Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0459900-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:22954845:22960460:1 gene:Os04g0459900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Deg protease 5, DEG PROTEASE 5 description:Peptidase, trypsin-like serine and cysteine domain containing protein. (Os04t0459900-01)
Sequence	ATGCACTGCCTCGCCTGCGCCGCTCCGGCCGCGCGCGCCCCGGGCAGTCGCGTCGGCGGC GGCGGCCGCCGGAGGATGGCTATCGAGTGCGCCGCCTCCTCCCCCTTCACCCGCGACGGC GAGGAAACGGCCCCGAGGTCAATGATGGAAACATATGGTGAAATGTCAAGTAAACCTGTA TTGCTTGCGTCAAGGAGGAAGCTTGTTGCATTATCATCGTTTTGCTTTTGCTTACATTCT TCAAGGTACTTCTCAGCACTTGCTTTGGGTGATCCATCTGTTAAAATTGATGATGTCACT CCAAAGATTTTTCCATCTGGTCCACTGTTTCCAACTGAGAAACGGATCGCAGAGCTTTTT GAAACAAATACTTACTCTGTTGTCAACATTTTTGATGCAACTCTGCGCCCTCAGCTCAAT GTAACTGGTGTTGTTGAGATTCCCGAAGGAAATGGTTCTGGCGTAGTTTGGGATGATTCC GGCCATATTGTTACAAACTACCATGTGGTTGGCAATGCCCTTTCAAAAAAACCAAAGCCT GGCGAAGTTGTTGCGCGTGTCAACATTCTTGCTGCTGATGGGATACAGAAAAATTTTGAA GGCAAATTGGTTGGTGCTGACCGTTCTAAAGATCTTGCTGTTCTCAAGGTGGATGCTCCT ACAGATCTGTTGAAGCCAATTAACGTGGGACAATCTTCAGCTCTAAGAGTTGGTCAACAG TGTTTAGCAATTGGAAATCCATTTGGCTTTGACCATGCTCTAACTGTTGGTGTCATCAGT GGTTTAAATCGAGACATTTTCAGTCAAGCTGGAGTAACAATTGGAGGTGGAATTCAAACA GATGCAGCTATTAACCCTGGGAACAGTGGTGGTCCATTGCTGGATTCGAAGGGGCATATG ATTGGTATTAATACAGCAATTTTCACACAGACAGGAACATCTGCTGGTGTTGGTTTTGCC ATCCCGTCATCAACTGTTCTGAAAATAGCTCCTCAGTTAATTCAGTTTGGAAAAGTTCGC CGTGCTGGCTTGAATGTGGAGTTTGCTCCAGATCCAATCGCATATCAGCTTAATGTTCGC ACTGGATCTCTAATATTGCAGGTTCCTGGGGGCAGTGCTGCAGCCAAAGCTGGTCTTGTT CCTACCAGTAGGGGTTTTGCTGGTAACATTGTTCTTGGTGATGTCATTGTTGCCGTGGAC GGTAAACCTATCAAAGGCAAATCTGATCTATCGAGGGTTCTGGATGATTATGGCGTTGGA GACAAGGTGAGCTTGACAATCCAAAGAGGCGCTGAAACTCTGGAGGTAACCTTGCCTTTA GAAGAGGCAAGTATCTGA

Peptide Sequence

PEP ID	Os04t0459900-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:22954845:22960460:1 gene:Os04g0459900 transcript:Os04t0459900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Deg protease 5, DEG PROTEASE 5 description:Peptidase, trypsin-like serine and cysteine domain containing protein. (Os04t0459900-01)
Sequence	MHCLACAAPAARAPGSRVGGGGRRRMAIECAASSPFTRDGEETAPRSMMETYGEMSSKPV LLASRRKLVALSSFCFCLHSSRYFSALALGDPSVKIDDVTPKIFPSGPLFPTEKRIAELF ETNTYSVVNIFDATLRPQLNVTGVVEIPEGNGSGVVWDDSGHIVTNYHVVGNALSKKPKP GEVVARVNILAADGIQKNFEGKLVGADRSKDLAVLKVDAPTDLLKPINVGQSSALRVGQQ CLAIGNPFGFDHALTVGVISGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGHM IGINTAIFTQTGTSAGVGFAIPSSTVLKIAPQLIQFGKVRRAGLNVEFAPDPIAYQLNVR TGSLILQVPGGSAAAKAGLVPTSRGFAGNIVLGDVIVAVDGKPIKGKSDLSRVLDDYGVG DKVSLTIQRGAETLEVTLPLEEASI

