Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0472300-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:23608630:23611023:1 gene:Os04g0472300 gene_biotype:protein_coding transcript_biotype:protein_coding description:PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os04t0472300-01);Hypothetical conserved gene. (Os04t0472300-02)
Sequence

TATGATCCATTAGCAGAATATCTCTCATTCATTGACAATGGTGCTTTCTCTGTTGATGGA
GTATTGACTGATTTTCCTGTTACACCTTCAGAAGCCATAGGCTGCTTTACTAATCTGAAG
AAAAGCAAAACAGATCATGGAAAGCCTCTAATTATTTCCCACAATGGTGCTAGTGGGGAT
TACCCAGCCTGCACTGATCTAGCTTATCAAAAAGCAGTTGATGATGGTGCCGATGTCATT
GATTGCCCTGTCCAATTGACCAAAGATGGCATACCAATATGCATGAGTTCCATTAACTTG
ATGGATGATACTACAGTTGCAAAATCACAGTTCGCCTCTCAGACAGCAGTAATCAAAGAT
ATTGAGAGTGTGCTAGGAGTCTTTACCTTCAACCTTACTTGGGATGACATCGTAAAGAAT
CTGAGACCCAAAATCTCTACCCCGTTTAGCTCCTTCAAACTGGACAGAAATCCAAGATAT
AGGAATGCGGGGAATTTCATGAGATTATCAGACTTTCTGGACTTCACAAAGGATAAGGAT
TTATCAGGAATTATGATCAGCGTGGAGCATGCTGCTTTTGTGGCGGAGGAACTTGGGTTT
GACATGGTAGACTCAGTTATCAAGACCCTCGATGCTGCTGGTTACAGCAACCAAACTGCC
CAGAAAGTTATGATTCAGTCAAGCAACAGCTCGGTTTTGGTGAAGTTCAAGCAGCAAACG
AAGTACGACCTTGTGTACATGATCAACGAGGAGGTCAAGGACGCCGCGCCTTCTTCCCTC
GCTGCCATCAAGAAGTTTGCCGATGCCGTTTCCGTCGAAGGCAACTCTATATTCCCCGAG
AACCGCCATTTCACTACCTACCAGACCAACCTCGTCGAGTCCCTGCAGAATGCCGGTCTC
CCGGTCTATGTTTACACTCTCATGAACGAGTTCGCTTCTCAGCCATACGACTTCTTCTCG
GACGCGACCGCGCAGATCAATGCGTATGTTCAGGGTGCTGGAGTGAATGGCGTGATCACA
GATTTCCCGGCAACAGCACGGAGATACAAATTGAACACCTGTATGCACATGGGGAACAAC
ACGCCGAGCTTCATGGCCCCGGCTCGCCCGGGTGACCTGCTGCAGATCATCAGTAAGCCG
GCGCAGCCGCCGGCGATGTCGCCGATGCCCCTCCTGACGGGCTCGGACGTGGCGGAGCCG
CCGCTGCCGCCTGCAAGAACAGCTCAGGCGCCGTCGCTCGCGAGCAGGATGCAGGCTCAT
GCCGCGATCGTCGTCACATTGGCGATGCTTCTCGCTTGCCATCCCCTGGTATGA

Peptide Sequence

PEP ID

Os04t0472300-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:23608630:23611023:1 gene:Os04g0472300 transcript:Os04t0472300-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os04t0472300-01);Hypothetical conserved gene. (Os04t0472300-02)
Sequence

YDPLAEYLSFIDNGAFSVDGVLTDFPVTPSEAIGCFTNLKKSKTDHGKPLIISHNGASGD
YPACTDLAYQKAVDDGADVIDCPVQLTKDGIPICMSSINLMDDTTVAKSQFASQTAVIKD
IESVLGVFTFNLTWDDIVKNLRPKISTPFSSFKLDRNPRYRNAGNFMRLSDFLDFTKDKD
LSGIMISVEHAAFVAEELGFDMVDSVIKTLDAAGYSNQTAQKVMIQSSNSSVLVKFKQQT
KYDLVYMINEEVKDAAPSSLAAIKKFADAVSVEGNSIFPENRHFTTYQTNLVESLQNAGL
PVYVYTLMNEFASQPYDFFSDATAQINAYVQGAGVNGVITDFPATARRYKLNTCMHMGNN
TPSFMAPARPGDLLQIISKPAQPPAMSPMPLLTGSDVAEPPLPPARTAQAPSLASRMQAH
AAIVVTLAMLLACHPLV

