Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0487100-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:24339609:24343781:1 gene:Os04g0487100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Galactose oxidase/kelch, beta-propeller domain containing protein. (Os04t0487100-01)
Sequence

ATGGCGAGACCGGCGGCGACGGCGGCGGCGCCGAAGGCGCCCCCTCCGAAGCACCTGATT
GCGCTCGCCGTCGTCGCCATCCTCGGCCTCGTCCTTGTCGCCGACTTCCTCTGGGCCTCC
TCCTCCCCCGCCGCCCCCGCCTGGTCCTCCAGGATCGATCTCCCCGGCCGCCCGGCCGCC
CTCGTGCCACCCTCGGGGAAGAAGCAAACAAAGGAAAAAATATCTATAGGTTCCACGGAC
ATAAATGCAACCTTTGCAGATTTGCCAGCACCAGAACTACAATGGGAGGAGATGGCTGAA
GCACCTGTGCCACGTTTGGATGGTGCTGCTATGCAAATTAAGAATCTCTTATATGTGTTT
GCTGGATATGGTACCATTAACCATGTGCATTCTCATGTGGATATTTACAATTTCTCAGAT
AATACATGGGGTGGGAGGTTTGATATGCCAAAGGAAATGGCTCATTCACATTTGGGGATG
GTTACAGATGGAAGATATGTTTATGTGGTAACAGGACAGTATGGTCCGCAATGTAGGGGG
CCCACAGCACGAAATTTTGTGCTGGACACTGAAACAAAAGAATGGCACGATTTGCCTCCA
TTGCCAGTTCCTAGATATGCTCCAGCCACACAACTTTGGAGAGGCAGGCTTCATGTGATG
GGTGGCAGCAAGGAGGATAGGCATGAACCTGGGCTTGAACATTGGAGCATTGCAGTAAAG
GATGGGAAAGCCCTGGAAAACGAGTGGAGGAGTGAGGTACCAATCCCACGTGGAGGCCCT
CATAGGGCTTGTGTTGTTGCTAATGATAAGCTACTTGTTATTGGTGGCCAAGAAGGAGAT
TTTATGGCGAAACCTGGATCACCTATATTTAAATGTGTTAGAAGAAGTGAGGTGGTCTAC
AGCAATGTCTACATGCTTGATGATGGAATGAAGTGGAAAGAATTTCCACCTATGCCAAAG
CCAGATTCACATATAGAGTTTGCTTGGGTGAATGTTAACAATTCTCTCATTATTGCTGGA
GGAACCACAGAAAAGCACCCAATAACCAAAAAAATGGTTTTAGTTGGTGAAGTGTTTCGG
TTCAACTTGAACACACTGGAATGGACTGTGATTGGGCGGTTACCTTTCCGAATCAAGACC
ACTCTGGTAGGATACTGGGATGGCTGGCTGTATTTCACTTCTGGGCAACGAGACAAAGGA
CCGAAAGACCCTTCTCCTAAGAAGGTTGTCGGATGCATGTGGAGAACTAAGTTGCACCTG
TGA

Peptide Sequence

PEP ID

Os04t0487100-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:24339609:24343781:1 gene:Os04g0487100 transcript:Os04t0487100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Galactose oxidase/kelch, beta-propeller domain containing protein. (Os04t0487100-01)
Sequence

MARPAATAAAPKAPPPKHLIALAVVAILGLVLVADFLWASSSPAAPAWSSRIDLPGRPAA
LVPPSGKKQTKEKISIGSTDINATFADLPAPELQWEEMAEAPVPRLDGAAMQIKNLLYVF
AGYGTINHVHSHVDIYNFSDNTWGGRFDMPKEMAHSHLGMVTDGRYVYVVTGQYGPQCRG
PTARNFVLDTETKEWHDLPPLPVPRYAPATQLWRGRLHVMGGSKEDRHEPGLEHWSIAVK
DGKALENEWRSEVPIPRGGPHRACVVANDKLLVIGGQEGDFMAKPGSPIFKCVRRSEVVY
SNVYMLDDGMKWKEFPPMPKPDSHIEFAWVNVNNSLIIAGGTTEKHPITKKMVLVGEVFR
FNLNTLEWTVIGRLPFRIKTTLVGYWDGWLYFTSGQRDKGPKDPSPKKVVGCMWRTKLHL

