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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0481200-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:24064726:24067935:1 gene:Os04g0481200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0510A06.2 protein. (Os04t0481200-01)
Sequence

ATGCCGAAGCAACCCCGCCGCCGTAGTACTCGCTATAAATCCACCTCGCCGCTGCTTCTT
CTCGGTGTCTCGCATTGCCGGACGGCCGGCGTCGACATGAGGCTCGTGGTGGTGTGGCTC
GCCGCGGTGGCGGTTCTTGGTCTGGCCAGCCATGGGCGCCCCGCGGCGGCGGCGGCAGCG
ACGACGCTGTCGACGGCGTCGAGGTGGATCGTCGACGAGGGCGGGAACAGGGTGAAGCTG
GCGTGCGTGAACTGGCCGTCGCACCTGGAGCCGATGCTGGCGGAAGGGCTGGGCAAGCAG
CCTGTGGGCGCCATCGCCAAGGACGTGGTCGCCATGGGTTTCAACTGCGTCCGCCTCACC
TGGGCCACGTTCATGGTGACCAACGCCTCCTACTCCTCCCTCACCGTCGCCCAGTCCTTC
CAGCGCCTCAACCTCACCGAGTCCCTCGCCGCCATCCGCGTCAACAACCCCTCCCTCGTC
GACCTCAAGCTCATCGACGCCTTCAAGGCGGTGGTGAGTAGCCTGGGGGAGAACGGCGTG
ATGGTGATACTGGACAACCACGTGAGCAAGCCGGGGTGGTGCTGCGGCAACAACGACGGC
AACGGCTTCTTCGGCGACGCGTACTTCGACCCGGACGTGTGGGTCGACGGCCTCACCAAG
ATGGCCACCATGTTCGCCGCCGTCCCCAGCGTCGTCGCCATGAGCCTCCGCAACGAGCTC
CGGGGCCCCCGCCAGAACTCCGCCGACTGGTACAAGTACATGCAGCGCGGGGCGGAGGCG
GTGCACGCGGCGAACCCGCGCGTGGTGGTGATCCTGTCCGGCATGAGCTTCGACAACGAC
CTGGCGTTCCTCAACTCGCGGCAGGTGAACGTCAGCTTCGCCGGGAAGGTGGCGTTCGAG
GTGCACTGGTACGGCTTCTCCGACGGGCAGGCGTGGCGGGCGGGGAACGCCAACCAGGTG
TGCGCGCGGGTGGCGGCGAGCGTGTCGCGCCGCGCGCTGTACCTGCTCGACCAAGGGTGG
CCGGTGTTCCTCAGCGAGTTCGGCGTCGACAACCGCGGCGGCAACGTCAACGACAACCGG
TACTACGGCTGCGTCGCCGCCGTCGCCGCCGACCTCGACCTCGACTGGGCGCTCTGGACG
CTGCAGGGGAGTTACTACCTCCGGGAGGGCGTCCTGGGCCTCGACGAGGTCTACGGCGTG
CTCGACTGGGCGTGGTGCAAGCCCCGCAACGACACCGCCCTGACCAGGCTCCACGCCCTG
CAGCGCCCCTTCAGAGGGCCTGGTCTGGCGGAGGCGGCGCCGTACACGGTGATGTTCCAC
CCGACGACGGGGCGGTGCGTGGTGCGGCGGTCGTCGTCGGTGGTGCAGACGACGCTGGAG
CTGGGGTCCTGCGGCGAGGCGGAGGCGTGGGCGTACACGGCGAGCCAGCAGAGGCTGTCG
CCGCGGGACAGCCCGCTGCTGTGCCTCCGCGCCGAGGGCGCCGGCCGGCCGGCGCGCCTC
GGCCTGTCGTGCGGCGACGAGCTGGCGCGGTGGAGCCTCACCTCGGACTCCAAGCTGCAC
CTCGCCGTCAACGCCTCGTCGTCGTCGTCGTCCCCCGAGACCAGCAACGGCGGCATGCTC
TGCCTGGACGTCGGCGACGATGGCCGGAGCTTGGTGACCAACCCGTGCCGGTGCCTGAGC
GCGGACAACAGCTGCGACCCGGAGAGCCAGTGGTTCAAGCTGGTGACCAGCACGAGGAGC
GTGGCGGCGACGAACACCATGCTCGCGCAGCTGCCGCCAAAGCTCAGGTCATGGAAGATT
AGGTCCCTCTGA

Peptide Sequence

PEP ID

Os04t0481200-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:24064726:24067935:1 gene:Os04g0481200 transcript:Os04t0481200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0510A06.2 protein. (Os04t0481200-01)
Sequence

MPKQPRRRSTRYKSTSPLLLLGVSHCRTAGVDMRLVVVWLAAVAVLGLASHGRPAAAAAA
TTLSTASRWIVDEGGNRVKLACVNWPSHLEPMLAEGLGKQPVGAIAKDVVAMGFNCVRLT
WATFMVTNASYSSLTVAQSFQRLNLTESLAAIRVNNPSLVDLKLIDAFKAVVSSLGENGV
MVILDNHVSKPGWCCGNNDGNGFFGDAYFDPDVWVDGLTKMATMFAAVPSVVAMSLRNEL
RGPRQNSADWYKYMQRGAEAVHAANPRVVVILSGMSFDNDLAFLNSRQVNVSFAGKVAFE
VHWYGFSDGQAWRAGNANQVCARVAASVSRRALYLLDQGWPVFLSEFGVDNRGGNVNDNR
YYGCVAAVAADLDLDWALWTLQGSYYLREGVLGLDEVYGVLDWAWCKPRNDTALTRLHAL
QRPFRGPGLAEAAPYTVMFHPTTGRCVVRRSSSVVQTTLELGSCGEAEAWAYTASQQRLS
PRDSPLLCLRAEGAGRPARLGLSCGDELARWSLTSDSKLHLAVNASSSSSSPETSNGGML
CLDVGDDGRSLVTNPCRCLSADNSCDPESQWFKLVTSTRSVAATNTMLAQLPPKLRSWKI
RSL

