Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0487300-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:24352461:24355355:-1 gene:Os04g0487300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to DNA-directed RNA polymerases II 24 kDa polypeptide. (Os04t0487300-01)
Sequence

ATGGCGTCGGAGGAGGAGACGAGCCGGCTTTTCCGCATCCGCCGCACGGTGATGCAGATG
CTGCGGGACAGGGGCTACCTCGTGACGGAGTTGGACATCGACCTCCCGAGGGGCGACTTC
GTCGCACGCTTCGGGGATCCCGTCGACCGCGACCATCTCGTCTTCAGCCGCCACAAGAAG
GACAACGGCGCCGACCAGATCTACGTCTTCTTCCCCAAGGACGCGAAGCCCGGGGTGAAG
ACGATCAGGAGCTACGTGGAGAGGATGAAGCAGGAGAGCGTGTTCAACGGCATCCTCGTC
GTGCAGCAGGCGCTCAGCGCGTTCGCCCGCAGCGCCGTGCAGGAGGTCTCCCAGAAGTTC
CACCTCGAGGTCTTCCAGGAAGCGGAACTGCTTGTGAACATTAAGGATCATACCCTTGTG
CCAGAGCACGAGCTCCTGACGCCTGAGCAGAAGAAGACGCTGCTGGAGCGGTATACCGTG
AAAGAGACTCAGGTCTGGAAATAG

Peptide Sequence

PEP ID

Os04t0487300-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:24352461:24355355:-1 gene:Os04g0487300 transcript:Os04t0487300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to DNA-directed RNA polymerases II 24 kDa polypeptide. (Os04t0487300-01)
Sequence

MASEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKK
DNGADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKF
HLEVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQVWK

Transcript Sequence

Transcript ID

Os04t0487300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:24352461:24355355:-1 gene:Os04g0487300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to DNA-directed RNA polymerases II 24 kDa polypeptide. (Os04t0487300-01)
Sequence

