Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0486950-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:24325769:24328250:-1 gene:Os04g0486950 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MALATE SYNTHASE description:Similar to Malate synthase. (Os04t0486950-01)
Sequence	ATGGCCACCAACGCCGCAGCGCCGCCGTGCCCGTGCTACGACACGCCGGAGGGCGTGGAC ATCCTCGGCCGGTACGACCCGGAGTTCGCGGCCATCCTCACCCGCGACTCGCTGGCCTTC GTGGCCGGCCTGCAGCGCGAGTTCCGCGGCGCCGTCCGGTACGCCATGGAGCGCAGGCGG GAGGCGCAGCGGCGGTACGACGCCGGCGAGCTCCCCCGGTTCGACCCGGCCACGAGGCCC GTCCGCGAGGCAGGCGGCTGGGCGTGCGCCCCCGTGCCGCCGGCCATCGCCGACCGCACC GTCGAGATCACCGGCCCCGCCGAGCCGCGCAAGATGGTCATCAACGCCCTCAACTCCGGC GCCAAGGTCTTCATGGCTGACTTCGAGGACGCGCTGTCGCCGACGTGGGAGAACCTGATG CGCGGGCAGGTGAACCTGCGCGACGCGGTTGCCGGCACGATCACCTACCGCGACGCGGCG CGAGGGCGGGAGTACAGGCTCGGCGACCGCCCCGCGACGCTCTTCGTGAGGCCGCGCGGC TGGCACCTCCCCGAGGCGCACGTCCTCGTCGACGGCGAGCCGGCCATCGGCTGCCTCGTC GACTTCGGCCTCTACTTCTTCCACAGCCACGCCGCCTTCCGCTCCGGCCAGGGCGCCGAC TTCGGCCCCTTCTTCTACCTCCCCAAGATGGAGCACTCTAGGGAGGCGAGGATATGGAAG GGGGTGTTCGAGAGGGCGGAGAAGGAGGCGGGGATAGGGAGGGGGAGCATCAGGGCGACG GTGCTGGTGGAGACGCTGCCGGCGGTGTTCCAGATGGAGGAGATCCTGCACGAGCTGCGC GACCACTCGGCGGGGCTCAACTGCGGCCGCTGGGACTACATCTTCAGCTACGTCAAGACG TTCCGCGCCCGCCCCGACCGCCTCCTCCCCGACCGCGCCCTCGTCGGCATGGCCCAGCAC TTCATGCGCTCCTACTCCCACCTCCTCATCCAGACCTGCCACCGCCGCGGCGTCCACGCC ATGGGCGGCATGGCGGCGCAGATCCCGATCAAGGACGACGCGGCGGCGAACGAGGCGGCG CTGGAGCTGGTGCGCAAGGACAAGCTGCGGGAGGTGCGCGCCGGGCACGACGGGACGTGG GCGGCGCACCCGGGGCTCATCCCGGCGATCCGGGAGGTGTTCGAGGGACACCTCGGAGGG AGGCCGAACCAGATCGACGCGGCGGCTGGCGACGCCGCCCGTGCCGGCGTCGCCGTCACG GAGGAGGACCTGCTCCAGCCGCCGCGCGGGGCGCGCACGGTGGAGGGCCTGCGCCACAAC ACGCGCGTCGGCGTGCAGTACGTCGCGGCGTGGCTATCCGGGTCGGGCTCCGTGCCGCTG TACAACCTGATGGAGGACGCCGCCACCGCGGAGATCAGCCGGGTGCAGAACTGGCAGTGG CTCCGGCACGGCGCGGTGCTGGACGCCGGCGGCGTGGAGGTCCGGGCCACGCCCGAGCTG CTGGCGCGCGTCGTGGAGGTGGAGATGGCGAGGGTGGAGGCCGAGGTGGGCGCCGAGAGG TTCCGGCGCGGCCGGTACGCGGAGGCCGGCAGGATCTTCAGCCGGCAGTGCACCGCGCCG GAGCTGGACGACTTCCTCACGCTCGACGCGTACAACCTCATCGTGGTGCACCACCCCGGA GCATCGTCGCCGTGCAAGCTCTGA

Peptide Sequence

PEP ID	Os04t0486950-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:24325769:24328250:-1 gene:Os04g0486950 transcript:Os04t0486950-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MALATE SYNTHASE description:Similar to Malate synthase. (Os04t0486950-01)
Sequence	MATNAAAPPCPCYDTPEGVDILGRYDPEFAAILTRDSLAFVAGLQREFRGAVRYAMERRR EAQRRYDAGELPRFDPATRPVREAGGWACAPVPPAIADRTVEITGPAEPRKMVINALNSG AKVFMADFEDALSPTWENLMRGQVNLRDAVAGTITYRDAARGREYRLGDRPATLFVRPRG WHLPEAHVLVDGEPAIGCLVDFGLYFFHSHAAFRSGQGADFGPFFYLPKMEHSREARIWK GVFERAEKEAGIGRGSIRATVLVETLPAVFQMEEILHELRDHSAGLNCGRWDYIFSYVKT FRARPDRLLPDRALVGMAQHFMRSYSHLLIQTCHRRGVHAMGGMAAQIPIKDDAAANEAA LELVRKDKLREVRAGHDGTWAAHPGLIPAIREVFEGHLGGRPNQIDAAAGDAARAGVAVT EEDLLQPPRGARTVEGLRHNTRVGVQYVAAWLSGSGSVPLYNLMEDAATAEISRVQNWQW LRHGAVLDAGGVEVRATPELLARVVEVEMARVEAEVGAERFRRGRYAEAGRIFSRQCTAP ELDDFLTLDAYNLIVVHHPGASSPCKL