Transcript Sequence

Transcript ID

Os04t0481200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:24064726:24067935:1 gene:Os04g0481200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0510A06.2 protein. (Os04t0481200-01)
Sequence

GGTGGCCATTTTTACTCCAACCACCCACCGACCGACGTGCAGAGATTCTTTGTTTTCTCT
GGTTCTGATTTCTGAAATAGGCCAGGTTGGTTTGGCTCATCAGTCGGATTATCAACCGGA
TTATTAGTACCACGATTCCAAAACAGCATAGCTTAGGAGAGATCGTCGTCTTCCGCCCAT
GGCAATCCCGTGAAGCCTCGCCATTCCCCATGCCGAAGCAACCCCGCCGCCGTAGTACTC
GCTATAAATCCACCTCGCCGCTGCTTCTTCTCGGTGTCTCGCATTGCCGGACGGCCGGCG
TCGACATGAGGCTCGTGGTGGTGTGGCTCGCCGCGGTGGCGGTTCTTGGTCTGGCCAGCC
ATGGGCGCCCCGCGGCGGCGGCGGCAGCGACGACGCTGTCGACGGCGTCGAGGTGGATCG
TCGACGAGGGCGGGAACAGGGTGAAGCTGGCGTGCGTGAACTGGCCGTCGCACCTGGAGC
CGATGCTGGCGGAAGGGCTGGGCAAGCAGCCTGTGGGCGCCATCGCCAAGGACGTGGTCG
CCATGGGTTTCAACTGCGTCCGCCTCACCTGGGCCACGTTCATGGTGACCAACGCCTCCT
ACTCCTCCCTCACCGTCGCCCAGTCCTTCCAGCGCCTCAACCTCACCGAGTCCCTCGCCG
CCATCCGCGTCAACAACCCCTCCCTCGTCGACCTCAAGCTCATCGACGCCTTCAAGGCGG
TGGTGAGTAGCCTGGGGGAGAACGGCGTGATGGTGATACTGGACAACCACGTGAGCAAGC
CGGGGTGGTGCTGCGGCAACAACGACGGCAACGGCTTCTTCGGCGACGCGTACTTCGACC
CGGACGTGTGGGTCGACGGCCTCACCAAGATGGCCACCATGTTCGCCGCCGTCCCCAGCG
TCGTCGCCATGAGCCTCCGCAACGAGCTCCGGGGCCCCCGCCAGAACTCCGCCGACTGGT
ACAAGTACATGCAGCGCGGGGCGGAGGCGGTGCACGCGGCGAACCCGCGCGTGGTGGTGA
TCCTGTCCGGCATGAGCTTCGACAACGACCTGGCGTTCCTCAACTCGCGGCAGGTGAACG
TCAGCTTCGCCGGGAAGGTGGCGTTCGAGGTGCACTGGTACGGCTTCTCCGACGGGCAGG
CGTGGCGGGCGGGGAACGCCAACCAGGTGTGCGCGCGGGTGGCGGCGAGCGTGTCGCGCC
GCGCGCTGTACCTGCTCGACCAAGGGTGGCCGGTGTTCCTCAGCGAGTTCGGCGTCGACA
ACCGCGGCGGCAACGTCAACGACAACCGGTACTACGGCTGCGTCGCCGCCGTCGCCGCCG
ACCTCGACCTCGACTGGGCGCTCTGGACGCTGCAGGGGAGTTACTACCTCCGGGAGGGCG
TCCTGGGCCTCGACGAGGTCTACGGCGTGCTCGACTGGGCGTGGTGCAAGCCCCGCAACG
ACACCGCCCTGACCAGGCTCCACGCCCTGCAGCGCCCCTTCAGAGGGCCTGGTCTGGCGG
AGGCGGCGCCGTACACGGTGATGTTCCACCCGACGACGGGGCGGTGCGTGGTGCGGCGGT
CGTCGTCGGTGGTGCAGACGACGCTGGAGCTGGGGTCCTGCGGCGAGGCGGAGGCGTGGG
CGTACACGGCGAGCCAGCAGAGGCTGTCGCCGCGGGACAGCCCGCTGCTGTGCCTCCGCG
CCGAGGGCGCCGGCCGGCCGGCGCGCCTCGGCCTGTCGTGCGGCGACGAGCTGGCGCGGT
GGAGCCTCACCTCGGACTCCAAGCTGCACCTCGCCGTCAACGCCTCGTCGTCGTCGTCGT
CCCCCGAGACCAGCAACGGCGGCATGCTCTGCCTGGACGTCGGCGACGATGGCCGGAGCT
TGGTGACCAACCCGTGCCGGTGCCTGAGCGCGGACAACAGCTGCGACCCGGAGAGCCAGT
GGTTCAAGCTGGTGACCAGCACGAGGAGCGTGGCGGCGACGAACACCATGCTCGCGCAGC
TGCCGCCAAAGCTCAGGTCATGGAAGATTAGGTCCCTCTGATGATTAGCCAAATCCATCT
TGCACGTGCGCGTGAGCACAAGCTCACCATATACATGGTGGAGTAATCCACGTATCCATT
GTTGTTGTAGAATGATCTTGCAAATTGCAATCGCCATGACGCCATCTGGCGCAGGAAGGA
GAAGACACTGCCCTTGAACAAGAGCGGTGTTCTTGTGATGTAACAATTCAATTCATGATT
CATCC