CCTTCCCCCTTGTCGGCGCGGACGCTCCCCCCACAAAACCCTAGCGAAACCCCGCGGCGG
CGGCGGAAGGGAGAGGAGATAGATGGCGTCGGAGGAGGAGACGAGCCGGCTTTTCCGCAT
CCGCCGCACGGTGATGCAGATGCTGCGGGACAGGGGCTACCTCGTGACGGAGTTGGACAT
CGACCTCCCGAGGGGCGACTTCGTCGCACGCTTCGGGGATCCCGTCGACCGCGACCATCT
CGTCTTCAGCCGCCACAAGAAGGACAACGGCGCCGACCAGATCTACGTCTTCTTCCCCAA
GGACGCGAAGCCCGGGGTGAAGACGATCAGGAGCTACGTGGAGAGGATGAAGCAGGAGAG
CGTGTTCAACGGCATCCTCGTCGTGCAGCAGGCGCTCAGCGCGTTCGCCCGCAGCGCCGT
GCAGGAGGTCTCCCAGAAGTTCCACCTCGAGGTCTTCCAGGAAGCGGAACTGCTTGTGAA
CATTAAGGATCATACCCTTGTGCCAGAGCACGAGCTCCTGACGCCTGAGCAGAAGAAGAC
GCTGCTGGAGCGGTATACCGTGAAAGAGACTCAGGTCTGGAAATAGACATTTTTTATTTT
CTCATAGGTGTAGTATTTGAATTGATTTGAGCATAATGTCATCGATGTTTCATTCATGTG
TTGATATCTGCACAACAGTAAAAGGTTTTGTGGGCAGCATTTTTGGACAACTATTGGTGA
ATCATGACAATTTTCCAGGAGGCTTGCATACATACGTATTGTTTGTGTCGCCATTAAACA
TGTCACATATTTCCTGATACTTATCATAGCCTCATAGGAAATAGACTAGTGACTAGTAAT
TACTAGTAGCCTCATAGGAAAGTATGAGGCTATGAGGAAATAGCCTCATAGCCTTGATAC
TTTTCGAGACATTGTGGCTTGTTTACATAAACTCCCCTTCATTACCTGTACTGCATTCGA
AGTTTGGTATCTGCTGCACTCTAGTTAACACATCGCAGCTCAGGTAACCTAACTCCTTGC
TGTAAACCATCTAATAAACTAATAAATCAACAGTTCTCTCTGACATTCAGTGCTGCAAAT
GAATAAAATTTGTTAGAATGAATATAATTGATAGTAGTGGGGGCATACATTTTAAGTTTT
AACCACATTCCCTGAATGCTCTTTTTATCGATCTTTTTTTTCTAATTGTTAAGAGAAGTA
AATTCAGGTTTATGTGCTGTTGAACTTTGTCTGGCAGTGGAAACCAGGGCTGTTCATAAT
GTTGTTGTTGTTTTAAGTCATCTTGTTTTAGATACTGAGCCTAACTCAGTTGGTCAAGTG
TGTGAATGTAAGCCCAGACCACCCAAGTTCTTATTTAAAAATGCCACCTAGTTCCTCCTA
GGTTGGTCGAGTTTTTTTTAAAAAAAGTAATCTTGTTTTGTGAACTTTTAACTTATTGTT
GTTTATTATGTCCTGTTTACAATGCGAACTTGCATTGTTCATGTTAGTTTTAAGATAACT
GGTTCTATAAAATGTGTTAGGTCATAGTTTAACAGAACAAGGTGTCAAGGTTTCTATATC
ACTTCAGTAGACAATCACGATAAATGACAATCTGGTTCTTGTTTTAGAGTCAAAGCTGCT
AGTTGAGCAATGTGATAATGCAGTTTTAATGTTATATGAGGTGGTAGCAGCATAACCTAA
TACAATAGGATATCAAGGTTCTGTTTATTTATATGCTTCGAATGCGACACTTTCAGATCT
TAACGCTGACGAGCTTGTCTTGTTACAAAGTTACCATGATAAATACTCTAATGGCATTGA
CTTACTCAGTTGCATGTGATTCTTTACTATGGCATGTGTCATGTTGGATAATGGGAAGAA
TATAAGGCACCCGATGTGCTGGGGATGTTGATCTGAGAAGCTCTTTGTTTTCATGTTCTA
ACATTCTATTTCTTTGTTAATTTGCAATCTGTTTAGTTTGATACATAATTTCTGAAGGGA
ATAGAAGAAATTCAATGAGTACCAGTCACCTCTGTTTCCTTTTTACGTTTTTTACATCCC
CCAATTTTGACACCTCATTCTAAAATATAAGTGTCTTCGCAATTATCAAGATAACTTCAA
ACCTTATTAGATAACTAATTGAATGGACTCCACATGCAGATGTTTCTGTAAACTTTACTG
CAGTAGCACATTCTGTTCTGATGACATTGAATTTGTATTATGAATGCAGCTCCCCCGGAT
TCAAATTACGGACCCAATAGCAAGATATTACGGCATGAAGCGTGGGCAAGTTGTAAAGAT
CATCCGTGCTAGTGAGACCGCTGGAAGATATGTGACGTACCGTTATGTGGTGTGATCTTC
ACTACATTTCACGCTTGGCCTATGCGACGAATATTACCAGTGAAAATCACTCTGTTGCTA
ATTCATTTCCTGTAGTAGAAACACTCGTCAGCAAGTAACAGAAGTGCTGGGGTGCCTTGT
TTCTCTTTGTTGAGCTTGTTTGGCATAGCGGTGTTAGCACTAGACGTAGGTTTCTGTATC
CGTGTTCCATTTCACCCTACCAAATCATTTGTGGCTATCAGAAATGTGTTTGATTGGGTG
GGTCTATTTCATCTTTCGTGCCTGCCTGTATGATGTTTGTTTGATTGAAAATGGCATAAG
AATGCCTTCCGGGACC