Transcript Sequence

Transcript ID	Os04t0486950-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:24325769:24328250:-1 gene:Os04g0486950 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MALATE SYNTHASE description:Similar to Malate synthase. (Os04t0486950-01)
Sequence	ACGCTCTCTGCACACTCCCATTTTCTACTCACACTTGGGATCGGTGCTCGAACGAATTCC ACTCGACTGACTCCATGGCCACCAACGCCGCAGCGCCGCCGTGCCCGTGCTACGACACGC CGGAGGGCGTGGACATCCTCGGCCGGTACGACCCGGAGTTCGCGGCCATCCTCACCCGCG ACTCGCTGGCCTTCGTGGCCGGCCTGCAGCGCGAGTTCCGCGGCGCCGTCCGGTACGCCA TGGAGCGCAGGCGGGAGGCGCAGCGGCGGTACGACGCCGGCGAGCTCCCCCGGTTCGACC CGGCCACGAGGCCCGTCCGCGAGGCAGGCGGCTGGGCGTGCGCCCCCGTGCCGCCGGCCA TCGCCGACCGCACCGTCGAGATCACCGGCCCCGCCGAGCCGCGCAAGATGGTCATCAACG CCCTCAACTCCGGCGCCAAGGTCTTCATGGCTGACTTCGAGGACGCGCTGTCGCCGACGT GGGAGAACCTGATGCGCGGGCAGGTGAACCTGCGCGACGCGGTTGCCGGCACGATCACCT ACCGCGACGCGGCGCGAGGGCGGGAGTACAGGCTCGGCGACCGCCCCGCGACGCTCTTCG TGAGGCCGCGCGGCTGGCACCTCCCCGAGGCGCACGTCCTCGTCGACGGCGAGCCGGCCA TCGGCTGCCTCGTCGACTTCGGCCTCTACTTCTTCCACAGCCACGCCGCCTTCCGCTCCG GCCAGGGCGCCGACTTCGGCCCCTTCTTCTACCTCCCCAAGATGGAGCACTCTAGGGAGG CGAGGATATGGAAGGGGGTGTTCGAGAGGGCGGAGAAGGAGGCGGGGATAGGGAGGGGGA GCATCAGGGCGACGGTGCTGGTGGAGACGCTGCCGGCGGTGTTCCAGATGGAGGAGATCC TGCACGAGCTGCGCGACCACTCGGCGGGGCTCAACTGCGGCCGCTGGGACTACATCTTCA GCTACGTCAAGACGTTCCGCGCCCGCCCCGACCGCCTCCTCCCCGACCGCGCCCTCGTCG GCATGGCCCAGCACTTCATGCGCTCCTACTCCCACCTCCTCATCCAGACCTGCCACCGCC GCGGCGTCCACGCCATGGGCGGCATGGCGGCGCAGATCCCGATCAAGGACGACGCGGCGG CGAACGAGGCGGCGCTGGAGCTGGTGCGCAAGGACAAGCTGCGGGAGGTGCGCGCCGGGC ACGACGGGACGTGGGCGGCGCACCCGGGGCTCATCCCGGCGATCCGGGAGGTGTTCGAGG GACACCTCGGAGGGAGGCCGAACCAGATCGACGCGGCGGCTGGCGACGCCGCCCGTGCCG GCGTCGCCGTCACGGAGGAGGACCTGCTCCAGCCGCCGCGCGGGGCGCGCACGGTGGAGG GCCTGCGCCACAACACGCGCGTCGGCGTGCAGTACGTCGCGGCGTGGCTATCCGGGTCGG GCTCCGTGCCGCTGTACAACCTGATGGAGGACGCCGCCACCGCGGAGATCAGCCGGGTGC AGAACTGGCAGTGGCTCCGGCACGGCGCGGTGCTGGACGCCGGCGGCGTGGAGGTCCGGG CCACGCCCGAGCTGCTGGCGCGCGTCGTGGAGGTGGAGATGGCGAGGGTGGAGGCCGAGG TGGGCGCCGAGAGGTTCCGGCGCGGCCGGTACGCGGAGGCCGGCAGGATCTTCAGCCGGC AGTGCACCGCGCCGGAGCTGGACGACTTCCTCACGCTCGACGCGTACAACCTCATCGTGG TGCACCACCCCGGAGCATCGTCGCCGTGCAAGCTCTGAGAGCCTGAGCACATGTATACCT CATCGTTGTAGCTACATATAATAAGGACGAGGCTTCAAACTTTACTCTTAGAATACTTAC ATATATATACAAGGTGGTAATAATTCTCTCCGTGTAACTTCTCCGAGTACTTTGCTCATA CTTATTAAGAAAATATTTTTGTTTGATCTGTGATCTGTGTAAGAGAGAAACAGAGAACAA TTCCTGTTTGTTTGCACTAGAAATTCTGAAATATCAAATATATCAGGTTCACCGAGAGGA AATAAC