Transcript Sequence

Transcript ID

Os04t0472300-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:23608630:23611023:1 gene:Os04g0472300 gene_biotype:protein_coding transcript_biotype:protein_coding description:PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os04t0472300-01);Hypothetical conserved gene. (Os04t0472300-02)
Sequence

GCTATGATCCATTAGCAGAATATCTCTCATTCATTGACAATGGTGCTTTCTCTGTTGATG
GAGTATTGACTGATTTTCCTGTTACACCTTCAGAAGCCATAGGCTGCTTTACTAATCTGA
AGAAAAGCAAAACAGATCATGGAAAGCCTCTAATTATTTCCCACAATGGTGCTAGTGGGG
ATTACCCAGCCTGCACTGATCTAGCTTATCAAAAAGCAGTTGATGATGGTGCCGATGTCA
TTGATTGCCCTGTCCAATTGACCAAAGATGGCATACCAATATGCATGAGTTCCATTAACT
TGATGGATGATACTACAGTTGCAAAATCACAGTTCGCCTCTCAGACAGCAGTAATCAAAG
ATATTGAGAGTGTGCTAGGAGTCTTTACCTTCAACCTTACTTGGGATGACATCGTAAAGA
ATCTGAGACCCAAAATCTCTACCCCGTTTAGCTCCTTCAAACTGGACAGAAATCCAAGAT
ATAGGAATGCGGGGAATTTCATGAGATTATCAGACTTTCTGGACTTCACAAAGGATAAGG
ATTTATCAGGAATTATGATCAGCGTGGAGCATGCTGCTTTTGTGGCGGAGGAACTTGGGT
TTGACATGGTAGACTCAGTTATCAAGACCCTCGATGCTGCTGGTTACAGCAACCAAACTG
CCCAGAAAGTTATGATTCAGTCAAGCAACAGCTCGGTTTTGGTGAAGTTCAAGCAGCAAA
CGAAGTACGACCTTGTGTACATGATCAACGAGGAGGTCAAGGACGCCGCGCCTTCTTCCC
TCGCTGCCATCAAGAAGTTTGCCGATGCCGTTTCCGTCGAAGGCAACTCTATATTCCCCG
AGAACCGCCATTTCACTACCTACCAGACCAACCTCGTCGAGTCCCTGCAGAATGCCGGTC
TCCCGGTCTATGTTTACACTCTCATGAACGAGTTCGCTTCTCAGCCATACGACTTCTTCT
CGGACGCGACCGCGCAGATCAATGCGTATGTTCAGGGTGCTGGAGTGAATGGCGTGATCA
CAGATTTCCCGGCAACAGCACGGAGATACAAATTGAACACCTGTATGCACATGGGGAACA
ACACGCCGAGCTTCATGGCCCCGGCTCGCCCGGGTGACCTGCTGCAGATCATCAGTAAGC
CGGCGCAGCCGCCGGCGATGTCGCCGATGCCCCTCCTGACGGGCTCGGACGTGGCGGAGC
CGCCGCTGCCGCCTGCAAGAACAGCTCAGGCGCCGTCGCTCGCGAGCAGGATGCAGGCTC
ATGCCGCGATCGTCGTCACATTGGCGATGCTTCTCGCTTGCCATCCCCTGGTATGACCGG
ACAACGCAGCAGGTTCACAAGCCAAAATACTAATCCAGTCTGTTTGTTCTGTTCTTTCTT
TTTTTTTTCTTTTTTTTTCTCATGTAGCGATTCGTTTCATCCTCATGTATTTTTTTTTGC
ATTGATGATCGTCCCCGATTTGCCTATTACTGTCCTCAGTGGTCTCAGTATATATGTGTG
GTATGAATCTAAATACATACATATGTCTAGATTCATTAATATCTAAATGAATGTGGGCAA
TGCTAGAAAGTCTTATATTGT