATTATAATTCTCATGCTGCGGCAAGCTGTATGAACCGCTTGGCAAAATTTAGTGCAA GATTTATAGGGAACCATGGTTTCTCAATTGGTGTGGACGATGTCCAACCGGGAGAACATT TAAACCAAGAGAAGAAAATGAAAATAGATGGAGGGTACAAAGATTGCCATGATCTTATTG CTTCCTATTCCAAAGGTGCACTCCGTTTGCAGCCCGGTTGCAACGCAGCCCAAACATTGG AGCAAAGTATAACTCGTGTACTGAATGAAATCAGAGAAGAAGCTGGAAAAGTCTGTATGA ATACACTTCACTGGAGGAACAGCCCATTGATCATGTCTCAGTGTGGATCTAAAGGTTCTC CAATCAACATTAGTCAGATGGTTGCATGTGTTGGCCAACAATCAGTTGGAGGGCGTCGTG CCCCGAATGGCTTCATAGATCGAACTCTTCCCCACTTTCCTATAAATTCAAAGACTCCTG CAGCCAAAGGCTTTGTCGCTAATTCTTTCTATACTGGCTTGACTGCCACCGAATTCTTCT TCCATACGATGGGTGGGCGAGAAGGTCTTGTTGATACAGCGGTTAAAACAGCTGAAACAG GATATATGTCCCGCAGATTAATGAAGGGATTGGAAGATCTCTCAGTTTTCTATGATCAGA CGGTCCGCAATGCTAGTGGTGGTATTGTACAGTTCCTCTATGGAGATGATGGCATGGATC CTGCAAAGATGGAAGGGAAAGATGGAAAGCCCTTAAATTTGGATCAATTGTTTATGAAAG TCATGGCCACTTGTCCTCAAAGGGGACAGAATACATTATCTCCAGGTGAAATCTTACAAA TTTTAAATGACAAGCTCTCTGAACATGATGCCTCCTCTGATGATGGTTGTAGCGAAAAGT TCAAGCAACTGTTAACGTATTTTCTTGAGGATCGTATAAAATTGCTGAAGAGCACAAGGA GAGCGCTTCTCCTAGATGAAGATCATGTTGGAGAGAGGCACTCCAGCTTTGAAGAATCCA TTGCTGCTAATATTTCTGGTATATCTGTGAAGCAACTACAGGTTTTCTTGGACACATGTT TATCTCGTTACCACTTGAAGAAAATTGAAGCCGGAGCATCAATTGGGGCAATTGGGGCTC AAAGTATTGGAGAGCCTGGAACTCAGATGACATTGAAAACTTTCCATTTTGCAGGAGTAG CTAGCATGAATGTTACTCTTGGTGTTCCTCGCATCAAGGAAATTATCAATGCTGCTAAAA AGATAAGCACACCTATTATCACTGCTGAGTTACTTTCTGAGAAGGATGTGTTGTCTGCAC GCATTGTGAAAGGCTCTATGGAAAAGGCAGTGCTGGGTGAGGTGGCTGAAGCCATAAAGA TTGTGTTGAAATCAAGTCAACCAAACTTGGTTGTTAAACTCGATATGCAACGTATAGAAG CCCTGCACATGGGCATCTCTGCTGACTCTGTGCAGCTGTCAATATTGAATCATCCAAAAA TAAAGCTAAAATCTGAGCATGTTCGTGTTATTGATAAATCCAAGTTGAGAATTTATCCAG CTGGAATAGATAAGTCCAAACTTCTATATGAGTTACATCATCTCAAATCCATGCTTCCAA AAGTGATCGTGAAGGGTATTCCAACTGTTGAAAGAGCTGTGATCAGCGAAACTGGTGAAG AAAATGACAAAAGATACAAGTTGTTGGTTGAGGGAACAAATCTCTTGGCAGTAATGGGTA CTCCAGGAGTTGATGCTATGAAAACAAAAAGTAACCACATCATGGAAGTGAACCGAACAC TCGGAATTGAAGCTGCGAGGAGATCTATTATTGATGAAATTCAGTATACAATGAAAAGTC ATGGGATGAACATTGATTCGAGACATATGATGCTTCTGGCAGATTTGATGACATACAAGG GTGAAATTCTTGGCATTACTAGATATGGTATTGCAAAAATGAAAAGTAGTGTGCTGATGC TGGCTTCGTTTGAGAAAACAGCGGAGCATCTCTTTAATGCATCATACAGTGGTCGTGAGG ATCAGATAGAGGGAGTTAGTGAATGCATTATCATGGGTATACCCATGCAACTTGGCACTG GTATTCTCAAAGTCAGACAAAGGCTTGACCATTTGCCTGAATTTAAATATCAGCCTGATC CAATATTGGCGTGATACAAGCTAGAAGCCTAGAACCAGCTTAATTTGTCTGAAGCTGGAA TTCTGTACAGATATATAGAGGGGTTGGATGTATAAGCATGTATAAGCATCATATAGCAGG GCAGCTACGGCAACTGTAATTTGAGGCAAGTATGCACTGCTGAGGTAGCATTGGGGCAAA ACTCCCTTTTTTCTGATAGTCCACCGTATGTTTCAGCTTATTTTGGTTTCAATCCCCCAG GTTTATTCTGTTTCCAGAGCAGGATTAGTTTAAAGTTCAAACATATACTAGCTAGGTGCA GTGTGCCACAGTTTGATTAGAATTGGGCCCGCTCATTGAACTTTTCTAAAGAAGGAAAAA ATGGTCCCTGGTCTAATGTCAAAAGCTTGAGCAGAACAAAGTAAATATCACGTCTCTCTT TTGGTT