Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0463800-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:23153453:23158544:-1 gene:Os04g0463800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0463800-01)
Sequence	ATGCCGCCAACTCCTCCGCTCGCCGCCCTCCACCGCTTCCTCGCCTCGCCGTCCCCGCCG CCGCTCCCCTCGCTGCTCACCCTCCACGCGCTCGCCGTCACATCCGGCCTCTCCCCGCGC CCCGACTTCGCCGCCAAGCTCGTCTCCGCCTACTCCTCCGCCGGCCTCCCCGCCCTCGCC GCGCTCGCCTTCGCCGCCTCCCCCTGCCCGGACGCCTTCCTCTGGAACTCCCTGCTCCGC TCCCGCCACCGCGCCTCCGACTTCGCCTCCACGCTCTCCGCGCACCGCCGCATGCGCGCC TCGGGGGCGCGGCCCTCCCGCTTCACCGCGCCCCTCGTCGCCTCCGCCGCCGCGGAGCTC GGCGCCCTCCCTGTAGGCGCCGCCGTCCACGCCTACTCCGTCAGGTTCGGCCTCCTGGAG GGCGATGGTTCAGTCGCGGTCGCGTCGTCGCTGGTCTACATGTACGCCAGGTGCGGCAGC GTCCGCGACGCCGTGAGGCTGTTCGACGAAATGCCCGAGAGGGACGTGGTCGCGTGGACT GCCGTGATCTCCGGGTGCGTGTGTAACGGGCAGTGCGGGGAAGGGCTGAGCTACTTGGTG CGAATGGTTCGGTCTGCAGGTGATGGCGGTGCGAGGCCGAACTCACGGACGATGGAGAGT GGGTTGGAGGCCTGCGGGGTGCTAGGGGAGCTCTCTGTTGGGACATGCTTGCATGGGTTT GGGGTGAAGGCCGGGGTTGGACACTGCCCGTCGGTGGTTTCATCGCTTTTTTCTATGTAC ACTAAGTGCGATAGCACTGAGGATGCACGGATTTTGTTCCCGGAGTTGCCGGAGAAAGAT TTGGTTTCCTGGACCAGCTTGATTGGAGCATACTGTAGGGCAGGCCATGCTGAGAAGGCT GTGGAGTTGTTCCTGGGCATGGAGGAGTCTGGTCTGCAACCAGACGAGGTTGTTATTAGT TGTTTACTTGCAGGGTTGGGTAATGATGCTAAGGTGCGTGGAGGGAAGACGTTTCATGCA GCTATAGTGAGGAGAAACTTTGGAGATAGTGTTCTGATTGGGAATGCTTTGATCTCGATG TATGCAAAGTGCAAACAGGTTGATATTGCAGCCACGGTTTTCAGAATGTTGCATCAACGA GACACAGACTCATGGAGTTCAATGGTTGTAGCATATTGCAAAGCTGGACTTGATTTGAAA TGCTTGGAGTTGTATCGAGAAATGCAGTTCAGAGACAAGGATGAGTTTGAATATGACACC AACAGTTTGATTTCCATTATTTCTTCTTGTTCAAGGCTTGGTAGACTACGATTAGGTCAA TCAGCACATTGCTATTCAATCAAACACTTAGCCGGTGAAAATTCATCAGTTGCAAATGCA CTAATTAGCATGTATGGAAGGTGTGGTAATTTTGACGTTGCACGGAAAATATTTGGTATG GTCAAAACAAAGGATGTTGTCACATGGAGTGCATTAATTTCCAGCTATTCTCACCTGGGG CATTCAAAGGATGCTTTGTTACTGTATGATCAGATGCTCACTGAAGGTGTTAAACCCAAC TCAGCAACCTTGGTCTCTGTCATTTCATCTTGTGCAAATTTGGCTGCATTGGAACATGGA GAGCTCATACATTCTCATGTGAAAGATGTGGGGCTGGAGTGTGATTTGTCAATTTGCACA GCACTTGTTGACATGTATATGAAATGCGGACAACTTGGCATCGCAAGAAAAATGTTTGAT TCCATGCTCGAAAGGGATGTTGTTACTTGGAATGTGATGATATCAGGCTATGGGATGCAT GGTGAAGCAATACAAGCATTAAAACTTTTTAGTATGATGGAAAGAGGAAATGTTAAGCCT AATAGCCTCACTTTTCTTGCCATTCTGTCTGCTTGCTGCCATGCAGGACTTGTTGACAAG GGCAGGGAGTTGTTCACTAGAATGGAGGAATACTCCCTTGAGCCTAACCTGAAGCACTAT GCCTGTATGGTGGATCTTCTAGGGAAATCTGGGCATCTTCAAGAAGCAGAAGATGTGGTT TCTGCAATGCCAATAGAACCTGATGGTGGAATATGGGGAACTTTACTTGGTGCCTGCAAA ATGCATGACAATTTTGAAATGGGTTTACGGGTTGCAAAGAAGGCGTTTGCTTCTGACCCA GAAAATGATGGGTACTACATTTTAATGTCAAATTCGTATGGTAGTGCTGAGAAATGGAAT GAAATAGAGAAACTAAGAGACATGATGAAGAATCATGGAGTGGAAAAGAGTATAGGTTGG AGCACAATTGATATTTGTGGGTAA

Peptide Sequence

