Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0457500-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:22855680:22860859:-1 gene:Os04g0457500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0523F07.13 protein. (Os04t0457500-01)
Sequence

ATGAACGCTCGACGCCTTCACAAATGGGCGGCCACCGCGCGGCTGGTGCTCCTCCTCTTA
GCCGCTGCTGCGGCGGCGGCGGCGGCGGCGGCGGGGCGCAGGGAGGTGGTGACCTCGCCG
CACGGCGCCGTGGCGGCGGACGACGGGCGGTGCTCGAGGATCGGGCGCGACGCGCTCCGC
GACGGCGGTAACGCCGTGGACGCCGCCGTCGCCGCGTCGCTCTGCCTCGGCGTCGTCAGC
CCGGCGTCCAGCGGGGTCGGCGGCGGCGCCTTCATGCTCGTCCGGCTCGCCGACGGCACC
GCCCTCGCGTACGACTCCCGCGAGACCGCCCCCCTCGCCGCCTCCCAGGATATGTATGGT
GGCAACGAAACGCTGAAAGCAAGGGGAGCTCTATCCATAGCAGTTCCAGGGGAAATTGCA
GGTCTGTATGAGGCATGGAAGCGCCATGGCAAGCTTCCTTGGAAGAGGTTAGTGATGCCA
GCAGCAAAGCTTGCCCGTGCATTCAGAGTGTCACCTTATCTGAGGAAGCAGATGGAGGCA
ACCAGAGATGGAATTCTCCAAAATAAGGGAATAAGTGGAGTGTACACCTCAAATGGAGAT
ATCCTTAATGTTGGAGATGTATGCCGCAACATTAGGCTTGCAAGAACACTGGTGGCTGTC
GCGGAGAAAGGGCCGGATGTGTTCTACAAAGGCGCAGTTGGTGATCAGCTGGCGAAGGAT
ATTCAGGAAGTTGGAGGGATCATAACAATGGAAGATCTGAAGAAATACCAAGTTAAGATA
CGTCGGCCACTTTTAGAGAATGTATTGGGACTGACAGTATTAAGCATGCCTCCTCCTTCA
GCTGGTGGTGCTGGGCTAATGCTTGTTCTGAATATCCTTACTCAGTATGGCCTCCCTGCT
GGTTTTTCTGGCTCACTTGGGATCCATCGTCTAATTGAGTCCTTGAAGCATTACTTTGCA
ATAAGGATGAACCTTGGCGACCCTGAGTTTGTAAATGTTAACGAAGTCGTCTCTGATATG
ATGTCCCCTAAATTTGCTGCTGACCTGAAGAAAACCATCTATGATAACATGACATTTGAC
CCTAAACACTATGGTGGCAGGTGGAACATCCTTCAGGACCATGGAACAAGCCACCTGTCC
ATCGTCGACAGCGAGAGGAACGCCGTTTCGATGACCACCACTGTCAACGCGTACTTTGGA
TCCCTGATCCTGTCTCCGAGCACAGGCATTTTGCTCAACAACGAGATGGACGACTTCTCC
ATGCCGGCGAACACGTCGGCCAACTCTCCGCCGCCTGCCCCCGCCAATTTCGTTAGGCCT
CTGAAACGGCCTCTCTCCTCGATGACTCCGACGATAATACTCAAGGATGGCAATCTGAAG
GCTGCGGTTGGAGCTAGTGGTGGGAGCATGATCCCTGCTGGAACCATGGAAGTGCTCCTC
AACCATTTCGTCAAGAACATGGACCCGTTGTCCTCTGTCATGGCGCCAAGAGTGTATCAC
CAGCTGATCCCGAACGTGGTCCAGTACGAGAACTGGACGACGGTGACCGGCGACCACTTC
GAGCTGGACGCCGCGACGAGAGCCGACCTGCGGAGGAAAGGCCACGTCTTGGAGCCGCTC
GCCGGAGGGACCATCAGCCAGCTCGTCGTGGACGACGTCGAGCGCCACGGCGGTCTGACC
GCCGTCAGCGACCCCAGGAAAGGCGGCTTCCCGGCCGGCTATTAG

Peptide Sequence

PEP ID

Os04t0457500-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:22855680:22860859:-1 gene:Os04g0457500 transcript:Os04t0457500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0523F07.13 protein. (Os04t0457500-01)
Sequence

MNARRLHKWAATARLVLLLLAAAAAAAAAAAGRREVVTSPHGAVAADDGRCSRIGRDALR
DGGNAVDAAVAASLCLGVVSPASSGVGGGAFMLVRLADGTALAYDSRETAPLAASQDMYG
GNETLKARGALSIAVPGEIAGLYEAWKRHGKLPWKRLVMPAAKLARAFRVSPYLRKQMEA
TRDGILQNKGISGVYTSNGDILNVGDVCRNIRLARTLVAVAEKGPDVFYKGAVGDQLAKD
IQEVGGIITMEDLKKYQVKIRRPLLENVLGLTVLSMPPPSAGGAGLMLVLNILTQYGLPA
GFSGSLGIHRLIESLKHYFAIRMNLGDPEFVNVNEVVSDMMSPKFAADLKKTIYDNMTFD
PKHYGGRWNILQDHGTSHLSIVDSERNAVSMTTTVNAYFGSLILSPSTGILLNNEMDDFS
MPANTSANSPPPAPANFVRPLKRPLSSMTPTIILKDGNLKAAVGASGGSMIPAGTMEVLL
NHFVKNMDPLSSVMAPRVYHQLIPNVVQYENWTTVTGDHFELDAATRADLRRKGHVLEPL
AGGTISQLVVDDVERHGGLTAVSDPRKGGFPAGY