Transcript Sequence

Transcript ID

Os04t0487100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:24339609:24343781:1 gene:Os04g0487100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Galactose oxidase/kelch, beta-propeller domain containing protein. (Os04t0487100-01)
Sequence

ACTCCGATGCACCTGCCCTCGCCGACTCGCCGTTAAATGCCACCGACACACTCCACTCCT
CGCTGCCGCCGCCGCCGCATCTGACCACCCGGCGATGGCGAGACCGGCGGCGACGGCGGC
GGCGCCGAAGGCGCCCCCTCCGAAGCACCTGATTGCGCTCGCCGTCGTCGCCATCCTCGG
CCTCGTCCTTGTCGCCGACTTCCTCTGGGCCTCCTCCTCCCCCGCCGCCCCCGCCTGGTC
CTCCAGGATCGATCTCCCCGGCCGCCCGGCCGCCCTCGTGCCACCCTCGGGGAAGAAGCA
AACAAAGGAAAAAATATCTATAGGTTCCACGGACATAAATGCAACCTTTGCAGATTTGCC
AGCACCAGAACTACAATGGGAGGAGATGGCTGAAGCACCTGTGCCACGTTTGGATGGTGC
TGCTATGCAAATTAAGAATCTCTTATATGTGTTTGCTGGATATGGTACCATTAACCATGT
GCATTCTCATGTGGATATTTACAATTTCTCAGATAATACATGGGGTGGGAGGTTTGATAT
GCCAAAGGAAATGGCTCATTCACATTTGGGGATGGTTACAGATGGAAGATATGTTTATGT
GGTAACAGGACAGTATGGTCCGCAATGTAGGGGGCCCACAGCACGAAATTTTGTGCTGGA
CACTGAAACAAAAGAATGGCACGATTTGCCTCCATTGCCAGTTCCTAGATATGCTCCAGC
CACACAACTTTGGAGAGGCAGGCTTCATGTGATGGGTGGCAGCAAGGAGGATAGGCATGA
ACCTGGGCTTGAACATTGGAGCATTGCAGTAAAGGATGGGAAAGCCCTGGAAAACGAGTG
GAGGAGTGAGGTACCAATCCCACGTGGAGGCCCTCATAGGGCTTGTGTTGTTGCTAATGA
TAAGCTACTTGTTATTGGTGGCCAAGAAGGAGATTTTATGGCGAAACCTGGATCACCTAT
ATTTAAATGTGTTAGAAGAAGTGAGGTGGTCTACAGCAATGTCTACATGCTTGATGATGG
AATGAAGTGGAAAGAATTTCCACCTATGCCAAAGCCAGATTCACATATAGAGTTTGCTTG
GGTGAATGTTAACAATTCTCTCATTATTGCTGGAGGAACCACAGAAAAGCACCCAATAAC
CAAAAAAATGGTTTTAGTTGGTGAAGTGTTTCGGTTCAACTTGAACACACTGGAATGGAC
TGTGATTGGGCGGTTACCTTTCCGAATCAAGACCACTCTGGTAGGATACTGGGATGGCTG
GCTGTATTTCACTTCTGGGCAACGAGACAAAGGACCGAAAGACCCTTCTCCTAAGAAGGT
TGTCGGATGCATGTGGAGAACTAAGTTGCACCTGTGAGATTTTTAGAAGGAAAACTGATA
TGACCATTGACTAAGCCCATTCTTTATGCATTCTTTTGGGTACATAACTGTTCCATTCCC
CTATGGTGGGCGAGTTGTTTATTATCATACGAATTGTTGGCTTTGTTGTGCATTGTCACA
TCATGCCACTAATCTGTTGTATGCTTACCTTTTTGGTTATATCATAGAATGACCGACTTT
TACGC