PEP ID	Os04t0463800-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:23153453:23158544:-1 gene:Os04g0463800 transcript:Os04t0463800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0463800-01)
Sequence	MPPTPPLAALHRFLASPSPPPLPSLLTLHALAVTSGLSPRPDFAAKLVSAYSSAGLPALA ALAFAASPCPDAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAEL GALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWT AVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGF GVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKA VELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISM YAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDT NSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGM VKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHG ELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMH GEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHY ACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDP ENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDICG

Transcript Sequence

Transcript ID	Os04t0463800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:23153453:23158544:-1 gene:Os04g0463800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0463800-01)
Sequence	AGTTATACACGGTTACACCTGAGTTTCGAACCGGCGAACAAATGCCGCCAACTCCTCCGC TCGCCGCCCTCCACCGCTTCCTCGCCTCGCCGTCCCCGCCGCCGCTCCCCTCGCTGCTCA CCCTCCACGCGCTCGCCGTCACATCCGGCCTCTCCCCGCGCCCCGACTTCGCCGCCAAGC TCGTCTCCGCCTACTCCTCCGCCGGCCTCCCCGCCCTCGCCGCGCTCGCCTTCGCCGCCT CCCCCTGCCCGGACGCCTTCCTCTGGAACTCCCTGCTCCGCTCCCGCCACCGCGCCTCCG ACTTCGCCTCCACGCTCTCCGCGCACCGCCGCATGCGCGCCTCGGGGGCGCGGCCCTCCC GCTTCACCGCGCCCCTCGTCGCCTCCGCCGCCGCGGAGCTCGGCGCCCTCCCTGTAGGCG CCGCCGTCCACGCCTACTCCGTCAGGTTCGGCCTCCTGGAGGGCGATGGTTCAGTCGCGG TCGCGTCGTCGCTGGTCTACATGTACGCCAGGTGCGGCAGCGTCCGCGACGCCGTGAGGC TGTTCGACGAAATGCCCGAGAGGGACGTGGTCGCGTGGACTGCCGTGATCTCCGGGTGCG TGTGTAACGGGCAGTGCGGGGAAGGGCTGAGCTACTTGGTGCGAATGGTTCGGTCTGCAG GTGATGGCGGTGCGAGGCCGAACTCACGGACGATGGAGAGTGGGTTGGAGGCCTGCGGGG TGCTAGGGGAGCTCTCTGTTGGGACATGCTTGCATGGGTTTGGGGTGAAGGCCGGGGTTG GACACTGCCCGTCGGTGGTTTCATCGCTTTTTTCTATGTACACTAAGTGCGATAGCACTG AGGATGCACGGATTTTGTTCCCGGAGTTGCCGGAGAAAGATTTGGTTTCCTGGACCAGCT TGATTGGAGCATACTGTAGGGCAGGCCATGCTGAGAAGGCTGTGGAGTTGTTCCTGGGCA TGGAGGAGTCTGGTCTGCAACCAGACGAGGTTGTTATTAGTTGTTTACTTGCAGGGTTGG GTAATGATGCTAAGGTGCGTGGAGGGAAGACGTTTCATGCAGCTATAGTGAGGAGAAACT TTGGAGATAGTGTTCTGATTGGGAATGCTTTGATCTCGATGTATGCAAAGTGCAAACAGG TTGATATTGCAGCCACGGTTTTCAGAATGTTGCATCAACGAGACACAGACTCATGGAGTT CAATGGTTGTAGCATATTGCAAAGCTGGACTTGATTTGAAATGCTTGGAGTTGTATCGAG AAATGCAGTTCAGAGACAAGGATGAGTTTGAATATGACACCAACAGTTTGATTTCCATTA TTTCTTCTTGTTCAAGGCTTGGTAGACTACGATTAGGTCAATCAGCACATTGCTATTCAA TCAAACACTTAGCCGGTGAAAATTCATCAGTTGCAAATGCACTAATTAGCATGTATGGAA