Transcript Sequence

Transcript ID

Os04t0457500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:22855680:22860859:-1 gene:Os04g0457500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0523F07.13 protein. (Os04t0457500-01)
Sequence

GGCTCGGCAGTCGGCACCCGCCATCTCCCGCGCGGCAGCGCCCCGCCCGCCCATGAACGC
TCGACGCCTTCACAAATGGGCGGCCACCGCGCGGCTGGTGCTCCTCCTCTTAGCCGCTGC
TGCGGCGGCGGCGGCGGCGGCGGCGGGGCGCAGGGAGGTGGTGACCTCGCCGCACGGCGC
CGTGGCGGCGGACGACGGGCGGTGCTCGAGGATCGGGCGCGACGCGCTCCGCGACGGCGG
TAACGCCGTGGACGCCGCCGTCGCCGCGTCGCTCTGCCTCGGCGTCGTCAGCCCGGCGTC
CAGCGGGGTCGGCGGCGGCGCCTTCATGCTCGTCCGGCTCGCCGACGGCACCGCCCTCGC
GTACGACTCCCGCGAGACCGCCCCCCTCGCCGCCTCCCAGGATATGTATGGTGGCAACGA
AACGCTGAAAGCAAGGGGAGCTCTATCCATAGCAGTTCCAGGGGAAATTGCAGGTCTGTA
TGAGGCATGGAAGCGCCATGGCAAGCTTCCTTGGAAGAGGTTAGTGATGCCAGCAGCAAA
GCTTGCCCGTGCATTCAGAGTGTCACCTTATCTGAGGAAGCAGATGGAGGCAACCAGAGA
TGGAATTCTCCAAAATAAGGGAATAAGTGGAGTGTACACCTCAAATGGAGATATCCTTAA
TGTTGGAGATGTATGCCGCAACATTAGGCTTGCAAGAACACTGGTGGCTGTCGCGGAGAA
AGGGCCGGATGTGTTCTACAAAGGCGCAGTTGGTGATCAGCTGGCGAAGGATATTCAGGA
AGTTGGAGGGATCATAACAATGGAAGATCTGAAGAAATACCAAGTTAAGATACGTCGGCC
ACTTTTAGAGAATGTATTGGGACTGACAGTATTAAGCATGCCTCCTCCTTCAGCTGGTGG
TGCTGGGCTAATGCTTGTTCTGAATATCCTTACTCAGTATGGCCTCCCTGCTGGTTTTTC
TGGCTCACTTGGGATCCATCGTCTAATTGAGTCCTTGAAGCATTACTTTGCAATAAGGAT
GAACCTTGGCGACCCTGAGTTTGTAAATGTTAACGAAGTCGTCTCTGATATGATGTCCCC
TAAATTTGCTGCTGACCTGAAGAAAACCATCTATGATAACATGACATTTGACCCTAAACA
CTATGGTGGCAGGTGGAACATCCTTCAGGACCATGGAACAAGCCACCTGTCCATCGTCGA
CAGCGAGAGGAACGCCGTTTCGATGACCACCACTGTCAACGCGTACTTTGGATCCCTGAT
CCTGTCTCCGAGCACAGGCATTTTGCTCAACAACGAGATGGACGACTTCTCCATGCCGGC
GAACACGTCGGCCAACTCTCCGCCGCCTGCCCCCGCCAATTTCGTTAGGCCTCTGAAACG
GCCTCTCTCCTCGATGACTCCGACGATAATACTCAAGGATGGCAATCTGAAGGCTGCGGT
TGGAGCTAGTGGTGGGAGCATGATCCCTGCTGGAACCATGGAAGTGCTCCTCAACCATTT
CGTCAAGAACATGGACCCGTTGTCCTCTGTCATGGCGCCAAGAGTGTATCACCAGCTGAT
CCCGAACGTGGTCCAGTACGAGAACTGGACGACGGTGACCGGCGACCACTTCGAGCTGGA
CGCCGCGACGAGAGCCGACCTGCGGAGGAAAGGCCACGTCTTGGAGCCGCTCGCCGGAGG
GACCATCAGCCAGCTCGTCGTGGACGACGTCGAGCGCCACGGCGGTCTGACCGCCGTCAG
CGACCCCAGGAAAGGCGGCTTCCCGGCCGGCTATTAGACCGGAGTGGCTGAGCTATAGCT
GCCTAGCTTTGATGCAGCGATGATTGCTTGCTGCGCCATTCATGGACATATTTGTACACG
TCGTTCTGTTCTATGATTCTATCGAATAAATAATACTCCCTCAGCTTATAAAATGTTTTA
ACTTTGATC