Transcript Sequence

Transcript ID	Os04t0459900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:22954845:22960460:1 gene:Os04g0459900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Deg protease 5, DEG PROTEASE 5 description:Peptidase, trypsin-like serine and cysteine domain containing protein. (Os04t0459900-01)
Sequence	GTGAGGTTTCAAATCATCTCGCTTCACGGTGGTCGCTCGCAAGCCACACACGCACGCACC CCCACCACTCCTCCCATTCGAGACCCCGCGGGGCTCTGGATTGCTTGCTCGGAACCTGGG ATGCACTGCCTCGCCTGCGCCGCTCCGGCCGCGCGCGCCCCGGGCAGTCGCGTCGGCGGC GGCGGCCGCCGGAGGATGGCTATCGAGTGCGCCGCCTCCTCCCCCTTCACCCGCGACGGC GAGGAAACGGCCCCGAGGTCAATGATGGAAACATATGGTGAAATGTCAAGTAAACCTGTA TTGCTTGCGTCAAGGAGGAAGCTTGTTGCATTATCATCGTTTTGCTTTTGCTTACATTCT TCAAGGTACTTCTCAGCACTTGCTTTGGGTGATCCATCTGTTAAAATTGATGATGTCACT CCAAAGATTTTTCCATCTGGTCCACTGTTTCCAACTGAGAAACGGATCGCAGAGCTTTTT GAAACAAATACTTACTCTGTTGTCAACATTTTTGATGCAACTCTGCGCCCTCAGCTCAAT GTAACTGGTGTTGTTGAGATTCCCGAAGGAAATGGTTCTGGCGTAGTTTGGGATGATTCC GGCCATATTGTTACAAACTACCATGTGGTTGGCAATGCCCTTTCAAAAAAACCAAAGCCT GGCGAAGTTGTTGCGCGTGTCAACATTCTTGCTGCTGATGGGATACAGAAAAATTTTGAA GGCAAATTGGTTGGTGCTGACCGTTCTAAAGATCTTGCTGTTCTCAAGGTGGATGCTCCT ACAGATCTGTTGAAGCCAATTAACGTGGGACAATCTTCAGCTCTAAGAGTTGGTCAACAG TGTTTAGCAATTGGAAATCCATTTGGCTTTGACCATGCTCTAACTGTTGGTGTCATCAGT GGTTTAAATCGAGACATTTTCAGTCAAGCTGGAGTAACAATTGGAGGTGGAATTCAAACA GATGCAGCTATTAACCCTGGGAACAGTGGTGGTCCATTGCTGGATTCGAAGGGGCATATG ATTGGTATTAATACAGCAATTTTCACACAGACAGGAACATCTGCTGGTGTTGGTTTTGCC ATCCCGTCATCAACTGTTCTGAAAATAGCTCCTCAGTTAATTCAGTTTGGAAAAGTTCGC CGTGCTGGCTTGAATGTGGAGTTTGCTCCAGATCCAATCGCATATCAGCTTAATGTTCGC ACTGGATCTCTAATATTGCAGGTTCCTGGGGGCAGTGCTGCAGCCAAAGCTGGTCTTGTT CCTACCAGTAGGGGTTTTGCTGGTAACATTGTTCTTGGTGATGTCATTGTTGCCGTGGAC GGTAAACCTATCAAAGGCAAATCTGATCTATCGAGGGTTCTGGATGATTATGGCGTTGGA GACAAGGTGAGCTTGACAATCCAAAGAGGCGCTGAAACTCTGGAGGTAACCTTGCCTTTA GAAGAGGCAAGTATCTGATGTATTTCTAGCAGTAAGTTGGCATCCCCGATCTATTGCTTT TGTAAATATCGCATTTGCTGAGCTGTTCATGCTTCCAACCTGAAGCCTTTTTCGTTTGTT TCTTAAATACTAAAACGAATCGATTCAGAACTCTCTCTCTCTCTCTCTCTCCTCTCCATA GATGGTGCCTCAATATACATCAGAGTTTCTGCTTATTATACGTCATAATCCTTTGAAGAT TATGATGCAGTCAGTCC