GGTGTGGTAATTTTGACGTTGCACGGAAAATATTTGGTATGGTCAAAACAAAGGATGTTG TCACATGGAGTGCATTAATTTCCAGCTATTCTCACCTGGGGCATTCAAAGGATGCTTTGT TACTGTATGATCAGATGCTCACTGAAGGTGTTAAACCCAACTCAGCAACCTTGGTCTCTG TCATTTCATCTTGTGCAAATTTGGCTGCATTGGAACATGGAGAGCTCATACATTCTCATG TGAAAGATGTGGGGCTGGAGTGTGATTTGTCAATTTGCACAGCACTTGTTGACATGTATA TGAAATGCGGACAACTTGGCATCGCAAGAAAAATGTTTGATTCCATGCTCGAAAGGGATG TTGTTACTTGGAATGTGATGATATCAGGCTATGGGATGCATGGTGAAGCAATACAAGCAT TAAAACTTTTTAGTATGATGGAAAGAGGAAATGTTAAGCCTAATAGCCTCACTTTTCTTG CCATTCTGTCTGCTTGCTGCCATGCAGGACTTGTTGACAAGGGCAGGGAGTTGTTCACTA GAATGGAGGAATACTCCCTTGAGCCTAACCTGAAGCACTATGCCTGTATGGTGGATCTTC TAGGGAAATCTGGGCATCTTCAAGAAGCAGAAGATGTGGTTTCTGCAATGCCAATAGAAC CTGATGGTGGAATATGGGGAACTTTACTTGGTGCCTGCAAAATGCATGACAATTTTGAAA TGGGTTTACGGGTTGCAAAGAAGGCGTTTGCTTCTGACCCAGAAAATGATGGGTACTACA TTTTAATGTCAAATTCGTATGGTAGTGCTGAGAAATGGAATGAAATAGAGAAACTAAGAG ACATGATGAAGAATCATGGAGTGGAAAAGAGTATAGGTTGGAGCACAATTGATATTTGTG GGTAAGTTTAATTGGAGCTATGCCTTTTCCTAGGTCCTTGTGAGCAGTTGTGATCTAGTT CATCTTCTCTATGTCAGAAATGTTTGTCTTACAGGTTTATGAAAAATCAACTGACCCAAT GGCAGCATTCTCTCTTTGAACAATCTGAATTTAGAAGTTCAGAGGATATGTGCATTTCTT TTGTCTCTGGAATCTGGAGTGAGTCAATGGTCAATGGATTGACAGAATGGGGGAATGAGG TAGTAGATTCATCAGAATTTAGGAACAAAGCCCAAAGGGTAAATATGAAATTGGAGTTGG ATGTAATGTATGCTTCCTGATGTGTCATGGTTTCCACCATAAAAGAGGGTTACTCTATTG CGTGTAGACTGGAGAATATTCTCAGTAATATAATGTGCAACCATATCATAAAAAGAGAAA ATTGTCATGATTCAGCTTAAGGTGGCTGCCATGCTTATGTTCTTACGTCATAGCACTGAG CCAGGTGAACTGGGACATGGCAGTTGCAGCATTATGGCAGTGAATTTCTGTTTTGTGCTG ATGGTTACATCATCTTGGTAATTATAACTGTGCAGAATACTGCTTGACTATGGGCATAGG AACATTATGTGCAGTATTCTAAAAGGACTATTGTGTTGGCTTTTACAGCAACAAAATACT GAAATTGTGTCCTATGGCTCGTGATTAGAAATGGACGTGCTGTGGTGGAGTAAAGACCTG TACAGGGAAATCTTCATTTGAAGAGTTCTTGTGATAAAATATTAAGGGAGCTGGATAGCT GGTGTTTTAGCAGCCTATGCTGCTAGGAACACACAGGTGCAAAGTGCTCTTGAGAATCAA AACATATTATTATTACGATCTCGTCTGCTCACGTTGAGTTTATTTTCCACCAACAGGTTC ATGATCTTTTTGTAGCGAGGACTTTCACAGGTTCAACAAATCCAATTGCCCACTCCCACA TTACTTGCGATGACTTCCTTTTCTTCTGCAACCAATACAACTTTTCCTTTTAATCTTTAT TATGCTCAGGTTAAATGTTTTAACTCATGCACATATACATAACCTTTTTCTCATCTGCTC ATACAAATTTTCCATTGGCTGGTATGTATGTAGCAGCAATCATTCATTCTTGGATTCCTG AGGAGCAACCTAACAGAAGACCCAACTTTTATCTAGCTGAACTTCCCATGTGGAAGGACA TATCTCGTACCAGAGCTATGAGGTAGAGTGGGTTATCATACCAAAATCTCCACATGCTTT TGGTGCCACATACCCACAACGATCCGAGCTAGTGGCGCTGGTAGCACTTCACTGGAGCAA ATGATAGTAGCCGCATATGCAGGTGTGCACCCTCTCTTCTTTTGGATGTGCGCACCAACT GTTTTTGCAATGCATTCGCCTGGAATGGGTGTGGGAAATAAAATTTATGGACCTCATATA ATTTGGGATTCTTTGGTGTCTTCATGTCATGTACTCACGTCCCTTTGCAGTGTACATGAC GTCTAAAGGATTAGGGGCACCCGTGTATACGAGTGTAACTCTAAACGCAGTCTCTCTCTC TCTCTCCCTCTCTCTCTCTCTCTCTCTCGTGTGTGTGTGTAACAAATCATGTTCATTTTT TTGGGGGGTGGGGGGTAACTTTCTAGTAATGCGAATATAAACTTGTTTGTTG