Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0457000-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:22835913:22837163:-1 gene:Os04g0457000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:light-harvesting protein CP24, PSII CP24 description:Similar to Chlorophyll a/b-binding protein CP24, photosystem II (Fragment). (Os04t0457000-01)
Sequence	ATGGCGCTCGCCTCCACCTCCGCCACCGCGTCCGCGGCCGTGCTCAAGACGCCCTTCCTC GGGGCGAAGCGCGCGCTCGCCAATGCCGTCGGCGTCGCGGGCGCCAAGCCCGCGCCGCGC CGCGCGCTCGTCGTGTCGGCCAAGAAGTCGTGGATCCCGGCCTTCAAGAGCGACGCCGAG TTCATCAACCCGCCGTGGCTCGATGGCTCGCTCCCCGGTGACTTCGGCTTCGACCCGCTG GGGCTGGGCAAGGACCCGGCGTTCCTCAAGTGGTACAGGGAGGCGGAGCTGATCCACGGG CGGTGGGCGATGGCGGCGGTGCTGGGGATCTTCGTCGGGCAGGCGTGGAGCGGCGTGCCG TGGTTCGAGGCCGGCGCGCAGCCGGAGGCCATCGCGCCCTTCTCCTTCGGCTCCCTCCTC GGGACGCAGCTGCTGCTCATGGGCTGGGTAGAGTCCAAGCGGTGGGTCGACTTCTTCAAC CCGGACTCGCAGGCGGTGGAGTGGGCCACGCCGTGGTCGCGCACCGCCGAGAACTTCTCC AACGCCACCGGCGAGCAGGGCTACCCCGGCGGCAAGTTCTTCGACCCGCTCGGCCTCGGC GGCGAGACCAGGGACGGCGTCTACATCCCGGACACCGACAAGCTCGACCGGCTCAAGCTC GCCGAGATCAAGCACGCCCGCCTCGCCATGCTCGCCATGCTCATCTTCTACTTCGAGGCC GGCCAGGGCAAGACGCCGCTCGGCGCCCTCGGCCTATGA

Peptide Sequence

PEP ID	Os04t0457000-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:22835913:22837163:-1 gene:Os04g0457000 transcript:Os04t0457000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:light-harvesting protein CP24, PSII CP24 description:Similar to Chlorophyll a/b-binding protein CP24, photosystem II (Fragment). (Os04t0457000-01)
Sequence	MALASTSATASAAVLKTPFLGAKRALANAVGVAGAKPAPRRALVVSAKKSWIPAFKSDAE FINPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVP WFEAGAQPEAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQAVEWATPWSRTAENFS NATGEQGYPGGKFFDPLGLGGETRDGVYIPDTDKLDRLKLAEIKHARLAMLAMLIFYFEA GQGKTPLGALGL

Transcript Sequence

Transcript ID	Os04t0457000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:22835913:22837163:-1 gene:Os04g0457000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:light-harvesting protein CP24, PSII CP24 description:Similar to Chlorophyll a/b-binding protein CP24, photosystem II (Fragment). (Os04t0457000-01)
Sequence	GCTCGCTCCCGATCACACCGTCCGCCACCGGAAGAGAGAGCCCCCCTACGACGACGACGA CCATGGCGCTCGCCTCCACCTCCGCCACCGCGTCCGCGGCCGTGCTCAAGACGCCCTTCC TCGGGGCGAAGCGCGCGCTCGCCAATGCCGTCGGCGTCGCGGGCGCCAAGCCCGCGCCGC GCCGCGCGCTCGTCGTGTCGGCCAAGAAGTCGTGGATCCCGGCCTTCAAGAGCGACGCCG AGTTCATCAACCCGCCGTGGCTCGATGGCTCGCTCCCCGGTGACTTCGGCTTCGACCCGC TGGGGCTGGGCAAGGACCCGGCGTTCCTCAAGTGGTACAGGGAGGCGGAGCTGATCCACG GGCGGTGGGCGATGGCGGCGGTGCTGGGGATCTTCGTCGGGCAGGCGTGGAGCGGCGTGC CGTGGTTCGAGGCCGGCGCGCAGCCGGAGGCCATCGCGCCCTTCTCCTTCGGCTCCCTCC TCGGGACGCAGCTGCTGCTCATGGGCTGGGTAGAGTCCAAGCGGTGGGTCGACTTCTTCA ACCCGGACTCGCAGGCGGTGGAGTGGGCCACGCCGTGGTCGCGCACCGCCGAGAACTTCT CCAACGCCACCGGCGAGCAGGGCTACCCCGGCGGCAAGTTCTTCGACCCGCTCGGCCTCG GCGGCGAGACCAGGGACGGCGTCTACATCCCGGACACCGACAAGCTCGACCGGCTCAAGC TCGCCGAGATCAAGCACGCCCGCCTCGCCATGCTCGCCATGCTCATCTTCTACTTCGAGG CCGGCCAGGGCAAGACGCCGCTCGGCGCCCTCGGCCTATGAGCAATCAACCCCGCTCTCG CTCGCCATGGATCTGACACACAGAGTTGGGTTTCGCTTGCATGCGCGCTTCGTGTTTGAT CGCTAGCTGTTGCATCGATCGGGCGCGTGCATGGGCTCGGATCGAACGATTGGAGGTCGG AGGAGCAGTAGCAAAATGTATCTTGTTGTGTTCGTGGCCGCTTTTGGGTTGGGTGGTGTG CGTGAACCAAATGGGGGAATTAATCAAGGAGTTATTTTTTTTTATTTTTCTTCCCAGTGT ATGTACCATATGTAATATATATAATTAAGGCTGCAGGATGAGCAAGGATATTTCATTGAT C